prot_H-paniculata_contig22805.6086.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig22805.6086.1
Unique Nameprot_H-paniculata_contig22805.6086.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length141
Homology
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BLAST of mRNA_H-paniculata_contig22805.6086.1 vs. uniprot
Match: A0A6H5KKY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY4_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 6.260e-71
Identity = 111/131 (84.73%), Postives = 124/131 (94.66%), Query Frame = 0 
Query:   10 NRPAQAVAWVKPSKNNQDHLVTGGDDGAVVIWTRVLDPKSDLHKVAVLHNKHTSAVRSACCPSISPTVVTGGADGRLVNYSIETASVQWDQLLRVSKEYHPAVNQLLEFPDNPYCLLVSAVDTARSHSMFT 140
            N+PAQAVAWV PSKNNQDHLVTGG+DG VVIWTRVLD +SDLHKVA+LH++HTSAVRSACCPSISPTVVTGGADGRLV+YSIETASVQW++LLRVSK YHP VN+LLEFPDNP+ LLVS VDTA+SHS+FT
Sbjct:  726 NKPAQAVAWVTPSKNNQDHLVTGGEDGHVVIWTRVLDAESDLHKVAILHSRHTSAVRSACCPSISPTVVTGGADGRLVSYSIETASVQWEELLRVSKTYHPMVNELLEFPDNPHSLLVSTVDTAKSHSLFT 856
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BLAST of mRNA_H-paniculata_contig22805.6086.1 vs. uniprot
Match: D8LT10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT10_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 2.430e-17
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 0 
Query:   10 NRPAQAVAWVKPSKNNQDHLVTGGDDGAVVIWTRVLDPKSDLHKVA 55
            ++PAQAVAWV PSKNNQDHLVTGG+DG VVIWTRVLD +SDLHKVA
Sbjct:  567 HKPAQAVAWVTPSKNNQDHLVTGGEDGHVVIWTRVLDAESDLHKVA 612
[Close]
BLAST of mRNA_H-paniculata_contig22805.6086.1 vs. uniprot
Match: A0A8K1C7B6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7B6_PYTOL)

HSP 1 Score: 62.8 bits (151), Expect = 9.430e-9
Identity = 46/133 (34.59%), Postives = 67/133 (50.38%), Query Frame = 0 
Query:   11 RPAQAVAWVKPSKNNQD----HLVTGGDDGAVVIWTR--VLDPKSDLHKVAVLHNKHTSAVRSACCPSISPTVVTGGADGRLVNY---SIETASVQWDQLLRVSKEYHPAVNQLLEFPDNPYCLLVSAVDTAR 134
            R   A+ W+ PS   +      LVT G D  +V+W     L  ++D  K  VLH +H S VRS C  S   ++ TGG DG ++ Y   S  T +V   +   +SK     +N +LE P NP  LL+S+V+ + 
Sbjct:  288 RGISAIEWI-PSGYGEGVSSRGLVTAGSDHGLVMWEEHEALKSQTDF-KWRVLHREHRSDVRSICMHSQRNSIYTGGLDGLVIRYDMNSFRTHTVMERRRPHISK-----INAVLENPHNPNLLLISSVEQSE 413
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22805.6086.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KKY4_9PHAE6.260e-7184.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT10_ECTSI2.430e-1784.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1C7B6_PYTOL9.430e-934.59Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 4..137
e-value: 2.9E-10
score: 41.5
NoneNo IPR availablePANTHERPTHR47232FAMILY NOT NAMEDcoord: 25..134
NoneNo IPR availablePANTHERPTHR47232:SF1TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEINcoord: 25..134
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 10..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22805contigH-paniculata_contig22805:462..3496 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22805.6086.1mRNA_H-paniculata_contig22805.6086.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig22805 462..3496 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig22805.6086.1 ID=prot_H-paniculata_contig22805.6086.1|Name=mRNA_H-paniculata_contig22805.6086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
MLYAKNKQTNRPAQAVAWVKPSKNNQDHLVTGGDDGAVVIWTRVLDPKSD
LHKVAVLHNKHTSAVRSACCPSISPTVVTGGADGRLVNYSIETASVQWDQ
LLRVSKEYHPAVNQLLEFPDNPYCLLVSAVDTARSHSMFT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf