mRNA_H-paniculata_contig22821.6093.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22821.6093.1
Unique NamemRNA_H-paniculata_contig22821.6093.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22821.6093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22821contigH-paniculata_contig22821:688..1467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size347
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.1441252-CDS-H-paniculata_contig22821:687..8091622929636.1441252-CDS-H-paniculata_contig22821:687..809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22821 688..809 +
1691480945.6523976-CDS-H-paniculata_contig22821:687..8091691480945.6523976-CDS-H-paniculata_contig22821:687..809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22821 688..809 +
1622929636.1616998-CDS-H-paniculata_contig22821:1244..14671622929636.1616998-CDS-H-paniculata_contig22821:1244..1467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22821 1245..1467 +
1691480945.6639547-CDS-H-paniculata_contig22821:1244..14671691480945.6639547-CDS-H-paniculata_contig22821:1244..1467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22821 1245..1467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22821.6093.1prot_H-paniculata_contig22821.6093.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22821 688..1467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22821.6093.1

>prot_H-paniculata_contig22821.6093.1 ID=prot_H-paniculata_contig22821.6093.1|Name=mRNA_H-paniculata_contig22821.6093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
HQQTPRLQHHHHRERHNHRDCCHHGHNPLRVLAARLLSRASGMEYDRSGN
AGGLRVEDGNNRVAASAAERDKEEKKAEGQEALLDDSNGGGSQNGRSGGG
LDFSGLVLGFGDRVA
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mRNA from alignment at H-paniculata_contig22821:688..1467+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22821.6093.1 ID=mRNA_H-paniculata_contig22821.6093.1|Name=mRNA_H-paniculata_contig22821.6093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=780bp|location=Sequence derived from alignment at H-paniculata_contig22821:688..1467+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCAACAAACACCCCGCCTCCAGCACCACCACCATCGTGAACGCCACAA
CCATCGTGATTGTTGTCATCATGGTCATAATCCATTGCGTGTGTTAGCAG
CGCGCCTGCTGTCAAGAGCAAGGTTGGTTCAATTTTCCTTATTAGAGAAC
AATGTACCTTGTTGGTTCACTATCCCCTGATAATTCACTGTACCTTGTTG
GGTCACTGCATCTTGTTTGCTGTGACCTGTTGGTCCGCTGTACCTTTTGG
ATCTCTGTGTTTTGCTAGTTCAATGTTCCTTATTGGATTACTCAATCTTG
TTGAATCGATGTACCTCATTGGTTGACTGTGTCCTGATGATTAACTATAC
CTTATTGGTTAACTCTAACCTGTGTGGGTCAATGTAACTTGTTTGCTGTA
CCCTGCTGGTCGGCTGTGCCTTATTGCATCACTTCGTCTTGTTGTTTGGA
TTGATGTGCCTTGTTGGTTCTTCACTATGTCTTATTGGATCACCGTACCT
TATTCATCCAACGTACCTTTTTGGTTCGCTGCACCCACTTGCCTCGCGTG
GTACCAGCGGGATGGAGTATGACAGGAGCGGTAACGCTGGCGGGTTGAGG
GTGGAGGATGGCAATAACAGGGTAGCGGCGTCGGCGGCGGAGCGGGACAA
GGAGGAGAAGAAGGCGGAGGGCCAGGAAGCGTTGCTCGATGATAGTAATG
GCGGTGGCAGTCAAAATGGTAGGAGCGGAGGTGGGCTGGATTTTTCGGGG
TTAGTTTTGGGGTTTGGAGATCGAGTGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig22821:688..1467+

>mRNA_H-paniculata_contig22821.6093.1 ID=mRNA_H-paniculata_contig22821.6093.1|Name=mRNA_H-paniculata_contig22821.6093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig22821:688..1467+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCAACAAACACCCCGCCTCCAGCACCACCACCATCGTGAACGCCACAA
CCATCGTGATTGTTGTCATCATGGTCATAATCCATTGCGTGTGTTAGCAG
CGCGCCTGCTGTCAAGAGCAAGCACCAACAAACACCCCGCCTCCAGCACC
ACCACCATCGTGAACGCCACAACCATCGTGATTGTTGTCATCATGGTCAT
AATCCATTGCGTGTGTTAGCAGCGCGCCTGCTGTCAAGAGCAAGCGGGAT
GGAGTATGACAGGAGCGGTAACGCTGGCGGGTTGAGGGTGGAGGATGGCA
ATAACAGGGTAGCGGCGTCGGCGGCGGAGCGGGACAAGGAGGAGAAGAAG
GCGGAGGGCCAGGAAGCGTTGCTCGATGATAGTAATGGCGGTGGCAGTCA
AAATGGTAGGAGCGGAGGTGGGCTGGATTTTTCGGGGTTAGTTTTGGGGT
TTGGAGATCGAGTGGCGCGGGATGGAGTATGACAGGAGCGGTAACGCTGG
CGGGTTGAGGGTGGAGGATGGCAATAACAGGGTAGCGGCGTCGGCGGCGG
AGCGGGACAAGGAGGAGAAGAAGGCGGAGGGCCAGGAAGCGTTGCTCGAT
GATAGTAATGGCGGTGGCAGTCAAAATGGTAGGAGCGGAGGTGGGCTGGA
TTTTTCGGGGTTAGTTTTGGGGTTTGGAGATCGAGTGGCG
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