mRNA_H-paniculata_contig2285.6100.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2285.6100.1
Unique NamemRNA_H-paniculata_contig2285.6100.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2285.6100.1 vs. uniprot
Match: D8LKY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKY9_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 5.980e-26
Identity = 61/75 (81.33%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  100 TPEAKRARALDSMVSAAERSNALQKGAVEAGAEHLRRQEVADAERLNMEKEEHALRMAIGKSALALLNKMVGEAP 324
            +PEAKRAR LDSMVSAAERSN LQ    EAGAEH+RR E+ADAERL MEKEEHALRMAIGKSALALL+KM GE P
Sbjct:    8 SPEAKRARVLDSMVSAAERSNLLQ----EAGAEHMRRLELADAERLAMEKEEHALRMAIGKSALALLSKMAGEPP 78
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BLAST of mRNA_H-paniculata_contig2285.6100.1 vs. uniprot
Match: A0A6H5L718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L718_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.740e-20
Identity = 66/93 (70.97%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:   58 KKKPGRK-PKLE--ALMTPEAKRARALDSMVSAAERSNALQKGAVEAGAEHLRRQEVADAE-RLNMEKEEHALRMAIGKSALALLNKMVGEAP 324
            +KKPGRK  KL   +  +PEAKRAR LDS+VSAAERS  LQ    EAGAEH+RR  +ADAE RL MEKEEHALRMAIGKSALALL+KM GE P
Sbjct:  286 RKKPGRKLGKLNKSSFNSPEAKRARVLDSIVSAAERSILLQ----EAGAEHMRRLVLADAEQRLTMEKEEHALRMAIGKSALALLSKMAGEPP 374
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2285.6100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKY9_ECTSI5.980e-2681.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L718_9PHAE1.740e-2070.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2285contigH-paniculata_contig2285:7441..10905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_006070.1
Exons3
Model size396
Cds size396
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2285.6100.1prot_H-paniculata_contig2285.6100.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2285 7441..10905 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.7281542-CDS-H-paniculata_contig2285:7440..76051622929636.7281542-CDS-H-paniculata_contig2285:7440..7605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2285 7441..7605 -
1691480945.8768556-CDS-H-paniculata_contig2285:7440..76051691480945.8768556-CDS-H-paniculata_contig2285:7440..7605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2285 7441..7605 -
1622929636.741305-CDS-H-paniculata_contig2285:8504..86511622929636.741305-CDS-H-paniculata_contig2285:8504..8651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2285 8505..8651 -
1691480945.8856006-CDS-H-paniculata_contig2285:8504..86511691480945.8856006-CDS-H-paniculata_contig2285:8504..8651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2285 8505..8651 -
1622929636.7588043-CDS-H-paniculata_contig2285:10821..109051622929636.7588043-CDS-H-paniculata_contig2285:10821..10905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2285 10822..10905 -
1691480945.8946612-CDS-H-paniculata_contig2285:10821..109051691480945.8946612-CDS-H-paniculata_contig2285:10821..10905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2285 10822..10905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2285.6100.1

>prot_H-paniculata_contig2285.6100.1 ID=prot_H-paniculata_contig2285.6100.1|Name=mRNA_H-paniculata_contig2285.6100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
GAGAGDGSTRVLYNGTISYKKKPGRKPKLEALMTPEAKRARALDSMVSAA
ERSNALQKGAVEAGAEHLRRQEVADAERLNMEKEEHALRMAIGKSALALL
NKMVGEAPSAPLQQQHPHHQQPQQPQQHHSHP
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mRNA from alignment at H-paniculata_contig2285:7441..10905-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2285.6100.1 ID=mRNA_H-paniculata_contig2285.6100.1|Name=mRNA_H-paniculata_contig2285.6100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3465bp|location=Sequence derived from alignment at H-paniculata_contig2285:7441..10905- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGCGGGTGCAGGGGATGGGTCCACGCGAGTGTTGTACAATGGAACGAT
ATCTTACAAGAAGAAGCCAGGGAGGAAGCCGAAGGTGTGTTTTTGTGTTG
TGTGGTAGCGTGGTCATATGATGTTTTTTTTGTTGGTGGCTCTTACGGTG
CTTGATTCGTGTTGCTGGGGGTCTATATTCATGATGTCATAGTGTCATAC
GCATATTTTTTTTGTTGGCGAGGACGCGTTGGGGTGGCTGCTCTCTTCTG
TTAGGGGCACCGCGGGTATGATGAGTTGGGTGGGCAGAGCATCCCGTGTT
TACTCTTATCTCCCGTTTTTGTGTCTGTTTTCTTTCCCCTTTTTGTAGTC
GGACTTTACAAGAGTTTTACAGAGTGGGTTCATTGTGCAAGATATGTTCA
TGACCGAAGATTTGCTCTCCTGGATCAAATCCCCCCTTAGTGATGTTACT
TTGTTGATTACTGTAGTTCCCCTCCTCCTCCTCCTCCCAGCTCAGTTTAT
TTTCCTGGCGAAGCAAGAAAAGGTAATTGTTGGGAAATAGTGAAGAGTGA
TGTACAGCAAGGGGCTCCGTCCAGCAAGCGCAAAACAAGCGAAAATTCTT
CAATTCGGTGCATACGTTTCGCTGGATCTATCTGCACCTATCCCAAAATC
CTTGACACGAAAAAATCCCGTTCTACTCTTAGTAGTGATGTCTCTTGGAC
CGTTTCTCTCACCCTGCCAATGGATTATTATACGTTCCCACCCATATCCA
CTGAAGTGTTATAAGAGGTGCTGCTTTCAGCTTTTAGCGCTTGCACTCGA
ACCGATAACTGGTTGTTGCCTCACTACTGGAGGTGAAATGTTTTGGCACT
TGAAGACGATTGGTAAGACCGTGGTTGTTTGTTGAGCCAACTTCAGGCTT
ACCTCTGGCAGACTGAACCGGTTTTGATTTGGACTAACACAAAGCGAGTA
ATTTTTCATCTGCAAAACTCGTTCTAGATTCGATTATAACGGTTGAAGAC
CAAAATATTTCAAGTGGGGTGTTAAGCATTCACTACGATCAAGCTCGAAG
TGCACTTTGTGAAGAGGATAGCAAAAACGGGAGGCAGTTTTCATGTGCAA
GCTTTTCACACCCCGGACGAATATAAATAGTCAACACCTTAGACAAAACA
ATGTGTAGTATTTGCCAAACAATATAGAGTACGTCATCGGTTGTAAAACA
CCTTTTCATTCGCAATACCTTGGCGGACGACGCGTACACTATATATTTAT
AACGCCTTAGGTGATGATTTCCAAATTGTTCGTCTCAAAGTTTTGGCGTG
TTTATGGCGTGCTGGAGCCCATCTTTTTTCAATGCGCTTGCCCTCCGTCG
TTTTTGTTCAGATAAGCACCACGTGCTGACCGTTCACTATTCTTTTTGTA
TCATGAGCACATCGGATTGGTCGTCCGGCCAGGAGTGGGTGCCATCAATA
GACTTGAAGGCGCAGTATAGCCTTTCGTCATAGTTCGCATGTGTCATTTT
TTCCAGTCCCTCCATCTTTGTTTCCAAGTGTCGCCTCGCGCCAATTGAAG
CTGGGGTATGCGCGCTCGTGGTGTCGTGTTTCAATAACTGCAATTTCGTA
CTGGTGGTGGCTCTCATTTTTTTTGTTTTAAGCGTTGATGACATGTTGGC
GCCGAGGGATTAATGGTGATCACTTCTTTTTTTCCCCCCGATGCTTCAGT
CGTTCAATTAATCGAGAGCGCGGTCCAAATTTGGGGATGTAAATATCTGG
TGTTTACCTTTATCATCACGCGGTGCGGGCAGTAGTCACATTCCCTCGCC
AACTTCGCAATTGACGGCCGTGTATGTTTGGAGAATATTGTTCTCCTTTC
CGTGGGTAATTTTATCGCGTGCTACCTTCTTTGCCGATTAACGTTAAAAG
GACGAAGTCGTAAGACCCGAGAACTGAACCTACAACCCTATTGTGTGAAG
AGATTCTAATTTTGTCACTTTGACGACTGGTGTATTTTCCGAAGGGGGTT
TCCGTGGATCATGAACAGACGTCGGGGACGGGTGGCGTGATTTGAGATTG
TTTTGTTGTACGTCACGGTACTCGTGTTGTGCTTGGTTCAAGTAGTTTTT
CATGGGCCATTGATCAACTATACACTCTGGCGCTTTTATTTTCTTTGTCC
CTCTGTTGCTCGTGTGTTCGTGTGCTCGTGTGTGTACGGTCTTGCACTTG
GTACGCCCCCGGAATGAAATTGTTTTGGTGGTGATGATGTACTGTTCCAA
GAAGCTTGAAGCGCTCATGACGCCGGAGGCGAAGCGTGCTCGAGCTCTGG
ACTCGATGGTGTCGGCGGCTGAACGTTCCAATGCTCTCCAAAAGGGGGCG
GTGGAGGCTGGGGCAGAGCACCTTAGGAGACAAGAGGTTGCGGACGCTGA
GGTTTGTGAAGTATATCTGCCGTTCCTGGTTGTGTTGGTAATTGGTAATA
GGTAACTAGACAATAGTAGAACATGGTGCGTATATTTGAGGTTTTTAGCT
GCAGTTTTTGAGGTGCCGCGATATCACACCAGTTTCTAGATGGGAGAAAA
GGAAAGCCGCCATGTCTCTGTCCGTCTTGAGATCGCTGAGTTAGTTCTCT
AGGCACAACGATTGTCTTCCTGCAGCATGTCATCTTGCTCGTGGAGGAAC
GGTGCTGATTCAGTTTTATTATGTATGAGGGTTTCCCACTTTAACGTCCA
CTGGCTTTTGTTCACATTTTGATTGTTAAGATTTGACGGATGGCATGGAC
TGGTGTACAGTATAGCCCCCTGTCCGTCCGATCCCAAAGGGTCTGTGCTT
GATTGACGGCGTGTATCCAAGGTCTTTGAAAATAGAGAACAGGCGTAACT
CTATTTTTCTCGTAGTCTTGACCTTTGCATCACGATGGAGGGGGCACGAT
GTATGATCGGGTAAGGTTGCTCACGTAACTCCCTGGAGCTCCTCCCTGTC
AAGTGGTGATATCTTATTTTGATTATTTTTTGCTTTTAGCCTGGAGGGTC
GGGATTTTACTACAGTGCTGTCAAATTTGACAGTGCTATGCAAACCTTTT
AGCGCCTTAAAGGACCCTTCTTGTCTTGTGCTGATTATGTTGGTGTGTGG
TTGCAGGGACTCACATTATTGCAGCGATTGCGCACGAAGAGGAAAGACAT
CTTATTCCGCTTCCCACCTTCAACTTTTTCCCCATCTTCGCAACGTTTTT
TTCACGTGTACCGCTTCAACGAATGAAGAATTCATTAGTGAGTATCGTTG
TATTTGTCATTTTTTATTGCGTGTTTGTCTGTCGACATCCGCATGTGCAG
CGGTTGAATATGGAAAAGGAAGAGCACGCGCTGCGCATGGCGATCGGCAA
ATCGGCCTTGGCTCTTCTTAACAAGATGGTTGGAGAAGCACCGTCCGCCC
CACTGCAGCAGCAGCATCCACATCACCAACAACCCCAACAACCCCAACAG
CATCATTCACATCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2285:7441..10905-

>mRNA_H-paniculata_contig2285.6100.1 ID=mRNA_H-paniculata_contig2285.6100.1|Name=mRNA_H-paniculata_contig2285.6100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig2285:7441..10905- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGCGGGTGCAGGGGATGGGTCCACGCGAGTGTTGTACAATGGAACGAT
ATCTTACAAGAAGAAGCCAGGGAGGAAGCCGAAGGGAGCGGGTGCAGGGG
ATGGGTCCACGCGAGTGTTGTACAATGGAACGATATCTTACAAGAAGAAG
CCAGGGAGGAAGCCGAAGCTTGAAGCGCTCATGACGCCGGAGGCGAAGCG
TGCTCGAGCTCTGGACTCGATGGTGTCGGCGGCTGAACGTTCCAATGCTC
TCCAAAAGGGGGCGGTGGAGGCTGGGGCAGAGCACCTTAGGAGACAAGAG
GTTGCGGACGCTGAGCTTGAAGCGCTCATGACGCCGGAGGCGAAGCGTGC
TCGAGCTCTGGACTCGATGGTGTCGGCGGCTGAACGTTCCAATGCTCTCC
AAAAGGGGGCGGTGGAGGCTGGGGCAGAGCACCTTAGGAGACAAGAGGTT
GCGGACGCTGAGCGGTTGAATATGGAAAAGGAAGAGCACGCGCTGCGCAT
GGCGATCGGCAAATCGGCCTTGGCTCTTCTTAACAAGATGGTTGGAGAAG
CACCGTCCGCCCCACTGCAGCAGCAGCATCCACATCACCAACAACCCCAA
CAACCCCAACAGCATCATTCACATCCGCGGTTGAATATGGAAAAGGAAGA
GCACGCGCTGCGCATGGCGATCGGCAAATCGGCCTTGGCTCTTCTTAACA
AGATGGTTGGAGAAGCACCGTCCGCCCCACTGCAGCAGCAGCATCCACAT
CACCAACAACCCCAACAACCCCAACAGCATCATTCACATCCG
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