mRNA_H-paniculata_contig228.6078.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig228.6078.1
Unique NamemRNA_H-paniculata_contig228.6078.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig228.6078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig228contigH-paniculata_contig228:3382..5093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size520
Cds size390
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig228.6078.1prot_H-paniculata_contig228.6078.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig228 4704..5093 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.7848237-UTR-H-paniculata_contig228:3381..34961622929634.7848237-UTR-H-paniculata_contig228:3381..3496Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig228 3382..3496 +
1691480944.9856112-UTR-H-paniculata_contig228:3381..34961691480944.9856112-UTR-H-paniculata_contig228:3381..3496Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig228 3382..3496 +
1622929634.8023584-UTR-H-paniculata_contig228:4690..47031622929634.8023584-UTR-H-paniculata_contig228:4690..4703Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig228 4691..4703 +
1691480944.9951177-UTR-H-paniculata_contig228:4690..47031691480944.9951177-UTR-H-paniculata_contig228:4690..4703Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig228 4691..4703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.8176582-CDS-H-paniculata_contig228:4703..50931622929634.8176582-CDS-H-paniculata_contig228:4703..5093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig228 4704..5093 +
1691480945.0136898-CDS-H-paniculata_contig228:4703..50931691480945.0136898-CDS-H-paniculata_contig228:4703..5093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig228 4704..5093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig228.6078.1

>prot_H-paniculata_contig228.6078.1 ID=prot_H-paniculata_contig228.6078.1|Name=mRNA_H-paniculata_contig228.6078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MTTCVNSDAADAGPPTPTPTPTPTRGIAVGAVPGGSGLNSTSTNNNTANK
NNSDAVLWNGPTATANTPPAVTNINPRPTTTIPIPCRPEGPTAGSDGFQW
RTAANGGREGNIEVETKGAVARKFCLAEAC
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mRNA from alignment at H-paniculata_contig228:3382..5093+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig228.6078.1 ID=mRNA_H-paniculata_contig228.6078.1|Name=mRNA_H-paniculata_contig228.6078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1712bp|location=Sequence derived from alignment at H-paniculata_contig228:3382..5093+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGATATGTCAATCGTCGAAGGCAACTTGTGACATAGCCAACATCGTGC
GTGGTGTTTACCAAGAAAATAAACTTGAGAGGATACGGACATAATCGTTT
GGTGCGGTAGACACGGTGAGTGGAGACACGGTGATTGGGGCTCTGTGCAC
TCTGAGAGGTTTTGAAAAAGTGCACGATACACTTATTGACGCAAAACTCA
AATAAAATAATGAGCGAGGAACGCAAAATACACGGGACTAAAAGAGGGAG
TGTTGGAGTACGGGGGAGAGAGGGGGGGGGGGAAGAAGCGGGGGAGAAAG
GGGAGGGGAAGAGAAGCGAGGAAGGAACATCGCCAGGGTCCTCATTGTTG
CGTTGTGCTCATACGGGTAGGAGGGCTGTCATGCTGTTGCACAAATGTGC
TTTTGGCAGAAGAAAAAGGTAGGAACTTTTGATCGTATCTGAGTTGTATT
TGATCGCGTTATCAGCTTTCACACATAACGGCCCTACTACTTTTCCAAAA
CTGATAACTGATTGGACAGTATAGTATCCTTCGAGTCGTTGCCATTTGTC
GTACTATATGATAGCTATCAATAGATTATTGCTCTGATTTCGTTCTATGC
AGCGGTGGCAAAGTATCTTCAGACCTGCTCTGGCATGACTGGCTGTTTGT
ATCATCCAGATTTTATTTGCGGAAATCTTCGCATTCCTTCTTTCTTTTCT
TACAGAGTGTAAATTATGGAGATCCCAGTGAATTTACTTGTCCTGCCTCG
ATTTTCTTTCACAGTGAACACTGGAAAAAGCAACGAACCTCCTCAGTTTT
GGATATCCTTCGTATTGTAGTATGTACTGCATGTATTACATGTACTGCAT
GTACTGTGCATGTACATCACACACCGTGTTCGTGATCATGATGGCTGCCC
TCTCTGTTGATGCTTCTGTCGCTCAACACAGGTATTGAGAGTCAGACAGA
AAGCGTCGTGTTTGGCATCAGTTAGCCCAACTCTCCCGGAAAATATGTTT
TGGATTGCAAAGCGTGTGTACACACGTGCGTCGTGCATTCCGTTGCTGCT
CCAGTAGAAAGCACAACAGATGTTGGTGCTCATAGGCGTTGGCAAGCAAT
TGAAGCGTTACGGTTGCTCTCTTATGGCGCCGCATGTAACGCCGACACAC
GCTCTCCCTGCCTCGCTCGTAGCTCAAGACCTCGGTGAGTCTGTGTTGTG
TCATCAGGGAAACAATCGTTTTTTAGTTGTGATTTGGTCTCGCGATCGCC
GTTCCACTCACGTCCTCATTTTTTGGACCCCACTTTCTTCTGTTCGGTCT
GTCCCTCAGAACGAATATCACGATGACCACGTGCGTAAACAGCGATGCCG
CTGACGCAGGACCCCCAACGCCAACGCCAACACCAACACCAACACGGGGT
ATAGCGGTAGGCGCAGTCCCCGGAGGAAGCGGCTTGAACAGCACCAGTAC
CAACAACAACACCGCCAACAAGAACAATAGCGACGCGGTGCTTTGGAATG
GGCCAACCGCCACCGCCAACACCCCTCCTGCCGTTACCAATATCAACCCC
CGTCCTACGACTACTATTCCTATTCCGTGTCGACCAGAAGGACCTACTGC
TGGAAGTGATGGGTTCCAGTGGCGAACAGCGGCAAATGGCGGGAGAGAGG
GAAATATTGAGGTTGAGACGAAGGGCGCAGTTGCCAGGAAATTTTGCTTG
GCTGAGGCATGT
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Coding sequence (CDS) from alignment at H-paniculata_contig228:3382..5093+

>mRNA_H-paniculata_contig228.6078.1 ID=mRNA_H-paniculata_contig228.6078.1|Name=mRNA_H-paniculata_contig228.6078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig228:3382..5093+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCACGTGCGTAAACAGCGATGCCGCTGACGCAGGACCCCCAACGCC
AACGCCAACACCAACACCAACACGGGGTATAGCGGTAGGCGCAGTCCCCG
GAGGAAGCGGCTTGAACAGCACCAGTACCAACAACAACACCGCCAACAAG
AACAATAGCGACGCGGTGCTTTGGAATGGGCCAACCGCCACCGCCAACAC
CCCTCCTGCCGTTACCAATATCAACCCCCGTCCTACGACTACTATTCCTA
TTCCGTGTCGACCAGAAGGACCTACTGCTGGAAGTGATGGGTTCCAGTGG
CGAACAGCGGCAAATGGCGGGAGAGAGGGAAATATTGAGGTTGAGACGAA
GGGCGCAGTTGCCAGGAAATTTTGCTTGGCTGAGGCATGTATGACCACGT
GCGTAAACAGCGATGCCGCTGACGCAGGACCCCCAACGCCAACGCCAACA
CCAACACCAACACGGGGTATAGCGGTAGGCGCAGTCCCCGGAGGAAGCGG
CTTGAACAGCACCAGTACCAACAACAACACCGCCAACAAGAACAATAGCG
ACGCGGTGCTTTGGAATGGGCCAACCGCCACCGCCAACACCCCTCCTGCC
GTTACCAATATCAACCCCCGTCCTACGACTACTATTCCTATTCCGTGTCG
ACCAGAAGGACCTACTGCTGGAAGTGATGGGTTCCAGTGGCGAACAGCGG
CAAATGGCGGGAGAGAGGGAAATATTGAGGTTGAGACGAAGGGCGCAGTT
GCCAGGAAATTTTGCTTGGCTGAGGCATGT
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