mRNA_H-paniculata_contig22805.6086.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22805.6086.1
Unique NamemRNA_H-paniculata_contig22805.6086.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22805.6086.1 vs. uniprot
Match: A0A6H5KKY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY4_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 6.260e-71
Identity = 111/131 (84.73%), Postives = 124/131 (94.66%), Query Frame = 1 
Query:   28 NRPAQAVAWVKPSKNNQDHLVTGGDDGAVVIWTRVLDPKSDLHKVAVLHNKHTSAVRSACCPSISPTVVTGGADGRLVNYSIETASVQWDQLLRVSKEYHPAVNQLLEFPDNPYCLLVSAVDTARSHSMFT 420
            N+PAQAVAWV PSKNNQDHLVTGG+DG VVIWTRVLD +SDLHKVA+LH++HTSAVRSACCPSISPTVVTGGADGRLV+YSIETASVQW++LLRVSK YHP VN+LLEFPDNP+ LLVS VDTA+SHS+FT
Sbjct:  726 NKPAQAVAWVTPSKNNQDHLVTGGEDGHVVIWTRVLDAESDLHKVAILHSRHTSAVRSACCPSISPTVVTGGADGRLVSYSIETASVQWEELLRVSKTYHPMVNELLEFPDNPHSLLVSTVDTAKSHSLFT 856
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BLAST of mRNA_H-paniculata_contig22805.6086.1 vs. uniprot
Match: D8LT10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT10_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 2.430e-17
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:   28 NRPAQAVAWVKPSKNNQDHLVTGGDDGAVVIWTRVLDPKSDLHKVA 165
            ++PAQAVAWV PSKNNQDHLVTGG+DG VVIWTRVLD +SDLHKVA
Sbjct:  567 HKPAQAVAWVTPSKNNQDHLVTGGEDGHVVIWTRVLDAESDLHKVA 612
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BLAST of mRNA_H-paniculata_contig22805.6086.1 vs. uniprot
Match: A0A8K1C7B6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7B6_PYTOL)

HSP 1 Score: 62.8 bits (151), Expect = 9.430e-9
Identity = 46/133 (34.59%), Postives = 67/133 (50.38%), Query Frame = 1 
Query:   31 RPAQAVAWVKPSKNNQD----HLVTGGDDGAVVIWTR--VLDPKSDLHKVAVLHNKHTSAVRSACCPSISPTVVTGGADGRLVNY---SIETASVQWDQLLRVSKEYHPAVNQLLEFPDNPYCLLVSAVDTAR 402
            R   A+ W+ PS   +      LVT G D  +V+W     L  ++D  K  VLH +H S VRS C  S   ++ TGG DG ++ Y   S  T +V   +   +SK     +N +LE P NP  LL+S+V+ + 
Sbjct:  288 RGISAIEWI-PSGYGEGVSSRGLVTAGSDHGLVMWEEHEALKSQTDF-KWRVLHREHRSDVRSICMHSQRNSIYTGGLDGLVIRYDMNSFRTHTVMERRRPHISK-----INAVLENPHNPNLLLISSVEQSE 413
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22805.6086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KKY4_9PHAE6.260e-7184.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT10_ECTSI2.430e-1784.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1C7B6_PYTOL9.430e-934.59Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22805contigH-paniculata_contig22805:462..3496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue3.2e-10
Seed eggNOG ortholog115417.EPrPW00000020374
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Source PGD
EggNOG OGs1MET3@121069,KOG0265@1,KOG0265@2759
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-08_004400.1
COG Functional cat.A
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons3
Model size423
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22805.6086.1prot_H-paniculata_contig22805.6086.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22805 462..3496 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.6081512-CDS-H-paniculata_contig22805:461..5511622929635.6081512-CDS-H-paniculata_contig22805:461..551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22805 462..551 -
1691480945.4387958-CDS-H-paniculata_contig22805:461..5511691480945.4387958-CDS-H-paniculata_contig22805:461..551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22805 462..551 -
1622929635.638101-CDS-H-paniculata_contig22805:2207..23751622929635.638101-CDS-H-paniculata_contig22805:2207..2375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22805 2208..2375 -
1691480945.4499404-CDS-H-paniculata_contig22805:2207..23751691480945.4499404-CDS-H-paniculata_contig22805:2207..2375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22805 2208..2375 -
1622929635.6616251-CDS-H-paniculata_contig22805:3331..34961622929635.6616251-CDS-H-paniculata_contig22805:3331..3496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22805 3332..3496 -
1691480945.4591408-CDS-H-paniculata_contig22805:3331..34961691480945.4591408-CDS-H-paniculata_contig22805:3331..3496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22805 3332..3496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22805.6086.1

>prot_H-paniculata_contig22805.6086.1 ID=prot_H-paniculata_contig22805.6086.1|Name=mRNA_H-paniculata_contig22805.6086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
MLYAKNKQTNRPAQAVAWVKPSKNNQDHLVTGGDDGAVVIWTRVLDPKSD
LHKVAVLHNKHTSAVRSACCPSISPTVVTGGADGRLVNYSIETASVQWDQ
LLRVSKEYHPAVNQLLEFPDNPYCLLVSAVDTARSHSMFT*
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mRNA from alignment at H-paniculata_contig22805:462..3496-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22805.6086.1 ID=mRNA_H-paniculata_contig22805.6086.1|Name=mRNA_H-paniculata_contig22805.6086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3035bp|location=Sequence derived from alignment at H-paniculata_contig22805:462..3496- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTATGCGAAAAACAAACAAACAAACAGGCCGGCACAGGCGGTTGC
ATGGGTGAAGCCCTCGAAGAACAACCAGGACCACTTGGTGACGGGGGGGG
ATGATGGGGCGGTCGTCATCTGGACGAGGGTGTTGGACCCTAAGTCGGAC
CTGCACAAGGTTGCGGTAAGTAGATTTGTTTTTTGGTAGCTCTGTCTCTG
TCTCTGTCTCTCCCTCTTTCTCTCTGTTACTCTGTTTTCCTGTGTTGTCT
CTCTTTGGGTCTGTCTTTTTGTCTATCTGACTGTTTGATTGGCTGGCTGG
CTGGCTGGCTGGCTGGCTGTCTCTTGTTAGCATATGTTGTAGAACAAGCA
AGCAATATATATTTTTTGCTTTTATATATATATATATTTTTTCTAATATA
TATGTAAAGTTTCTCTCTCTATCTGTCTAAATGACTGTTTGGGTGACTGG
CTGGCTGTCTCTTGCGGTATCTGTGAGCAGATGTTGCCAAACGAACAAGC
AGGATATTTATTCGCGTTGGCATTTTGGCTGTTTTTTGGGGAGCGGCAGG
TGATGTTTTCCGGAACCTTGATCTGCCCTAGTCTGGTCTGGTCTGTCTGG
TCGTGTACCACCTTTATATATATACGTGTGGACGTTGTATGCAAATTTGT
GGTGCGTTAAATATATATATATATATATATATACATATACATATTGTAAA
GCCAGTATCGCGCAGGAGATATCGGATTCGGTAGATTTTCTCCCCAAAAA
CAGAAAGAAGGACTTTCATAAGGAGACAAGTATTCCGATATTGCCTGTAA
CATGGAGTTAAGTTAAGTTAAGTTAAGTTAAGTTTTCTTGTTTTCTTCCC
ACCAAAAGTTCTGCTAAAGCGGTCCCAGGAGATAGAAGGTGGCCTGAACA
CGTGAGGGTTGAGGTAGACGGGGTAGGTAAGGCCTATTTGAACTACATTT
GGCAACCCAGGAAAGAGCTGTTGACTCATCCAAAATCGTTGGTGACAGGA
GCAAAGCTACGCCCCTCCCGAGGACGAATAGTCAATGGTCTTGACAAGTA
CGCCATACAAAATATAAGCACAAGAATGTCTCTCTTCCCTTCCCAAAAAC
ATCTGATTGGTTGACGCGCAGGTCCTGCACAACAAGCACACGTCCGCTGT
GCGCAGCGCGTGTTGCCCTTCCATCTCGCCCACTGTCGTTACGGGCGGGG
CAGACGGGCGATTGGTAAATTATAGCATAGAGACCGCCAGCGTGCAGTGG
GACCAGCTGTTGAGGGTTTCCAAGGAATACCACCCCGCGGTGAGCTGCAG
TACGTGATGTGCTCTGCACACTTGTTACATACCATAAGGTTACACACAAA
TATATATATATATCGATTATACTATACTGTAGTGCAATAGATGAGTGAAT
GCCGTAGCCTGCGGATATTCTTCTGTACGATGTATGTTTGTTTACATAAT
GTTGGCAAATACATACCATAAGGTTACACACAAATATATATATATATATA
GACAACAGGTAAAACGCGCGCGAAGTGTTGGAGATTTCAATGAGCGGCTG
AAAAATGACGGAGCGAAGTTATAGCTTTGACTTGCAACGCTACCATCACG
AGCCAGACGCTAGCTTGTGCGGCATTTTTTCCGTATTACTTCATATATAC
ATATACATACATACATAGGGTTATATATATGATTGAGCGTTCCTGCTTTT
ACCTAATCTTCGAGATGAGTGTACCTAACTGAGATTTGTGGGTAATCTCA
GCCAAGGGTTACTATTAATACATTTTTTTTTTAATATGATCGACACCTCG
CCCTTATTGGTCATCATTTAATTTTGCTGATAAGTGTACACAACTGAAGC
CTTATCATGGGTACGATGGAGCTATCATGTAAGCTTTTAAAGCTTATTTA
GTTTTAATAAGTGTGACAAATGTGTGGGTTTTTGATTTAGGAATGGGAAA
GTTTCCGTGAGTGAAATATAGGAGGTCTTCTAGGGGCGGGAAGTCAGTCA
TTTTTTCATGTGAAAATTATTTAATGTTATACAATATTTAATATTCCCTT
GTGAAGGTTGTACTCCCCAGACAAATTCGAATTGAGCATTTGCAACTATC
TCGAACTACTATTATTTATCTTGGGTTAACACGTATTTTCTCGTTTACAA
GTATATAAATGGTTACTCTACAGATGGTTACCAGGTGGTCGTATACCCGG
TAAAGAGTCATACATGTAGGTCCTGTTTATTTTCCGGATGGTACTGGACA
GATATACTGATTACTCTCATCTGCCCGAGGTTTTCAATGCTCCATGGTAT
ATCGAGTAGTACAACACTTTATGTTGTTCGTGTCATCTGCCCCAACTCAA
GCAGATGCCGTATTTTTGTGTTACAGATTTCTCGTCTTTGTCCAGGGCGG
GAAGGTTGTCGTGCCTCATTGTGTGCCTGGTCGAAGAGGTGTGGTAAGTC
GTGATACTCGGTCATGACGAGATCGAAATGTATGTCCTGTGAGCAGAACT
CTCTCGATATACCAAGCGGCATACCCAAACATTTTCATCAAATCCATTCG
AAAGTCGCGTTCGCCTGGTGGGCGTGTGTGGTTTGTTGTGGTTAGGCTTG
TGACAGTGGTGATTAGGGGGGGAGTCACTCGTTCGTGTACGGTTCTCTCA
GCAAAGCGTACGCGCAGATCGCATAATGGGGTCGGGTCGGCTAGGCTCCA
GGCTATGAGTTAGCACTCGCCAAAATACGAGTACGCTTACGTGTACATGG
AGGGCTCTACCTCTACAATGAGTGTCTCAATATTCCCTCTTCTTACTGTA
TTACGTGTCATCACATGTTTTCATGATTGTCCCGCGAAATGAACTTTTCG
GCCGTATCTGTTGGGTCATAGGAAATGTACAGGAATGATGAAACGAGTAG
TACCTATTCGTAAGGCCCCGCCCGTCCGTGATGTCGACCAAACAGGTGAA
CCAGCTGCTCGAGTTTCCAGACAATCCATACTGTCTGTTGGTTAGCGCGG
TGGACACGGCCAGGAGCCACAGCATGTTCACGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig22805:462..3496-

>mRNA_H-paniculata_contig22805.6086.1 ID=mRNA_H-paniculata_contig22805.6086.1|Name=mRNA_H-paniculata_contig22805.6086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig22805:462..3496- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTATGCGAAAAACAAACAAACAAACAGGCCGGCACAGGCGGTTGC
ATGGGTGAAGCCCTCGAAGAACAACCAGGACCACTTGGTGACGGGGGGGG
ATGATGGGGCGGTCGTCATCTGGACGAGGGTGTTGGACCCTAAGTCGGAC
CTGCACAAGGTTGCGATGCTCTATGCGAAAAACAAACAAACAAACAGGCC
GGCACAGGCGGTTGCATGGGTGAAGCCCTCGAAGAACAACCAGGACCACT
TGGTGACGGGGGGGGATGATGGGGCGGTCGTCATCTGGACGAGGGTGTTG
GACCCTAAGTCGGACCTGCACAAGGTTGCGGTCCTGCACAACAAGCACAC
GTCCGCTGTGCGCAGCGCGTGTTGCCCTTCCATCTCGCCCACTGTCGTTA
CGGGCGGGGCAGACGGGCGATTGGTAAATTATAGCATAGAGACCGCCAGC
GTGCAGTGGGACCAGCTGTTGAGGGTTTCCAAGGAATACCACCCCGCGGT
CCTGCACAACAAGCACACGTCCGCTGTGCGCAGCGCGTGTTGCCCTTCCA
TCTCGCCCACTGTCGTTACGGGCGGGGCAGACGGGCGATTGGTAAATTAT
AGCATAGAGACCGCCAGCGTGCAGTGGGACCAGCTGTTGAGGGTTTCCAA
GGAATACCACCCCGCGGTGAACCAGCTGCTCGAGTTTCCAGACAATCCAT
ACTGTCTGTTGGTTAGCGCGGTGGACACGGCCAGGAGCCACAGCATGTTC
ACGTAAGTGAACCAGCTGCTCGAGTTTCCAGACAATCCATACTGTCTGTT
GGTTAGCGCGGTGGACACGGCCAGGAGCCACAGCATGTTCACGTAA
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