mRNA_H-paniculata_contig228.6080.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig228.6080.1
Unique NamemRNA_H-paniculata_contig228.6080.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig228.6080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig228contigH-paniculata_contig228:13753..15468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size777
Cds size774
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig228.6080.1prot_H-paniculata_contig228.6080.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig228 13755..15468 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.641689-CDS-H-paniculata_contig228:13754..138381622929634.641689-CDS-H-paniculata_contig228:13754..13838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig228 13755..13838 -
1691480944.9115615-CDS-H-paniculata_contig228:13754..138381691480944.9115615-CDS-H-paniculata_contig228:13754..13838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig228 13755..13838 -
1622929634.6638129-CDS-H-paniculata_contig228:14342..144521622929634.6638129-CDS-H-paniculata_contig228:14342..14452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig228 14343..14452 -
1691480944.9245412-CDS-H-paniculata_contig228:14342..144521691480944.9245412-CDS-H-paniculata_contig228:14342..14452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig228 14343..14452 -
1622929634.679722-CDS-H-paniculata_contig228:14888..154681622929634.679722-CDS-H-paniculata_contig228:14888..15468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig228 14889..15468 -
1691480944.9430606-CDS-H-paniculata_contig228:14888..154681691480944.9430606-CDS-H-paniculata_contig228:14888..15468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig228 14889..15468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig228.6080.1

>prot_H-paniculata_contig228.6080.1 ID=prot_H-paniculata_contig228.6080.1|Name=mRNA_H-paniculata_contig228.6080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=258bp
IDLLNVVAPLECGSEAINKDGSAESMSPPHPPPRLMKRYGWSLNDCTMSS
WIQKNSASASSNKTESAALPAELSIRINMESSPGVVGSNGENSEQSANAF
VTATQVARFGVDRDFTTNRVGGFAKGREYKNVIRGSQMLGPRSDGGDKFE
ADIAGNRERLTSNRACRSLDPRRERSMAAVVAEVDAAHVVEFSRPDMDIR
LELQTSPGKKFGVQIVNDDGIVSAHHWSKRAAIYAFWALPGGRPNPAEKA
GLCVGDVI
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mRNA from alignment at H-paniculata_contig228:13753..15468-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig228.6080.1 ID=mRNA_H-paniculata_contig228.6080.1|Name=mRNA_H-paniculata_contig228.6080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1716bp|location=Sequence derived from alignment at H-paniculata_contig228:13753..15468- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGATCTGCTGAACGTGGTGGCACCACTTGAATGTGGTTCCGAAGCAAT
TAACAAGGATGGGTCGGCCGAGTCTATGTCGCCGCCTCACCCACCACCGA
GGCTTATGAAACGCTACGGCTGGTCTTTAAACGACTGTACGATGTCTTCC
TGGATCCAGAAGAATAGTGCCAGCGCTAGTTCGAATAAGACAGAGTCGGC
GGCATTACCAGCTGAACTTTCAATAAGAATCAATATGGAAAGTAGTCCGG
GTGTTGTCGGCAGCAACGGCGAAAATAGCGAACAATCTGCCAATGCTTTT
GTTACCGCAACACAGGTTGCTCGGTTTGGGGTCGACAGGGATTTTACTAC
GAACAGGGTTGGTGGGTTTGCAAAAGGTCGCGAATACAAGAATGTAATCA
GGGGGAGTCAGATGTTGGGACCGAGGAGCGATGGCGGCGACAAGTTCGAG
GCAGACATAGCAGGAAATCGCGAGCGCTTAACTAGCAACAGAGCCTGTCG
GAGCCTGGATCCAAGACGGGAGAGATCCATGGCAGCGGTGGTGGCTGAGG
TGGACGCCGCACATGTTGTTGAGTTTTCCCGTGAGTCGTGCCCCATGTTC
TCTAGTGAGACGAATGCGTACAGCCGTTAGGAAGCAATCGATACAAGCGA
CCTATGGAATGTCGGAACGATACACACCTCTTCGGGGTCACTAGATTTCT
GGGACTTGGGGTCCTCGTCGAGCAACGAGCACACGCCGAATGCTGGGTAC
CATCGCTGGGCAGCTTTGACCACCCGCTTGCTCCCGTGTCAATAGCTGTG
GTGGCTAGTGCTGAGACAAGGCCTTCAAGCTCACCGTTGAAGATTTACTA
ATACACCAATCCCTTGAACCACGTTATGGTGCATCTGTAGTGCATCCATG
CATGGGCTAACTACGTTTAATGCTGTATGAGCTAGCCTCTAGCTTGGCGG
TATCAGGACTCTTTTTTATTGTTCCGTTGCCGTCTGCCGACCCGTACCCA
ACGACAATCGCTATAGGCCCCGACATGGACATTCGGCTCGAGCTGCAGAC
TTCACCAGGGAAGAAGTTTGGGGTGCAGATTGTCAACGACGACGGCATAG
TGAGTGCTCACCACTGGTCAAAGCGGGTAAGAAATTGCGAACATTAGGCA
GCGTCGATATATTTCCCAACGTCAATCTTGCCGTGGATATATCGAAATTC
ATTTGGTTGTTTCATGTTCGCCAATATCTGCCGTTTGCGTTGAAGTCCCT
GGGTCCTTCACTTCACGTTGAATGGCGGTAGGCAAGACACTGTTGCTTTC
TCCGCTGTGGTTTCAATTTTTCCACAACGAAATACGAAGCATGTGACTCT
AGGCTCTTGTCATCCCTTGCCTTCCCTGGCGCTCCCCCTCAAACTATTAT
CTTGATGGATAGGCCACTGAACCCAAATCGATATCGAACCTTATTTTTTT
GCATATACGCCAAGATAATCACTTTGCATATTAGCATTCGCCGTTGTGCT
GAGGGGAACCCTCCAACACATCTTCCCGTTTAACGGAAGCTGTCTTTGCC
GTCTTCCCATTTTTGACAGCTGCGCTTGCCTCCGCCCTCCCCCCCCAACA
TACACGTTACCCACCCCCACGGTACAAAAGGCAGCTATATACGCATTCTG
GGCGTTACCGGGTGGACGTCCGAATCCCGCAGAGAAGGCGGGATTGTGTG
TTGGAGATGTGATTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig228:13753..15468-

>mRNA_H-paniculata_contig228.6080.1 ID=mRNA_H-paniculata_contig228.6080.1|Name=mRNA_H-paniculata_contig228.6080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at H-paniculata_contig228:13753..15468- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGATCTGCTGAACGTGGTGGCACCACTTGAATGTGGTTCCGAAGCAAT
TAACAAGGATGGGTCGGCCGAGTCTATGTCGCCGCCTCACCCACCACCGA
GGCTTATGAAACGCTACGGCTGGTCTTTAAACGACTGTACGATGTCTTCC
TGGATCCAGAAGAATAGTGCCAGCGCTAGTTCGAATAAGACAGAGTCGGC
GGCATTACCAGCTGAACTTTCAATAAGAATCAATATGGAAAGTAGTCCGG
GTGTTGTCGGCAGCAACGGCGAAAATAGCGAACAATCTGCCAATGCTTTT
GTTACCGCAACACAGGTTGCTCGGTTTGGGGTCGACAGGGATTTTACTAC
GAACAGGGTTGGTGGGTTTGCAAAAGGTCGCGAATACAAGAATGTAATCA
GGGGGAGTCAGATGTTGGGACCGAGGAGCGATGGCGGCGACAAGTTCGAG
GCAGACATAGCAGGAAATCGCGAGCGCTTAACTAGCAACAGAGCCTGTCG
GAGCCTGGATCCAAGACGGGAGAGATCCATGGCAGCGGTGGTGGCTGAGG
TGGACGCCGCACATGTTGTTGAGTTTTCCCATCGATCTGCTGAACGTGGT
GGCACCACTTGAATGTGGTTCCGAAGCAATTAACAAGGATGGGTCGGCCG
AGTCTATGTCGCCGCCTCACCCACCACCGAGGCTTATGAAACGCTACGGC
TGGTCTTTAAACGACTGTACGATGTCTTCCTGGATCCAGAAGAATAGTGC
CAGCGCTAGTTCGAATAAGACAGAGTCGGCGGCATTACCAGCTGAACTTT
CAATAAGAATCAATATGGAAAGTAGTCCGGGTGTTGTCGGCAGCAACGGC
GAAAATAGCGAACAATCTGCCAATGCTTTTGTTACCGCAACACAGGTTGC
TCGGTTTGGGGTCGACAGGGATTTTACTACGAACAGGGTTGGTGGGTTTG
CAAAAGGTCGCGAATACAAGAATGTAATCAGGGGGAGTCAGATGTTGGGA
CCGAGGAGCGATGGCGGCGACAAGTTCGAGGCAGACATAGCAGGAAATCG
CGAGCGCTTAACTAGCAACAGAGCCTGTCGGAGCCTGGATCCAAGACGGG
AGAGATCCATGGCAGCGGTGGTGGCTGAGGTGGACGCCGCACATGTTGTT
GAGTTTTCCCGCCCCGACATGGACATTCGGCTCGAGCTGCAGACTTCACC
AGGGAAGAAGTTTGGGGTGCAGATTGTCAACGACGACGGCATAGTGAGTG
CTCACCACTGGTCAAAGCGGGCCCCGACATGGACATTCGGCTCGAGCTGC
AGACTTCACCAGGGAAGAAGTTTGGGGTGCAGATTGTCAACGACGACGGC
ATAGTGAGTGCTCACCACTGGTCAAAGCGGGCAGCTATATACGCATTCTG
GGCGTTACCGGGTGGACGTCCGAATCCCGCAGAGAAGGCGGGATTGTGTG
TTGGAGATGTGATTGCAGCTATATACGCATTCTGGGCGTTACCGGGTGGA
CGTCCGAATCCCGCAGAGAAGGCGGGATTGTGTGTTGGAGATGTGATT
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