mRNA_H-paniculata_contig228.6081.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig228.6081.1
Unique NamemRNA_H-paniculata_contig228.6081.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig228.6081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig228contigH-paniculata_contig228:19424..20105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size198
Cds size177
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig228.6081.1prot_H-paniculata_contig228.6081.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig228 19424..20084 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.7149463-CDS-H-paniculata_contig228:19423..195231622929634.7149463-CDS-H-paniculata_contig228:19423..19523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig228 19424..19523 -
1691480944.9577484-CDS-H-paniculata_contig228:19423..195231691480944.9577484-CDS-H-paniculata_contig228:19423..19523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig228 19424..19523 -
1622929634.728927-CDS-H-paniculata_contig228:20007..200841622929634.728927-CDS-H-paniculata_contig228:20007..20084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig228 20008..20084 -
1691480944.968884-CDS-H-paniculata_contig228:20007..200841691480944.968884-CDS-H-paniculata_contig228:20007..20084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig228 20008..20084 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.7437828-UTR-H-paniculata_contig228:20084..201051622929634.7437828-UTR-H-paniculata_contig228:20084..20105Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig228 20085..20105 -
1691480944.977031-UTR-H-paniculata_contig228:20084..201051691480944.977031-UTR-H-paniculata_contig228:20084..20105Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig228 20085..20105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig228.6081.1

>prot_H-paniculata_contig228.6081.1 ID=prot_H-paniculata_contig228.6081.1|Name=mRNA_H-paniculata_contig228.6081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MDDESIAAADSLRSTTVASCSKLDCRSKEELGDATITTSTICGTYRAALE
VEMGDDGRN
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mRNA from alignment at H-paniculata_contig228:19424..20105-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig228.6081.1 ID=mRNA_H-paniculata_contig228.6081.1|Name=mRNA_H-paniculata_contig228.6081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=682bp|location=Sequence derived from alignment at H-paniculata_contig228:19424..20105- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGAAGCAATAAAGGCAGCGATGGACGACGAGTCAATAGCGGCGGCTGA
CTCCTTGCGTTCTACTACCGTAGCATCTTGTTCGAAGCTCGATTGCAGGT
GGGTGTAAAATGCCATTGTACCGTGTTAAACGCCGAGACGATTTTGATTG
CACCTTCGAAGGATAATATTATTTGATCATAACGAAGATGTAATGTGGCA
CCTCGTGTTAGGATCAATTGCTGAAAATCATGTCTTTAGTAAAGTCTAGA
TGTCGGAGGTCATTTGTTTCGTGTTTTGGATGAATTTGAGAACTACAGTG
GGTCGTAATATCTCGAGACAAACATGCCCAAATTGTTTGACTTGTTGTGT
GAAACGTTGAGTGCAGCAAGAATATTACTTCTACAGTGCCCTTTTTCACA
TTACCTGGAAGGTTTACAGGTGATAAGGCGTACAATGTGTGCTGGCGTAT
TCACCGGTATCGCCACGTTGATGATGGTGTCGAGTAGACAGGCATTCATT
TGGCATGAATCTTCTTTTTTTCAAGACCGTACGCTGTTTGCAGAAACCTT
AGATATTGCCGTAACCGCTGCCATATTAAAAGGAGCAAGGAAGAGCTGGG
AGATGCTACAATAACGACATCCACGATTTGCGGCACATACCGCGCTGCCC
TCGAGGTGGAGATGGGTGATGACGGTCGTAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig228:19424..20105-

>mRNA_H-paniculata_contig228.6081.1 ID=mRNA_H-paniculata_contig228.6081.1|Name=mRNA_H-paniculata_contig228.6081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig228:19424..20105- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGACGAGTCAATAGCGGCGGCTGACTCCTTGCGTTCTACTACCGT
AGCATCTTGTTCGAAGCTCGATTGCAGATGGACGACGAGTCAATAGCGGC
GGCTGACTCCTTGCGTTCTACTACCGTAGCATCTTGTTCGAAGCTCGATT
GCAGGAGCAAGGAAGAGCTGGGAGATGCTACAATAACGACATCCACGATT
TGCGGCACATACCGCGCTGCCCTCGAGGTGGAGATGGGTGATGACGGTCG
TAACGAGCAAGGAAGAGCTGGGAGATGCTACAATAACGACATCCACGATT
TGCGGCACATACCGCGCTGCCCTCGAGGTGGAGATGGGTGATGACGGTCG
TAAC
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