mRNA_H-paniculata_contig22819.6092.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22819.6092.1
Unique NamemRNA_H-paniculata_contig22819.6092.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22819.6092.1 vs. uniprot
Match: A0A6H5JG94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG94_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.570e-12
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:    1 RYGNHTSADRHTPLVLDQVHQDLKNGRALNFPVEVATSIPGLRISPLGVVVKPNKVRIIHDITFTQHKKTDS--VNSQTDFKQAPPCELGHVLRIVLLRILTLR 306
            RYGNH+SAD H PL+ +++  D++  R L      A  IP LR+SP+GVVV  +K R+I+D++F    +T    +N+ T+    PPC     L   L  +++LR
Sbjct:   70 RYGNHSSADGHLPLLWEKLGNDVRRERCLVLEKTSAHEIPNLRVSPVGVVVT-HKPRVINDLSFNPTDRTTKGGLNADTNADTIPPCLCAGALPGFLTALVSLR 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22819.6092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JG94_9PHAE4.570e-1238.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22819contigH-paniculata_contig22819:1543..1848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.094025-CDS-H-paniculata_contig22819:1542..18481622929636.094025-CDS-H-paniculata_contig22819:1542..1848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22819 1543..1848 -
1691480945.639489-CDS-H-paniculata_contig22819:1542..18481691480945.639489-CDS-H-paniculata_contig22819:1542..1848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22819 1543..1848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22819.6092.1prot_H-paniculata_contig22819.6092.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22819 1543..1848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22819.6092.1

>prot_H-paniculata_contig22819.6092.1 ID=prot_H-paniculata_contig22819.6092.1|Name=mRNA_H-paniculata_contig22819.6092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
RYGNHTSADRHTPLVLDQVHQDLKNGRALNFPVEVATSIPGLRISPLGVV
VKPNKVRIIHDITFTQHKKTDSVNSQTDFKQAPPCELGHVLRIVLLRILT
LR
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mRNA from alignment at H-paniculata_contig22819:1543..1848-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22819.6092.1 ID=mRNA_H-paniculata_contig22819.6092.1|Name=mRNA_H-paniculata_contig22819.6092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig22819:1543..1848- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATACGGCAACCACACCAGTGCCGATAGGCATACCCCACTCGTTCTAGA
CCAAGTACATCAGGATCTGAAAAACGGTAGAGCACTCAATTTTCCCGTCG
AGGTGGCAACATCCATTCCTGGACTTCGAATTTCACCTTTGGGCGTGGTA
GTGAAACCTAACAAAGTCAGAATAATTCACGACATCACCTTCACCCAACA
CAAGAAAACCGACAGCGTAAATAGTCAAACGGACTTCAAACAAGCGCCGC
CATGTGAACTCGGTCACGTCTTACGAATAGTCTTACTCCGCATCCTCACT
CTGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22819:1543..1848-

>mRNA_H-paniculata_contig22819.6092.1 ID=mRNA_H-paniculata_contig22819.6092.1|Name=mRNA_H-paniculata_contig22819.6092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig22819:1543..1848- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATACGGCAACCACACCAGTGCCGATAGGCATACCCCACTCGTTCTAGA
CCAAGTACATCAGGATCTGAAAAACGGTAGAGCACTCAATTTTCCCGTCG
AGGTGGCAACATCCATTCCTGGACTTCGAATTTCACCTTTGGGCGTGGTA
GTGAAACCTAACAAAGTCAGAATAATTCACGACATCACCTTCACCCAACA
CAAGAAAACCGACAGCGTAAATAGTCAAACGGACTTCAAACAAGCGCCGC
CATGTGAACTCGGTCACGTCTTACGAATAGTCTTACTCCGCATCCTCACT
CTGAGAAGATACGGCAACCACACCAGTGCCGATAGGCATACCCCACTCGT
TCTAGACCAAGTACATCAGGATCTGAAAAACGGTAGAGCACTCAATTTTC
CCGTCGAGGTGGCAACATCCATTCCTGGACTTCGAATTTCACCTTTGGGC
GTGGTAGTGAAACCTAACAAAGTCAGAATAATTCACGACATCACCTTCAC
CCAACACAAGAAAACCGACAGCGTAAATAGTCAAACGGACTTCAAACAAG
CGCCGCCATGTGAACTCGGTCACGTCTTACGAATAGTCTTACTCCGCATC
CTCACTCTGAGA
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