mRNA_H-paniculata_contig22826.6095.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22826.6095.1
Unique NamemRNA_H-paniculata_contig22826.6095.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22826.6095.1 vs. uniprot
Match: A0A4Y9ZSL8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZSL8_9AGAM)

HSP 1 Score: 145 bits (367), Expect = 5.500e-40
Identity = 72/145 (49.66%), Postives = 93/145 (64.14%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVFKLNGGTISWCSRKQELVTWSSTEAEYVAAREAGKETGYLRELLGSIGFGCRGSTKLFEDN*SAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGGQLADILRKGLSRIQFQK 435
            L G+VDADWA DV DR+S +GY F L GG ISW S+KQ     SSTEAEY+ A  A KE  +LR  L  IG  C+ +T L  DN SA+ ++     H RTKHI +R+H +RE +  G + L+YV TG Q+AD+L KGL + +  K
Sbjct:  177 LTGYVDADWAGDVNDRRSISGYTFLLAGGAISWSSKKQNTTALSSTEAEYIVATHAAKEATWLRTFLSKIGRPCKAATLLLMDNQSAMAIAWNPAFHARTKHIDMRYHFLREKVEAGAINLQYVPTGDQVADVLMKGLVKAKHNK 321          
BLAST of mRNA_H-paniculata_contig22826.6095.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 151 bits (382), Expect = 9.850e-40
Identity = 74/145 (51.03%), Postives = 96/145 (66.21%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVFKLNGGTISWCSRKQELVTWSSTEAEYVAAREAGKETGYLRELLGSIGFGCRGSTKLFEDN*SAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGGQLADILRKGLSRIQFQK 435
            L G+VDADWA DV DR+S +GY F L GG +SW S+KQ     SSTEAEY+AA  A KE  +LR  LG IG  C+ +T L  DN SA+ +++    H RTKHI VR+H +RE +  G + L+YV TG Q+AD+L KGL + +  K
Sbjct:  983 LTGYVDADWAGDVNDRRSISGYTFLLAGGAVSWSSKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAKHDK 1127          
BLAST of mRNA_H-paniculata_contig22826.6095.1 vs. uniprot
Match: A0A4Z0A7X3_9AGAM (Uncharacterized protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0A7X3_9AGAM)

HSP 1 Score: 140 bits (352), Expect = 8.570e-39
Identity = 71/145 (48.97%), Postives = 92/145 (63.45%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVFKLNGGTISWCSRKQELVTWSSTEAEYVAAREAGKETGYLRELLGSIGFGCRGSTKLFEDN*SAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGGQLADILRKGLSRIQFQK 435
            L G+VDADWA DV DR S +GY F L GG ISW S+KQ +   SSTEAEY+AA  A KE  +L   L  IG  C+ +T L  DN SA+ ++     H +TKHI VR+H +RE +  G + L+YV  G Q+AD+L KGL + +  K
Sbjct:   79 LTGYVDADWAGDVNDRHSISGYTFLLAGGAISWSSKKQNMTALSSTEAEYIAAAHAAKEATWLCTFLSEIGRPCKAATLLLMDNQSAMAIAWNPVFHVQTKHIDVRYHFLREKVEAGAINLQYVPMGDQVADVLTKGLVKAKHDK 223          
BLAST of mRNA_H-paniculata_contig22826.6095.1 vs. uniprot
Match: UPI00193C8901 (secreted RxLR effector protein 161-like n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193C8901)

HSP 1 Score: 138 bits (348), Expect = 2.550e-38
Identity = 72/144 (50.00%), Postives = 96/144 (66.67%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVFKLNGGTISWCSRKQELVTWSSTEAEYVAAREAGKETGYLRELLGSIGFGCRGSTKLFEDN*SAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGGQLADILRKGLSRIQFQ 432
            +EG+VDAD+AED+E R+STTGYVF L  G ++W +++Q++VT S+TEAEYVAA  A KE  +LR LL  +   C  +TK+F DN S + L + S  H RTKHI VR H IRE +  G +  K V T  Q AD+  K L R +F+
Sbjct:   59 IEGYVDADFAEDLETRRSTTGYVFLLGNGAVTWTAQRQKMVTISTTEAEYVAAAAAAKEAIWLRRLLSGLERNCNRATKVFIDNQSTLRLVQNSEFHKRTKHIDVRCHFIREKVLSGKIDTKCVNTTKQKADLFTKALPRDRFK 202          
BLAST of mRNA_H-paniculata_contig22826.6095.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY)

HSP 1 Score: 139 bits (350), Expect = 2.830e-38
Identity = 73/145 (50.34%), Postives = 97/145 (66.90%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVFKLNGGTISWCSRKQELVTWSSTEAEYVAAREAGKETGYLRELLGSIGFGCRGSTKLFEDN*SAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGGQLADILRKGLSRIQFQK 435
            + GF D+D+A DV+ RKSTTGYVF +  G I+WCSR+Q+  + S+TEAEYVAA EA KE  +LR LL  I      + +L+ DN SAI L K    H RTKHI VR+H I+E  + G + ++YV++  QLADIL K L  ++F K
Sbjct:  101 VHGFSDSDYASDVDTRKSTTGYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADILTKPLVSVKFNK 245          
BLAST of mRNA_H-paniculata_contig22826.6095.1 vs. uniprot
Match: UPI000D3F8D86 (Ty1/Copia family ribonuclease HI n=1 Tax=Acinetobacter nosocomialis TaxID=106654 RepID=UPI000D3F8D86)

HSP 1 Score: 136 bits (343), Expect = 9.300e-38
Identity = 67/144 (46.53%), Postives = 96/144 (66.67%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVFKLNGGTISWCSRKQELVTWSSTEAEYVAAREAGKETGYLRELLGSIG-FGCRGSTKLFEDN*SAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGGQLADILRKGLSRIQF 429
            L+G+ DADWA D+E R+ST+GY F +NGG ISW S+KQ  V  SSTEAEY+A  EA +E  +L+  L  IG    + + K++EDN  +I L+K    H RTKHI +R+H +RE + +G + L+Y  T   LAD++ K ++ +QF
Sbjct:   29 LQGYSDADWAGDIETRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALTEATQEAIWLKAFLCEIGEMETKSAVKIYEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLEYCSTKDMLADLMTKPITAVQF 172          
BLAST of mRNA_H-paniculata_contig22826.6095.1 vs. uniprot
Match: A0A090C2V0_HYAAE (RxLR effector candidate protein (Fragment) n=3 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090C2V0_HYAAE)

HSP 1 Score: 138 bits (348), Expect = 1.320e-37
Identity = 69/143 (48.25%), Postives = 95/143 (66.43%), Query Frame = 1
Query:    7 GFVDADWAEDVEDRKSTTGYVFKLNGGTISWCSRKQELVTWSSTEAEYVAAREAGKETGYLRELLGSIG-FGCRGSTKLFEDN*SAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGGQLADILRKGLSRIQFQ 432
            G+ DADWA D+E R+ST+GYVF +NGG ISW S+KQ  V  SSTEAEY+A  EA KE  +L+  LG +G      + K+FEDN  +I L+K    H RTKHI +R+H +RE +  G + L+Y  T   LAD++ K ++ +QF+
Sbjct:  104 GYTDADWAGDIESRRSTSGYVFMMNGGCISWKSQKQRTVALSSTEAEYMALSEATKEAVWLKVFLGELGEMTSDEAIKMFEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVESGEVILEYCSTQDMLADMMTKPIAAVQFE 246          
BLAST of mRNA_H-paniculata_contig22826.6095.1 vs. uniprot
Match: UPI001EE6E994 (secreted RxLR effector protein 161-like n=1 Tax=Neodiprion lecontei TaxID=441921 RepID=UPI001EE6E994)

HSP 1 Score: 137 bits (345), Expect = 1.640e-37
Identity = 73/143 (51.05%), Postives = 95/143 (66.43%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVFKLNGGTISWCSRKQELVTWSSTEAEYVAAREAGKETGYLRELLGSIGFGCRGSTKLFEDN*SAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGGQLADILRKGLSRIQF 429
            L  + DAD+AED E R+STTGYVF+L GG I+W S++Q+LVT S+TEAEYV A    +E  +LR+LL  I + C  +T +F DN SAI L +    H RTKHI +R+H IRE + E IL ++YVQT  Q  DI  K   R +F
Sbjct:   96 LVDYSDADYAEDAETRRSTTGYVFQLAGGPITWASQRQKLVTLSTTEAEYVVASVTSREAIWLRKLLLDIEYPCADATVIFVDNQSAIRLVRNPEFHKRTKHIDIRYHYIREKVVEKILKIEYVQTKQQKGDIFTKAQPRERF 238          
BLAST of mRNA_H-paniculata_contig22826.6095.1 vs. uniprot
Match: UPI0006A737CF (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A737CF)

HSP 1 Score: 139 bits (351), Expect = 1.710e-37
Identity = 72/145 (49.66%), Postives = 96/145 (66.21%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVFKLNGGTISWCSRKQELVTWSSTEAEYVAAREAGKETGYLRELLGSIGFGCRGSTKLFEDN*SAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGGQLADILRKGLSRIQFQK 435
            L G+VD+D+A D +DRKST+G+ F   GG +SW S+KQ +VT S+TEAEYVAA     +  ++R +L  IGFG    T LF DN SAI LSK    H R+KHI VR+H +RE + EGI++ +Y  T  QLADI+ K +    F+K
Sbjct:  188 LVGYVDSDYAGDEDDRKSTSGFTFMFGGGAVSWSSKKQPIVTLSTTEAEYVAAANGACQAVWMRNMLTEIGFGQGDGTVLFCDNSSAIKLSKNLVLHGRSKHIHVRFHFLRELVNEGIISTEYCSTHEQLADIMTKPVKLEVFEK 332          
BLAST of mRNA_H-paniculata_contig22826.6095.1 vs. uniprot
Match: H3G5T8_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5T8_PHYRM)

HSP 1 Score: 134 bits (338), Expect = 2.260e-37
Identity = 67/144 (46.53%), Postives = 94/144 (65.28%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVFKLNGGTISWCSRKQELVTWSSTEAEYVAAREAGKETGYLRELLGSIG-FGCRGSTKLFEDN*SAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGGQLADILRKGLSRIQF 429
            L+G+ DADWA D+E R+ST+GY F +NGG ISW S+KQ  V  SSTEAEY+A  EA +E  +L+  L  +G      + K++EDN  +I L+K    H RTKHI +R+H +RE + +G + L+YV T   LAD++ K +   QF
Sbjct:   25 LQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAIPATQF 168          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22826.6095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y9ZSL8_9AGAM5.500e-4049.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9ZY34_9AGAM9.850e-4051.03Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Z0A7X3_9AGAM8.570e-3948.97Uncharacterized protein n=1 Tax=Hericium alpestre ... [more]
UPI00193C89012.550e-3850.00secreted RxLR effector protein 161-like n=1 Tax=So... [more]
A0A1Y1N3K4_PHOPY2.830e-3850.34Uncharacterized protein n=2 Tax=Photinus pyralis T... [more]
UPI000D3F8D869.300e-3846.53Ty1/Copia family ribonuclease HI n=1 Tax=Acinetoba... [more]
A0A090C2V0_HYAAE1.320e-3748.25RxLR effector candidate protein (Fragment) n=3 Tax... [more]
UPI001EE6E9941.640e-3751.05secreted RxLR effector protein 161-like n=1 Tax=Ne... [more]
UPI0006A737CF1.710e-3749.66uncharacterized mitochondrial protein AtMg00810-li... [more]
H3G5T8_PHYRM2.260e-3746.53Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22826contigH-paniculata_contig22826:2450..2884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score100.1
Seed ortholog evalue5.1e-19
Seed eggNOG ortholog7425.NV18849-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size435
Cds size255
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.2789748-UTR-H-paniculata_contig22826:2449..26291622929636.2789748-UTR-H-paniculata_contig22826:2449..2629Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22826 2450..2629 -
1691480945.692606-UTR-H-paniculata_contig22826:2449..26291691480945.692606-UTR-H-paniculata_contig22826:2449..2629Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22826 2450..2629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.307482-CDS-H-paniculata_contig22826:2629..28841622929636.307482-CDS-H-paniculata_contig22826:2629..2884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22826 2630..2884 -
1691480945.7041473-CDS-H-paniculata_contig22826:2629..28841691480945.7041473-CDS-H-paniculata_contig22826:2629..2884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22826 2630..2884 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22826.6095.1prot_H-paniculata_contig22826.6095.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22826 2630..2884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22826.6095.1

>prot_H-paniculata_contig22826.6095.1 ID=prot_H-paniculata_contig22826.6095.1|Name=mRNA_H-paniculata_contig22826.6095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
LEGFVDADWAEDVEDRKSTTGYVFKLNGGTISWCSRKQELVTWSSTEAEY
VAAREAGKETGYLRELLGSIGFGCRGSTKLFEDN*
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mRNA from alignment at H-paniculata_contig22826:2450..2884-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22826.6095.1 ID=mRNA_H-paniculata_contig22826.6095.1|Name=mRNA_H-paniculata_contig22826.6095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at H-paniculata_contig22826:2450..2884- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGTCGAGGACCGAAA GTCCACAACAGGATACGTTTTCAAGCTGAACGGTGGTACAATAAGTTGGT GCTCTAGAAAGCAAGAGTTAGTCACGTGGTCCAGTACAGAGGCCGAGTAC GTTGCTGCACGAGAAGCGGGAAAGGAGACGGGATATCTTAGGGAGTTACT AGGATCGATAGGTTTCGGATGCAGGGGGAGCACGAAATTGTTTGAGGACA ATTAATCAGCTATTAATCTCAGTAAGGGATCTGGCGCACACTGCAGGACA AAGCACATCGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCGAGAAGG AATATTGGCATTGAAATACGTGCAGACCGGCGGTCAACTTGCTGACATTT TAAGGAAAGGACTAAGCAGAATACAGTTTCAGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig22826:2450..2884-

>mRNA_H-paniculata_contig22826.6095.1 ID=mRNA_H-paniculata_contig22826.6095.1|Name=mRNA_H-paniculata_contig22826.6095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig22826:2450..2884- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGTCGAGGACCGAAA
GTCCACAACAGGATACGTTTTCAAGCTGAACGGTGGTACAATAAGTTGGT
GCTCTAGAAAGCAAGAGTTAGTCACGTGGTCCAGTACAGAGGCCGAGTAC
GTTGCTGCACGAGAAGCGGGAAAGGAGACGGGATATCTTAGGGAGTTACT
AGGATCGATAGGTTTCGGATGCAGGGGGAGCACGAAATTGTTTGAGGACA
ATTAACTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGTCGAGGAC
CGAAAGTCCACAACAGGATACGTTTTCAAGCTGAACGGTGGTACAATAAG
TTGGTGCTCTAGAAAGCAAGAGTTAGTCACGTGGTCCAGTACAGAGGCCG
AGTACGTTGCTGCACGAGAAGCGGGAAAGGAGACGGGATATCTTAGGGAG
TTACTAGGATCGATAGGTTTCGGATGCAGGGGGAGCACGAAATTGTTTGA
GGACAATTAA
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