mRNA_H-paniculata_contig22833.6098.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22833.6098.1
Unique NamemRNA_H-paniculata_contig22833.6098.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22833.6098.1 vs. uniprot
Match: A0A5M9JXD2_MONFR (Uncharacterized protein n=1 Tax=Monilinia fructicola TaxID=38448 RepID=A0A5M9JXD2_MONFR)

HSP 1 Score: 82.8 bits (203), Expect = 1.330e-19
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:   10 SDHLYRSDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFV 153
            +D L R D+LFKL+LIGDSGVGKSCLLLRFADD +T+SYISTIGVDFV
Sbjct:   24 TDELNRYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFV 71
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BLAST of mRNA_H-paniculata_contig22833.6098.1 vs. uniprot
Match: A0A482S367_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S367_9ARCH)

HSP 1 Score: 82.4 bits (202), Expect = 1.700e-19
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:   19 LYRSDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFVS 156
            L  SD+LFKL+LIGDSGVGKSCLLLRFADD +T+SYISTIGVDFVS
Sbjct:   18 LLNSDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFVS 63
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BLAST of mRNA_H-paniculata_contig22833.6098.1 vs. uniprot
Match: A0A418DSF7_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DSF7_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.930e-19
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:   25 RSDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 150
            RSDHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYI+TIGVDF
Sbjct:    2 RSDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDF 43
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BLAST of mRNA_H-paniculata_contig22833.6098.1 vs. uniprot
Match: A0A812SN87_SYMMI (YPT1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SN87_SYMMI)

HSP 1 Score: 82.8 bits (203), Expect = 5.570e-19
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:   31 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 150
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDF
Sbjct:    7 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDF 46
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BLAST of mRNA_H-paniculata_contig22833.6098.1 vs. uniprot
Match: A0A5D6XVZ2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVZ2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.020e-19
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:   25 RSDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 150
            RSDHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYI+TIGVDF
Sbjct:    6 RSDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDF 47
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BLAST of mRNA_H-paniculata_contig22833.6098.1 vs. uniprot
Match: D7G118_ECTSI (Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G118_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 6.210e-19
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:   31 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 150
            DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF
Sbjct:    7 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 46
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BLAST of mRNA_H-paniculata_contig22833.6098.1 vs. uniprot
Match: A0A835Z965_9STRA (Rab1A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z965_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.740e-19
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:   31 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 150
            DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF
Sbjct:    7 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 46
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BLAST of mRNA_H-paniculata_contig22833.6098.1 vs. uniprot
Match: UPI001ECA16C8 (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=UPI001ECA16C8)

HSP 1 Score: 81.6 bits (200), Expect = 7.090e-19
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:   31 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 150
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYI+TIGVDF
Sbjct:    6 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDF 45
[Close]
BLAST of mRNA_H-paniculata_contig22833.6098.1 vs. uniprot
Match: A0A397AW93_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AW93_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.040e-18
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:   31 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFVS 156
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYI+TIGVDF S
Sbjct:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDFES 42
[Close]
BLAST of mRNA_H-paniculata_contig22833.6098.1 vs. uniprot
Match: A0A816KI72_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A816KI72_BRANA)

HSP 1 Score: 79.3 bits (194), Expect = 1.570e-18
Identity = 37/42 (88.10%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:   31 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFVS 156
            D+LFKL+LIGDSGVGKSCLLLRFADD++ DSYISTIGVDFVS
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFVS 47
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22833.6098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5M9JXD2_MONFR1.330e-1981.25Uncharacterized protein n=1 Tax=Monilinia fructico... [more]
A0A482S367_9ARCH1.700e-1984.78Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A418DSF7_9STRA2.930e-1995.24Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A812SN87_SYMMI5.570e-1997.50YPT1 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A5D6XVZ2_9STRA6.020e-1995.24Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
D7G118_ECTSI6.210e-19100.00Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835Z965_9STRA6.740e-19100.00Rab1A, rab family GTPase n=1 Tax=Tribonema minus T... [more]
UPI001ECA16C87.090e-1995.00Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A397AW93_9STRA1.040e-1892.86Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A816KI72_BRANA1.570e-1888.10(rape) hypothetical protein n=1 Tax=Brassica napus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22833contigH-paniculata_contig22833:1016..1174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog42099.EPrPV00000017129
KEGG koko:K07874
KEGG Pathwayko05134,map05134
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Rab1 family GTPase. Source PGD
EggNOG OGs1MBW6@121069,KOG0084@1,KOG0084@2759
COG Functional cat.TU
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Exons1
Model size159
Cds size159
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.5732372-CDS-H-paniculata_contig22833:1015..11741622929636.5732372-CDS-H-paniculata_contig22833:1015..1174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22833 1016..1174 +
1691480945.8257833-CDS-H-paniculata_contig22833:1015..11741691480945.8257833-CDS-H-paniculata_contig22833:1015..1174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22833 1016..1174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22833.6098.1prot_H-paniculata_contig22833.6098.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22833 1016..1174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22833.6098.1

>prot_H-paniculata_contig22833.6098.1 ID=prot_H-paniculata_contig22833.6098.1|Name=mRNA_H-paniculata_contig22833.6098.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MRLSDHLYRSDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF
VS*
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mRNA from alignment at H-paniculata_contig22833:1016..1174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22833.6098.1 ID=mRNA_H-paniculata_contig22833.6098.1|Name=mRNA_H-paniculata_contig22833.6098.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig22833:1016..1174+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTTTATCTGATCATCTGTATCGCAGTGATCACCTGTTTAAGCTGGT
GTTGATCGGCGATTCGGGCGTGGGCAAGTCTTGTCTGCTGCTTCGCTTCG
CGGATGATGCATTCACGGACAGCTACATCAGCACCATCGGGGTAGACTTT
GTGAGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22833:1016..1174+

>mRNA_H-paniculata_contig22833.6098.1 ID=mRNA_H-paniculata_contig22833.6098.1|Name=mRNA_H-paniculata_contig22833.6098.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig22833:1016..1174+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTTTATCTGATCATCTGTATCGCAGTGATCACCTGTTTAAGCTGGT
GTTGATCGGCGATTCGGGCGTGGGCAAGTCTTGTCTGCTGCTTCGCTTCG
CGGATGATGCATTCACGGACAGCTACATCAGCACCATCGGGGTAGACTTT
GTGAGTTGAATGCGTTTATCTGATCATCTGTATCGCAGTGATCACCTGTT
TAAGCTGGTGTTGATCGGCGATTCGGGCGTGGGCAAGTCTTGTCTGCTGC
TTCGCTTCGCGGATGATGCATTCACGGACAGCTACATCAGCACCATCGGG
GTAGACTTTGTGAGTTGA
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