mRNA_H-paniculata_contig22806.6087.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22806.6087.1
Unique NamemRNA_H-paniculata_contig22806.6087.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22806.6087.1 vs. uniprot
Match: D7G0H6_ECTSI (Protein disulfide isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H6_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 7.560e-41
Identity = 68/101 (67.33%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:    1 VQEHPFLAVAFHAPGCGHCRRLHPSWIKAAELLEHHDPPIRLARLDVTSQSGMGAWKALGLQRVPTVKVFVGSI-EEPLPYKGRLDPDGIAAHLTMMQRVR 300
            VQ HPFL VAF++PGCGHCRRL PSW +AA+L+E    PIRLAR+DV+S+ GM AWKA GL+R+PTVKVFVG+  +EPLPY G LD +GIAAHL M++R R
Sbjct:   46 VQGHPFLVVAFYSPGCGHCRRLLPSWTQAAQLIEDQRLPIRLARMDVSSRGGMNAWKAFGLKRLPTVKVFVGNNPDEPLPYAGHLDANGIAAHLAMLERAR 146
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BLAST of mRNA_H-paniculata_contig22806.6087.1 vs. uniprot
Match: A0A2R5LP90_9ACAR (Protein disulfide isomerase (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LP90_9ACAR)

HSP 1 Score: 82.4 bits (202), Expect = 9.610e-18
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 VQEHPFLAVAFHAPGCGHCRRLHPSWIKAAELLEHHDPPIRLARLDVTSQSGMGAWKALGLQRVPTVKVFVGSIEEPLPYKGRLDPDGIAAHL 279
            V+EH  L V F AP CGHC+RL P + KAA  L+ HDPP+ LA++D TS SG       G+   PT+K+F    E    Y G  + +GI  H+
Sbjct:   34 VKEHDTLLVEFFAPWCGHCKRLAPEYEKAATSLKSHDPPVPLAKVDCTSDSGKDTCSKFGVSGYPTLKIFKQG-EFSAEYSGPREANGIIKHM 125
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BLAST of mRNA_H-paniculata_contig22806.6087.1 vs. uniprot
Match: UPI000900E723 (protein disulfide-isomerase-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI000900E723)

HSP 1 Score: 82.4 bits (202), Expect = 2.990e-16
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:    1 VQEHPFLAVAFHAPGCGHCRRLHPSWIKAAELLEHHDPPIRLARLDVTSQSGMGAWKALGLQRVPTVKVFVGSIEEPLPYKGRLDPDGIAAHL 279
            V +H F+ V F+AP CGHC+RL P + KAA LL  HDPPI LA++DV+ +          +Q  PT+K+          YKG  + DGI  +L
Sbjct:   47 VSKHKFIVVEFYAPWCGHCQRLAPEYEKAASLLSSHDPPITLAKIDVSDKVNSEIATKFKIQGFPTIKILRSGGNAIQEYKGPREADGIVTYL 139
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BLAST of mRNA_H-paniculata_contig22806.6087.1 vs. uniprot
Match: A0A293MN96_ORNER (Protein disulfide-isomerase (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MN96_ORNER)

HSP 1 Score: 81.3 bits (199), Expect = 7.570e-16
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 VQEHPFLAVAFHAPGCGHCRRLHPSWIKAAELLEHHDPPIRLARLDVTSQSGMGAWKALGLQRVPTVKVFVGSIEEPLPYKGRLDPDGIAAHL 279
            ++EH  L V F AP CGHC++L P + KAA  L+ HDPP+ LA++D TS SG       G+   PT+K+F    E    Y G  + +GI  H+
Sbjct:   34 IKEHDTLLVEFFAPWCGHCKKLAPEYEKAATALKSHDPPVPLAKVDCTSDSGKDTCSKYGVNGYPTLKIFKQG-EFSAEYSGPRESNGIVKHM 125
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BLAST of mRNA_H-paniculata_contig22806.6087.1 vs. uniprot
Match: A0A2I0BG48_9ASPA (Protein disulfide-isomerase n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0BG48_9ASPA)

HSP 1 Score: 77.4 bits (189), Expect = 1.740e-14
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:    1 VQEHPFLAVAFHAPGCGHCRRLHPSWIKAAELLEHHDPPIRLARLDVTSQSGMGAWKALGLQRVPTVKVFVGSIEEPLPYKGRLDPDGIAAHL 279
            + +HPF+ V F+AP CGHC+RL P + KAA +L  HD PI LA++D   +          ++  PT+K+     +    YKG  + DGI  +L
Sbjct:   48 IAKHPFIVVEFYAPWCGHCKRLEPEYEKAASILNKHDTPIVLAKVDANDEINKDLASQYEVKGFPTLKILRNGGKSIQDYKGPREADGIVEYL 140
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BLAST of mRNA_H-paniculata_contig22806.6087.1 vs. uniprot
Match: A0A7I8LA51_SPIIN (Protein disulfide-isomerase n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LA51_SPIIN)

HSP 1 Score: 76.6 bits (187), Expect = 3.270e-14
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 VQEHPFLAVAFHAPGCGHCRRLHPSWIKAAELLEHHDPPIRLARLDVTSQSGMGAWKALGLQRVPTVKVFVGSIEEPLPYKGRLDPDGIAAHL 279
            V++H F+ V F+AP CGHC++L P + KAA +L  HD PI LA++D   +S  G      ++  PT+ +     +    YKG  D +GI A+L
Sbjct:   60 VEKHKFIVVEFYAPWCGHCKKLAPEYEKAAAILNTHDYPIALAKVDANEESNKGLASKYEVKGFPTLIILRNEGKTIQEYKGPRDAEGIVAYL 152
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BLAST of mRNA_H-paniculata_contig22806.6087.1 vs. uniprot
Match: A0A4S4D713_CAMSI (Thioredoxin domain-containing protein n=2 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4D713_CAMSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.020e-13
Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:    1 VQEHPFLAVAFHAPGCGHCRRLHPSWIKAAELLEHHDPPIRLARLDVTSQSGMGAWKALGLQRVPTVKVFVGSIEEPLPYKGRL-DPDGIAAHL 279
            +  H F+ V F+ PGC  C++L P + K A +L  HDPP+ LA++DV+ +  M   +   +   PT+K+F         Y+G   D +GI A+L
Sbjct:   43 IGNHDFIVVHFYVPGCSFCQKLAPEYEKVASVLSSHDPPVTLAKVDVSEEKNMDLAREFKISSFPTIKIFRMGENHIQDYQGPTRDAEGIVAYL 136
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BLAST of mRNA_H-paniculata_contig22806.6087.1 vs. uniprot
Match: M1B3K6_SOLTU (Protein disulfide-isomerase n=6 Tax=Solanum TaxID=4107 RepID=M1B3K6_SOLTU)

HSP 1 Score: 74.3 bits (181), Expect = 2.100e-13
Identity = 32/93 (34.41%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    1 VQEHPFLAVAFHAPGCGHCRRLHPSWIKAAELLEHHDPPIRLARLDVTSQSGMGAWKALGLQRVPTVKVFVGSIEEPLPYKGRLDPDGIAAHL 279
            + +H  + V F+AP CG+C++L P + +AA +L +HDPP+ LA++D T        +   +  VP++K+F    +    YKG  + +GI A+L
Sbjct:   33 ISQHKMIVVQFYAPWCGYCKQLAPKYEEAASVLNNHDPPVILAKMDTTIPENAELARNYTINGVPSIKIFRNGGKTVHDYKGTRETEGIIAYL 125
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BLAST of mRNA_H-paniculata_contig22806.6087.1 vs. uniprot
Match: UPI000265789F (protein disulfide-isomerase A3 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI000265789F)

HSP 1 Score: 74.3 bits (181), Expect = 2.100e-13
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:    1 VQEHPFLAVAFHAPGCGHCRRLHPSWIKAAELLEHHDPPIRLARLDVTSQSGMGAWKALGLQRVPTVKVFVGSIEEPLPYKGRLDPDGIAAHL 279
            ++ H    V F+AP CGHC+RL P + +AA  L  HDPP+ LA +D T+ SG G     G+   PT+K+F    E    Y G  D DGI  ++
Sbjct:   33 IRIHEIALVKFYAPWCGHCKRLAPEFEEAAGTLIKHDPPVVLADVDCTADSGKGVCSKYGVTGYPTLKIFRHG-EVSGEYGGARDADGIVQYM 124
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BLAST of mRNA_H-paniculata_contig22806.6087.1 vs. uniprot
Match: A0A2G2ZJK3_CAPAN (Protein disulfide-isomerase n=5 Tax=Capsicum TaxID=4071 RepID=A0A2G2ZJK3_CAPAN)

HSP 1 Score: 72.4 bits (176), Expect = 1.010e-12
Identity = 32/93 (34.41%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:    1 VQEHPFLAVAFHAPGCGHCRRLHPSWIKAAELLEHHDPPIRLARLDVTSQSGMGAWKALGLQRVPTVKVFVGSIEEPLPYKGRLDPDGIAAHL 279
            +  H  + V F+AP CG+C++L P + +AA +L  HDPP+ LA++D T        +   L  VP +++F    +    YKG  + +GI A+L
Sbjct:   57 ISHHKMIVVEFYAPLCGYCQQLEPKYEQAASVLNSHDPPVILAKMDTTIPENAALARNYTLNGVPNIRIFRNGGKTVHEYKGTRETEGIIAYL 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22806.6087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0H6_ECTSI7.560e-4167.33Protein disulfide isomerase n=1 Tax=Ectocarpus sil... [more]
A0A2R5LP90_9ACAR9.610e-1844.09Protein disulfide isomerase (Fragment) n=1 Tax=Orn... [more]
UPI000900E7232.990e-1641.94protein disulfide-isomerase-like n=2 Tax=Ipomoea T... [more]
A0A293MN96_ORNER7.570e-1641.94Protein disulfide-isomerase (Fragment) n=1 Tax=Orn... [more]
A0A2I0BG48_9ASPA1.740e-1437.63Protein disulfide-isomerase n=1 Tax=Apostasia shen... [more]
A0A7I8LA51_SPIIN3.270e-1438.71Protein disulfide-isomerase n=1 Tax=Spirodela inte... [more]
A0A4S4D713_CAMSI1.020e-1335.11Thioredoxin domain-containing protein n=2 Tax=Came... [more]
M1B3K6_SOLTU2.100e-1334.41Protein disulfide-isomerase n=6 Tax=Solanum TaxID=... [more]
UPI000265789F2.100e-1340.86protein disulfide-isomerase A3 n=1 Tax=Galendromus... [more]
A0A2G2ZJK3_CAPAN1.010e-1234.41Protein disulfide-isomerase n=5 Tax=Capsicum TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22806contigH-paniculata_contig22806:357..917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score88.6
Seed ortholog evalue1.8e-15
Seed eggNOG ortholog554065.XP_005849773.1
Preferred namePDIL1-1
KEGG koko:K09580
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000322,GO:0000323,GO:0000325,GO:0000326,GO:0000327,GO:0003006,GO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005788,GO:0005794,GO:0005886,GO:0006457,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0009314,GO:0009416,GO:0009505,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009642,GO:0009644,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009892,GO:0009960,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010109,GO:0010154,GO:0010205,GO:0010941,GO:0012505,GO:0016020,GO:0016853,GO:0016860,GO:0016864,GO:0019222,GO:0022414,GO:0030312,GO:0031090,GO:0031323,GO:0031324,GO:0031974,GO:0032501,GO:0032502,GO:0033554,GO:0034975,GO:0034976,GO:0042221,GO:0042548,GO:0043067,GO:0043155,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043467,GO:0044422,GO:0044424,GO:0044432,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048316,GO:0048519,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061458,GO:0065007,GO:0070013,GO:0071944,GO:0098588,GO:0098805,GO:0140096,GO:1905156
EggNOG free text desc.Thioredoxin-like domain
EggNOG OGs34KHF@3041,37R3F@33090,COG0526@1,KOG0190@2759
EC5.3.4.1
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131,ko04147
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.7067678-CDS-H-paniculata_contig22806:356..4521622929635.7067678-CDS-H-paniculata_contig22806:356..452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22806 357..452 -
1691480945.4691956-CDS-H-paniculata_contig22806:356..4521691480945.4691956-CDS-H-paniculata_contig22806:356..452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22806 357..452 -
1622929635.719563-CDS-H-paniculata_contig22806:713..9171622929635.719563-CDS-H-paniculata_contig22806:713..917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22806 714..917 -
1691480945.4808633-CDS-H-paniculata_contig22806:713..9171691480945.4808633-CDS-H-paniculata_contig22806:713..917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22806 714..917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22806.6087.1prot_H-paniculata_contig22806.6087.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22806 357..917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22806.6087.1

>prot_H-paniculata_contig22806.6087.1 ID=prot_H-paniculata_contig22806.6087.1|Name=mRNA_H-paniculata_contig22806.6087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
VQEHPFLAVAFHAPGCGHCRRLHPSWIKAAELLEHHDPPIRLARLDVTSQ
SGMGAWKALGLQRVPTVKVFVGSIEEPLPYKGRLDPDGIAAHLTMMQRVR
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mRNA from alignment at H-paniculata_contig22806:357..917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22806.6087.1 ID=mRNA_H-paniculata_contig22806.6087.1|Name=mRNA_H-paniculata_contig22806.6087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=561bp|location=Sequence derived from alignment at H-paniculata_contig22806:357..917- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCAGGAGCACCCCTTCCTGGCTGTTGCGTTCCATGCCCCTGGATGCGG
GCACTGCCGCAGACTGCACCCGAGTTGGATTAAAGCCGCCGAGCTCTTAG
AGCACCATGACCCCCCCATACGCTTAGCGAGGCTGGACGTTACCAGTCAA
AGCGGGATGGGAGCGTGGAAGGCATTGGGACTGCAGAGAGTTCCTACGGT
CAAGGTAGCGGTGTCGTGCATAAAGTCCGTTAGGGACGGGGGCATACTCA
TATTTTGCACATTTCGGTTTTTAGACTGTTGACCACGCGTTCTCACGAGG
ACGGGGGAGGGCGAGAGGATAGCTTGAGTGATCTTGAGTGGTTCGTTGCG
ATCGATACGATACCGAGGGGGAAAACTCTCATGTGAACTACCTTTGCCGT
TCTTTCCTTCCACTCCTTTCTCCTTCTTCGCGTGCCGTGTTTGTTTTCTT
CACGCATAAGTACAGGTGTTCGTCGGTAGTATAGAAGAGCCTTTGCCGTA
CAAGGGGCGCCTAGACCCGGACGGGATTGCCGCACATCTTACCATGATGC
AGAGGGTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig22806:357..917-

>mRNA_H-paniculata_contig22806.6087.1 ID=mRNA_H-paniculata_contig22806.6087.1|Name=mRNA_H-paniculata_contig22806.6087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig22806:357..917- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCAGGAGCACCCCTTCCTGGCTGTTGCGTTCCATGCCCCTGGATGCGG
GCACTGCCGCAGACTGCACCCGAGTTGGATTAAAGCCGCCGAGCTCTTAG
AGCACCATGACCCCCCCATACGCTTAGCGAGGCTGGACGTTACCAGTCAA
AGCGGGATGGGAGCGTGGAAGGCATTGGGACTGCAGAGAGTTCCTACGGT
CAAGGTGCAGGAGCACCCCTTCCTGGCTGTTGCGTTCCATGCCCCTGGAT
GCGGGCACTGCCGCAGACTGCACCCGAGTTGGATTAAAGCCGCCGAGCTC
TTAGAGCACCATGACCCCCCCATACGCTTAGCGAGGCTGGACGTTACCAG
TCAAAGCGGGATGGGAGCGTGGAAGGCATTGGGACTGCAGAGAGTTCCTA
CGGTCAAGGTGTTCGTCGGTAGTATAGAAGAGCCTTTGCCGTACAAGGGG
CGCCTAGACCCGGACGGGATTGCCGCACATCTTACCATGATGCAGAGGGT
GAGGGTGTTCGTCGGTAGTATAGAAGAGCCTTTGCCGTACAAGGGGCGCC
TAGACCCGGACGGGATTGCCGCACATCTTACCATGATGCAGAGGGTGAGG
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