mRNA_H-paniculata_contig22796.6076.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22796.6076.1 vs. uniprot
Match: A0A6H5L269_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L269_9PHAE) HSP 1 Score: 256 bits (653), Expect = 8.420e-74 Identity = 136/287 (47.39%), Postives = 185/287 (64.46%), Query Frame = 2
Query: 35 PHVVSPDLKKINALLKMPMPSNRGELRSLLGSILYLRKFLPDLSKELRELNHVFCHDVPFIFSDRHARIAKIILNYLANPTVLVFPGHNAAVDGTPPFQLTTNACKHGLGSVLEPLQPDNTLRPLLYISRTIDNNDKNWNTTDLECAALLWTIKKLRVFLYGIKLDVFTDYQSLLSYISMLEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVSATDDDENVCRILDSHEVTVCFIGRSGITLTSLRSGSGMQPLQQPLPTRIYIPFLLRPWVMYCVNKE 895
P + PD KK +A+ KM MP + ELRS+LGS+ YLRKFLP+L++ + +L + DV F F+ H ++ K +L LA+ VL FP ++AA+DGT F+LTT+A G G+VLE Q D T+RPL+YISR+ N+ NW+ + LEC AL+W I+KLRV+LYGI + FTD+Q LLS+ISM EKKP+VQRMCD LS + F L Y+ GK NQ+ADALSRLP T D + C++++ ++ V F+G L S S + P R LRP V C +E
Sbjct: 279 PFGLHPDPKKTDAMAKMKMPKTKSELRSMLGSVSYLRKFLPNLARNITDLTALLKKDVHFKFTAHHEQLTKAVLAQLASYEVLAFPDYDAAIDGTRKFRLTTDASISGFGAVLEQPQEDGTVRPLVYISRSTLPNEANWDVSSLECGALVWAIRKLRVYLYGIPFEAFTDHQPLLSFISMGEKKPRVQRMCDFLSAYSFTLSYRKGKENQVADALSRLPQPPTAADFDKCKLIEDGDLEVYFLGSRRRATRKLGSDSNAF-ISDPTENRF-----LRP-VTLCTTEE 558
BLAST of mRNA_H-paniculata_contig22796.6076.1 vs. uniprot
Match: A0A6H5KJH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH5_9PHAE) HSP 1 Score: 247 bits (630), Expect = 1.060e-70 Identity = 125/257 (48.64%), Postives = 171/257 (66.54%), Query Frame = 2
Query: 35 PHVVSPDLKKINALLKMPMPSNRGELRSLLGSILYLRKFLPDLSKELRELNHVFCHDVPFIFSDRHARIAKIILNYLANPTVLVFPGHNAAVDGTPPFQLTTNACKHGLGSVLEPLQPDNTLRPLLYISRTIDNNDKNWNTTDLECAALLWTIKKLRVFLYGIKLDVFTDYQSLLSYISMLEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVSATDDDENVCRILDSHEVTVCFIGRSGITLTSLRSGS 805
P + PD KK +A+ KM MP + ELRS+LGS+ YLRKF P+L++ + +L + F F+ H ++ K +L L + VL FP + AA+DGT F+LTT+A G G+VLE + D T+RPL+YISR+ N+ NW+ + LEC AL+W I+KLRV+LYGI + FTD+Q LLS+ISM EKKP+VQ MCD L+ + F L Y+ GK NQ+ADALSRLP T DD + C+ ++ ++ VCFIG S L S S
Sbjct: 130 PFGLHPDPKKTDAMAKMKMPKTKSELRSMLGSVSYLRKFRPNLARNITDLTALLQKAAHFKFTAHHEQLTKAVLAQLTSYEVLAFPDYAAAIDGTRKFRLTTDASISGSGAVLEQPRDDGTVRPLVYISRSTLPNEANWDVSSLECGALVWAIRKLRVYLYGIPFEAFTDHQPLLSFISMGEKKPRVQHMCDFLTAYSFTLSYRKGKDNQVADALSRLPQPPTADDFDKCKSIEDGDLEVCFIGSSRRATRKLGSDS 386
BLAST of mRNA_H-paniculata_contig22796.6076.1 vs. uniprot
Match: A0A6H5KFR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR4_9PHAE) HSP 1 Score: 220 bits (561), Expect = 3.900e-65 Identity = 125/326 (38.34%), Postives = 183/326 (56.13%), Query Frame = 2
Query: 89 MPSNRGELRSLLGSILYLRKFLPDLSKELRELNHVFCHDVPFIFSDRHARIAKIILNYLANPTVLVFPGHNAAVDGTPPFQLTTNACKHGLGSVLEPLQPDNTLRPLLYISRTIDNNDKNWNTTDLECAALLWTIKKLRVFLYGIKLDVFTDYQSLLSYISMLEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVSATDDDENVCRILD--SHEVTVCFI---------GRSGITLTSL--RSGSGMQPLQQPLPTRIYIPFLLRPWVMY-CVNKEGFHLGVHATLASLERYYWWIEMSASVKWRVRNYSICQAAKTSR 1024
MP + +LRSL+G + RKFLP+++K +R L + FIF+ + +++L LANP VLV+P + DG+ PF L +A + G G LE QPD ++RP ++ISR N++ +W DLE +++W IK+LR +L+G K + TD++SL + + E +VQR + L+ + + L Y+ G N AD L+RLPV+A + + + L E V FI R+ T +S+ R G L P RIY+P L+RPW+M C HLG TL+ LER+YWWI MS KW VR+ CQA K+SR
Sbjct: 1 MPRDVNQLRSLVGGLSSYRKFLPNMAKRIRPLTTLLTKQEKFIFTPSMEQAVRVLLAELANPPVLVYPDWDVVSDGSRPFHLYCDASRDGFGGTLEQEQPDGSIRPCVFISRATLNSECHWTPLDLEAGSIVWCIKRLRGYLWGTKFRICTDHKSLKHFAKVGENNARVQRWLEFLTAYNYTLEYRKGSANGNADFLARLPVAAAECNRSGRSRLTPAEDEEAVFFIRSCGRTPSGDRAAATPSSMTTRPGGRAARLLNDEPIRIYVPILMRPWMMQVCHADASCHLGAARTLSMLERFYWWIGMSVCTKWWVRHCLRCQARKSSR 326
BLAST of mRNA_H-paniculata_contig22796.6076.1 vs. uniprot
Match: A0A6H5K8H1_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8H1_9PHAE) HSP 1 Score: 208 bits (530), Expect = 1.060e-59 Identity = 104/211 (49.29%), Postives = 143/211 (67.77%), Query Frame = 2
Query: 35 PHVVSPDLKKINALLKMPMPSNRGELRSLLGSILYLRKFLPDLSKELRELNHVFCHDVPFIFSDRHARIAKIILNYLANPTVLVFPGHNAAVDGTPPFQLTTNACKHGLGSVLEPLQPDNTLRPLLYISRTIDNNDKNWNTTDLECAALLWTIKKLRVFLYGIKLDVFTDYQSLLSYISMLEKKPKVQRMCDILSQFQFNLRYKPGKRNQL 667
P V PD KK +A+ KM MP + ELRS+LGS+ YLRKFLP+L++ + +L + D F F+ H ++ K +L LA+ VL FP + AA+DGT F+LTT+A G G+VLE Q D T+ PL+Y+SR+ N+ NW+ + LEC AL+W I+KLR LYGI + FTD++ LLS+ SM EKKP+VQRM D LS + F L Y+ GK N++
Sbjct: 251 PFSVRPDPKKTDAMAKMKMPKTKSELRSMLGSVSYLRKFLPNLARNITDLTALLEKDAHFKFTAHHEQLTKAVLAQLASYEVLAFPDYAAAIDGTRKFRLTTDASISGFGAVLEQPQEDGTVSPLVYVSRSTLPNEANWDVSSLECGALVWAIRKLRDCLYGIPFEAFTDHKPLLSFFSMGEKKPRVQRMGDFLSAYSFTLSYRKGKDNRM 461
BLAST of mRNA_H-paniculata_contig22796.6076.1 vs. uniprot
Match: A0A6H5KAD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD8_9PHAE) HSP 1 Score: 207 bits (526), Expect = 2.080e-57 Identity = 118/342 (34.50%), Postives = 176/342 (51.46%), Query Frame = 2
Query: 137 YLRKFLPDLSKELRELNHVFCHDVPFIFSDRHARIAKIILNYLANPTVLVFPGHNAAVDGTPPFQLTTNACKHGLGSVLEPLQPDNTLRPLLYISRTIDNNDKNWNTTDLECAALLWTIKKLRVFLYGIKLDVFTDYQSLLSYISMLEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVSATDDDENVCRIL--DSHEVTVCFIGRSGIT-------------------------------------------LTSLRSGSGMQPLQQPLPTRIYIPFLLRPWVMY-CVNKEGFHLGVHATLASLERYYWWIEMSASVKWRVRNYSICQAAKTSR 1024
Y RKFLP+++ +R L + F+F+ + ++ L+ LANP VLV+P +A DG+ PF+L +A + G G LE QPD ++RP+++ISR +++++W DLE +++W+IK+LR +L+G K +FTD++SL + + +VQR + L+ + + L Y+ G N AD LSRLP+ A + D + L D E V FI G+T T+ R G L P RIY+P L+RPW+M C HLG TL+ LER+YWW+ MS KW VR+ CQA K+SR
Sbjct: 44 YYRKFLPNMATRIRPLTTLLKKQATFVFAPAMVQAVRVPLSELANPPVLVYPDLDAVSDGSRPFRLYCDASRDGFGGTLEQEQPDGSIRPIVFISRATLDSERHWTPLDLEAGSIVWSIKRLRGYLWGTKFRIFTDHKSLEHFAKVGGNNARVQRWLEFLTAYNYTLEYRKGSANGNADFLSRLPIDAAECDRSGRSRLTPDDDEEGVFFIRSCGLTPSGHRAVGVGLGGLVPTSPTSVLGGLAPSTDDFIDFRRHAPPSSTTARPGGRAARLLNDEPIRIYVPMLMRPWIMQACHADASCHLGAARTLSMLERFYWWVGMSVCTKWWVRHCLRCQARKSSR 385
BLAST of mRNA_H-paniculata_contig22796.6076.1 vs. uniprot
Match: A0A6H5JJN6_9PHAE (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJN6_9PHAE) HSP 1 Score: 201 bits (511), Expect = 3.060e-57 Identity = 100/246 (40.65%), Postives = 156/246 (63.41%), Query Frame = 2
Query: 44 VSPDLKKINALLKMPMPSNRGELRSLLGSILYLRKFLPDLSKELRELNHVFCHDVPFIFSDRHARIAKIILNYLANPTVLVFPGHNAAVDGTPPFQLTTNACKHGLGSVLEPLQPDNTLRPLLYISRTIDNNDKNWNTTDLECAALLWTIKKLRVFLYGIKLDVFTDYQSLLSYISMLEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVSATDDDENV-CRILDSHEVTVCFIGRSGI 778
+ PD +K+ L ++PMP+N +LRSLLGS+ Y RKFL ++S +L+ +N + F F+ H + + +++ L+ PTVL FP + A+ G PF+LT +A GLG+V+E Q D ++RPL ++SR+ N+ W+ T+LE A++W IKK R YGI +V++D+Q L + S+ EK +VQR D LS + + L+Y+PG+ N AD +SRLP+ AT +DE R+ D ++ V I SG+
Sbjct: 32 IGPDPEKVRPLREVPMPTNVSQLRSLLGSLSYYRKFLKNMSAKLKPINAMLKKGEKFAFTADHVAVVRKMMDILSGPTVLAFPCYEGAISGERPFRLTADASISGLGAVIEQEQRDGSIRPLCFLSRSTFPNETRWSPTELEAGAIVWAIKKNRTLFYGIPFEVYSDHQPLRNLGSLAEKNNRVQRWYDFLSAYTYELKYRPGRENANADLMSRLPLPATKEDEAPDVRLTDPSDLDVYMINASGV 277
BLAST of mRNA_H-paniculata_contig22796.6076.1 vs. uniprot
Match: A0A6H5KAM4_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM4_9PHAE) HSP 1 Score: 203 bits (517), Expect = 5.790e-57 Identity = 101/246 (41.06%), Postives = 157/246 (63.82%), Query Frame = 2
Query: 44 VSPDLKKINALLKMPMPSNRGELRSLLGSILYLRKFLPDLSKELRELNHVFCHDVPFIFSDRHARIAKIILNYLANPTVLVFPGHNAAVDGTPPFQLTTNACKHGLGSVLEPLQPDNTLRPLLYISRTIDNNDKNWNTTDLECAALLWTIKKLRVFLYGIKLDVFTDYQSLLSYISMLEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVSATDDDENV-CRILDSHEVTVCFIGRSGI 778
+ PD +K+ L ++PMP+N +LRSLLGS+ Y RKFL ++S +L+ +N + F F+ H + + +++ L+ PTVL FP + A+ G PF+LT +A GLG+V+E Q D ++RPL ++SR+ N+ W+ T+LE A++W IKK R YGI +V++D+Q L + S+ EK +VQR D LS + + L+Y+PG+ N AD +SRLP+ AT +DE R+ D ++ V IG SG+
Sbjct: 32 IGPDPEKVRPLREVPMPTNVSQLRSLLGSLSYYRKFLKNMSAKLKPINAMLKKGEKFAFTADHVAVVRKMMDILSGPTVLAFPCYEGAISGERPFRLTADASISGLGAVIEQEQRDGSIRPLCFLSRSTFPNETRWSPTELEAGAIVWAIKKNRTLFYGIPFEVYSDHQPLRNLGSLAEKNNRVQRWYDFLSAYTYELKYRPGRENANADLMSRLPLPATKEDEAPDVRLTDPSDLDVYMIGASGV 277
BLAST of mRNA_H-paniculata_contig22796.6076.1 vs. uniprot
Match: A0A6H5KRW3_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW3_9PHAE) HSP 1 Score: 201 bits (511), Expect = 4.000e-55 Identity = 100/246 (40.65%), Postives = 154/246 (62.60%), Query Frame = 2
Query: 44 VSPDLKKINALLKMPMPSNRGELRSLLGSILYLRKFLPDLSKELRELNHVFCHDVPFIFSDRHARIAKIILNYLANPTVLVFPGHNAAVDGTPPFQLTTNACKHGLGSVLEPLQPDNTLRPLLYISRTIDNNDKNWNTTDLECAALLWTIKKLRVFLYGIKLDVFTDYQSLLSYISMLEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVSATDDDENV-CRILDSHEVTVCFIGRSGI 778
+ P KK+ +L+MPMP+N +LRS+LGS+ Y RKFL +S +L + + D F F+ +HA + + + + L++P VL FP + A+ G F+L T+A GLG+V+E Q D T+RPL Y+SR+ N++ W+ T+LEC A++W IKK R YGI +++D+Q L + S+ EK +VQR D LS + + L Y+PGK N AD +SRLP+ ++D + R+ D ++ V IG SG+
Sbjct: 187 IEPCPKKVKPMLQMPMPTNVSQLRSILGSLSYYRKFLKGMSAKLHSVTALLKKDAKFAFTAKHAEVIQEMKDKLSSPEVLAFPDYEGAITGKRKFRLITDASISGLGAVIEQEQEDGTVRPLCYLSRSTYPNERRWSATELECGAIVWAIKKNRTLFYGIPFQIYSDHQPLRNLESLAEKNNRVQRWFDFLSAYTYELIYRPGKANGNADCMSRLPLPPMEEDASPEMRLTDPSDLDVYMIGASGV 432
BLAST of mRNA_H-paniculata_contig22796.6076.1 vs. uniprot
Match: A0A6H5JWR4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR4_9PHAE) HSP 1 Score: 199 bits (507), Expect = 1.530e-53 Identity = 100/246 (40.65%), Postives = 155/246 (63.01%), Query Frame = 2
Query: 44 VSPDLKKINALLKMPMPSNRGELRSLLGSILYLRKFLPDLSKELRELNHVFCHDVPFIFSDRHARIAKIILNYLANPTVLVFPGHNAAVDGTPPFQLTTNACKHGLGSVLEPLQPDNTLRPLLYISRTIDNNDKNWNTTDLECAALLWTIKKLRVFLYGIKLDVFTDYQSLLSYISMLEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVSATDDDENV-CRILDSHEVTVCFIGRSGI 778
+ PD K+ L ++PMP+N +LRSLLGS+ Y RKFL ++S +L+ +N + F F+ H + + +++ L+ PTVL FP + A+ G PF+LT +A GLG+V+E Q D ++RPL ++SR+ N+ W+ T LE A++W IK+ R YGI +V++D+Q L + S+ EK +VQR D LS + + L+Y+PG+ N AD +SRLP+ AT +DE R+ D ++ V IG SG+
Sbjct: 32 IGPDPGKVRPLREVPMPTNVSQLRSLLGSLSYYRKFLKNMSAKLKPINAMLKKGEKFAFTADHVAVVRKMMDILSGPTVLAFPCYEGAISGERPFRLTADASISGLGAVIEQEQRDGSIRPLCFLSRSTFPNETRWSPTKLEAGAIVWAIKQNRTLFYGIPFEVYSDHQPLRNLGSLAEKNNRVQRWYDFLSAYTYELKYRPGRENANADLMSRLPLPATKEDEAPDVRLTDPSDLDVYMIGASGV 277
BLAST of mRNA_H-paniculata_contig22796.6076.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE) HSP 1 Score: 192 bits (487), Expect = 8.860e-51 Identity = 105/273 (38.46%), Postives = 163/273 (59.71%), Query Frame = 2
Query: 35 PHVVSPDLKKINALLKMPMPSNRGELRSLLGSILYLRKFLPDLSKELRELNHVFCHDVPFIFSDRHARIAKIILNYLANPTVLVFPGHNAAVDGTPPFQLTTNACKHGLGSVLEPLQPDNTLRPLLYISRTIDNNDKNWNTTDLECAALLWTIKKLRVFLYGIKLDVFTDYQSLLSYISMLEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVSATDDDENVCRIL--DSHEVTVCFIGRSGITLTSLRS-GSGMQPLQQPLPTRI 844
P V P+ K+ AL KMPMP + +LRSLLG + Y RKFLP+++ +R L + F+F+ + +I+L+ LANP VLV+P +A DG+ PF+L +A + G G LE QPD ++RP+++ISR +++++W DLE +++W+IK+LR +L+G K +FTD++SL + + E +VQR + L+ + + L Y+ G N AD LSRLP+ A + D + L D E V FI G+T + R+ G G+ L PT +
Sbjct: 475 PDGVRPNGAKVAALTKMPMPRDVKQLRSLLGGLSYYRKFLPNMATRIRPLTTLLKKQATFVFTLAMEQAVRILLSELANPPVLVYPDWDAVSDGSRPFRLYCDASRDGFGGTLEQEQPDGSIRPIVFISRATLDSERHWTPLDLEAGSIVWSIKRLRGYLWGTKFRIFTDHKSLEHFAKVGENNARVQRWLEFLTAYNYTLEYRKGSANGNADFLSRLPIDAAECDRSGRSRLTPDGDEEGVSFIRSCGLTPSVHRAVGVGLGGLVPTSPTSV 747 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22796.6076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22796.6076.1 >prot_H-paniculata_contig22796.6076.1 ID=prot_H-paniculata_contig22796.6076.1|Name=mRNA_H-paniculata_contig22796.6076.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=322bp MPMPSNRGELRSLLGSILYLRKFLPDLSKELRELNHVFCHDVPFIFSDRHback to top mRNA from alignment at H-paniculata_contig22796:2468..4112- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22796.6076.1 ID=mRNA_H-paniculata_contig22796.6076.1|Name=mRNA_H-paniculata_contig22796.6076.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1645bp|location=Sequence derived from alignment at H-paniculata_contig22796:2468..4112- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22796:2468..4112- >mRNA_H-paniculata_contig22796.6076.1 ID=mRNA_H-paniculata_contig22796.6076.1|Name=mRNA_H-paniculata_contig22796.6076.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1932bp|location=Sequence derived from alignment at H-paniculata_contig22796:2468..4112- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |