mRNA_H-paniculata_contig22816.6091.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22816.6091.1
Unique NamemRNA_H-paniculata_contig22816.6091.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22816.6091.1 vs. uniprot
Match: D8LGP5_ECTSI (Farnesyl pyrophosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP5_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.240e-20
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    4 QVCRGSVLGWAIEWLQAFFLVADDVMDRSLTRRGQPCWYKV 126
            +VCRGS+LGW +EWLQAFFLVADDVMDRSLTRRGQPCWYKV
Sbjct:  227 EVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKV 267
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BLAST of mRNA_H-paniculata_contig22816.6091.1 vs. uniprot
Match: A0A6H5L554_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L554_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.360e-20
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    4 QVCRGSVLGWAIEWLQAFFLVADDVMDRSLTRRGQPCWYKV 126
            +VCRGS+LGW +EWLQAFFLVADDVMDRSLTRRGQPCWYKV
Sbjct:  237 EVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKV 277
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BLAST of mRNA_H-paniculata_contig22816.6091.1 vs. uniprot
Match: I0Z1I7_COCSC (Farnesyl diphosphate synthase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z1I7_COCSC)

HSP 1 Score: 79.7 bits (195), Expect = 1.760e-16
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    4 QVCRGSVLGWAIEWLQAFFLVADDVMDRSLTRRGQPCWYKVRGI 135
            Q+   +VLGW IEWLQAFFLVADD+MD S+TRRGQPCWY+  G+
Sbjct:   68 QMFEANVLGWCIEWLQAFFLVADDIMDNSITRRGQPCWYRAEGV 111
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BLAST of mRNA_H-paniculata_contig22816.6091.1 vs. uniprot
Match: A0A6T7TZ41_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A6T7TZ41_9EUKA)

HSP 1 Score: 79.3 bits (194), Expect = 1.920e-16
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    7 VCRGSVLGWAIEWLQAFFLVADDVMDRSLTRRGQPCWYKVRGI 135
            +C+ +VLGW IEWLQA+ LVADD+MD SLTRRGQPCWYK +G+
Sbjct:   37 MCKFAVLGWCIEWLQAWLLVADDIMDESLTRRGQPCWYKCKGV 79
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BLAST of mRNA_H-paniculata_contig22816.6091.1 vs. uniprot
Match: A0A7S3F4E0_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3F4E0_9VIRI)

HSP 1 Score: 79.3 bits (194), Expect = 2.750e-16
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    4 QVCRGSVLGWAIEWLQAFFLVADDVMDRSLTRRGQPCWYKV 126
            Q+ R  VLGW IEWLQAFFLVADD+MD S+TRRGQPCWYKV
Sbjct:   82 QLRRACVLGWCIEWLQAFFLVADDIMDASITRRGQPCWYKV 122
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BLAST of mRNA_H-paniculata_contig22816.6091.1 vs. uniprot
Match: D3AY22_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AY22_POLPP)

HSP 1 Score: 79.7 bits (195), Expect = 3.020e-16
Identity = 30/45 (66.67%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    4 QVCRGSVLGWAIEWLQAFFLVADDVMDRSLTRRGQPCWYKVRGII 138
            +V + +VLGW +EWLQAFFLVADD+MD+S+TRRGQPCWY+ R ++
Sbjct: 1209 EVFQANVLGWCVEWLQAFFLVADDIMDQSITRRGQPCWYRTRNML 1253
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BLAST of mRNA_H-paniculata_contig22816.6091.1 vs. uniprot
Match: A0A316UI74_9BASI (Uncharacterized protein n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316UI74_9BASI)

HSP 1 Score: 79.3 bits (194), Expect = 3.030e-16
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 PQVCRGSVLGWAIEWLQAFFLVADDVMDRSLTRRGQPCWYKVRGI 135
            P+  + ++LGW IE LQA+FLVADD+MDRS+TRRGQPCWYKV G+
Sbjct:   97 PEYLKAAILGWCIELLQAYFLVADDMMDRSITRRGQPCWYKVEGV 141
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BLAST of mRNA_H-paniculata_contig22816.6091.1 vs. uniprot
Match: A0A058ZFT9_FONAL (Isoprenoid biosynthesis-like protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZFT9_FONAL)

HSP 1 Score: 79.0 bits (193), Expect = 3.550e-16
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    4 QVCRGSVLGWAIEWLQAFFLVADDVMDRSLTRRGQPCWYK 123
            +V +  VLGW +EWLQAFFLVADD+MDRS+TRRGQPCWYK
Sbjct:   72 EVTKAFVLGWTVEWLQAFFLVADDIMDRSITRRGQPCWYK 111
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BLAST of mRNA_H-paniculata_contig22816.6091.1 vs. uniprot
Match: A0A835Z5G4_9STRA (Farnesyl pyrophosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.560e-16
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:   10 CRGSVLGWAIEWLQAFFLVADDVMDRSLTRRGQPCWYKV 126
            CR +VLGW IEWLQAFFLVADDVMD S TRRGQPCWY+V
Sbjct:  235 CRAAVLGWCIEWLQAFFLVADDVMDDSHTRRGQPCWYRV 273
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BLAST of mRNA_H-paniculata_contig22816.6091.1 vs. uniprot
Match: A0A0L0D6Z1_THETB (Geranyltranstransferase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D6Z1_THETB)

HSP 1 Score: 78.2 bits (191), Expect = 8.000e-16
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    4 QVCRGSVLGWAIEWLQAFFLVADDVMDRSLTRRGQPCWY 120
            ++C+ SVLGW +EWLQA+FLVADDVMDRS+TRR QPCWY
Sbjct:  103 ELCKASVLGWCVEWLQAYFLVADDVMDRSVTRRDQPCWY 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22816.6091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGP5_ECTSI3.240e-2090.24Farnesyl pyrophosphate synthase n=1 Tax=Ectocarpus... [more]
A0A6H5L554_9PHAE3.360e-2090.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
I0Z1I7_COCSC1.760e-1670.45Farnesyl diphosphate synthase n=1 Tax=Coccomyxa su... [more]
A0A6T7TZ41_9EUKA1.920e-1672.09Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S3F4E0_9VIRI2.750e-1680.49Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
D3AY22_POLPP3.020e-1666.67Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
A0A316UI74_9BASI3.030e-1668.89Uncharacterized protein n=1 Tax=Pseudomicrostroma ... [more]
A0A058ZFT9_FONAL3.550e-1677.50Isoprenoid biosynthesis-like protein n=1 Tax=Fonti... [more]
A0A835Z5G4_9STRA5.560e-1684.62Farnesyl pyrophosphate synthase n=1 Tax=Tribonema ... [more]
A0A0L0D6Z1_THETB8.000e-1676.92Geranyltranstransferase n=1 Tax=Thecamonas trahens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22816contigH-paniculata_contig22816:3810..3947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue4.4e-17
Seed eggNOG ortholog2880.D8LGP5
Preferred nameFDPS
KEGG rclassRC00279,RC00382
KEGG koko:K00787,ko:K05396,ko:K06220
KEGG ReactionR01658,R01874,R02003
KEGG Pathwayko00270,ko00900,ko01100,ko01110,ko01130,ko05164,ko05166,map00270,map00900,map01100,map01110,map01130,map05164,map05166
KEGG ModuleM00366,M00367
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004161,GO:0004337,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006066,GO:0006629,GO:0006644,GO:0006694,GO:0006695,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009987,GO:0016114,GO:0016125,GO:0016126,GO:0016740,GO:0016765,GO:0019216,GO:0019218,GO:0019222,GO:0019637,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045337,GO:0045338,GO:0045540,GO:0046165,GO:0046890,GO:0050789,GO:0050810,GO:0062012,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090181,GO:0090407,GO:0106118,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
EggNOG free text desc.dimethylallyltranstransferase activity
EggNOG OGsCOG0142@1,KOG0711@2759
Ec32 ortholog descriptionFarnesyl pyrophosphate synthase
Ec32 orthologEc-10_003020.1
EC2.5.1.1,2.5.1.10,4.4.1.15
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.0465426-CDS-H-paniculata_contig22816:3809..39471622929636.0465426-CDS-H-paniculata_contig22816:3809..3947Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22816 3810..3947 +
1691480945.6192143-CDS-H-paniculata_contig22816:3809..39471691480945.6192143-CDS-H-paniculata_contig22816:3809..3947Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22816 3810..3947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22816.6091.1prot_H-paniculata_contig22816.6091.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22816 3810..3947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22816.6091.1

>prot_H-paniculata_contig22816.6091.1 ID=prot_H-paniculata_contig22816.6091.1|Name=mRNA_H-paniculata_contig22816.6091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
PQVCRGSVLGWAIEWLQAFFLVADDVMDRSLTRRGQPCWYKVRGII
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mRNA from alignment at H-paniculata_contig22816:3810..3947+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22816.6091.1 ID=mRNA_H-paniculata_contig22816.6091.1|Name=mRNA_H-paniculata_contig22816.6091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig22816:3810..3947+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCAGGTTTGCCGCGGGAGCGTGTTGGGGTGGGCGATCGAGTGGCTGCA
GGCGTTCTTCTTGGTGGCCGATGACGTCATGGACCGGAGTTTGACTCGCC
GCGGCCAGCCCTGCTGGTACAAGGTCAGAGGAATAATT
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Coding sequence (CDS) from alignment at H-paniculata_contig22816:3810..3947+

>mRNA_H-paniculata_contig22816.6091.1 ID=mRNA_H-paniculata_contig22816.6091.1|Name=mRNA_H-paniculata_contig22816.6091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig22816:3810..3947+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCAGGTTTGCCGCGGGAGCGTGTTGGGGTGGGCGATCGAGTGGCTGCA
GGCGTTCTTCTTGGTGGCCGATGACGTCATGGACCGGAGTTTGACTCGCC
GCGGCCAGCCCTGCTGGTACAAGGTCAGAGGAATAATTCCCCAGGTTTGC
CGCGGGAGCGTGTTGGGGTGGGCGATCGAGTGGCTGCAGGCGTTCTTCTT
GGTGGCCGATGACGTCATGGACCGGAGTTTGACTCGCCGCGGCCAGCCCT
GCTGGTACAAGGTCAGAGGAATAATT
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