mRNA_H-paniculata_contig22795.6075.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22795.6075.1
Unique NamemRNA_H-paniculata_contig22795.6075.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22795.6075.1 vs. uniprot
Match: D7FZC7_ECTSI (MinC_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC7_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 8.800e-13
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    4 SQIFSTRFDAELVGVADTFTTCHDPESLPGLVVEAPTSVSLSEGKLIFRSFDIPA 168
            ++IF+TRFDAELVGV +TFTT   PESL GLVV+ PT+V L E KL+F SFD+ A
Sbjct:  255 AKIFATRFDAELVGVGETFTTLDSPESLAGLVVDTPTNVCLRENKLVFHSFDLSA 309
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BLAST of mRNA_H-paniculata_contig22795.6075.1 vs. uniprot
Match: A0A6H5JAT5_9PHAE (MinC_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT5_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.440e-11
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    4 SQIFSTRFDAELVGVADTFTTCHDPESLPGLVVEAPTSVSLSEGKLIFRSFDIPA 168
            ++IF+TRFDAELVGV ++FTT   PE+L GLVV+APT+V L E +L+F SFD+ A
Sbjct:  395 AKIFATRFDAELVGVGESFTTLDSPENLAGLVVDAPTNVCLRENELVFHSFDLSA 449
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22795.6075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZC7_ECTSI8.800e-1365.45MinC_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JAT5_9PHAE1.440e-1161.82MinC_C domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22795contigH-paniculata_contig22795:625..2508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue2.6e-12
Seed eggNOG ortholog2880.D7FZC7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Septum formation inhibitor MinC, C-terminal domain
EggNOG OGs2RYK0@2759,COG0850@1
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size636
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22795.6075.1prot_H-paniculata_contig22795.6075.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22795 625..2061 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.347792-CDS-H-paniculata_contig22795:624..7201622929634.347792-CDS-H-paniculata_contig22795:624..720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22795 625..720 +
1691480944.7958412-CDS-H-paniculata_contig22795:624..7201691480944.7958412-CDS-H-paniculata_contig22795:624..720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22795 625..720 +
1622929634.3578942-CDS-H-paniculata_contig22795:1968..20611622929634.3578942-CDS-H-paniculata_contig22795:1968..2061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22795 1969..2061 +
1691480944.8114274-CDS-H-paniculata_contig22795:1968..20611691480944.8114274-CDS-H-paniculata_contig22795:1968..2061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22795 1969..2061 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.3678353-UTR-H-paniculata_contig22795:2061..25081622929634.3678353-UTR-H-paniculata_contig22795:2061..2508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22795 2062..2508 +
1691480944.8262222-UTR-H-paniculata_contig22795:2061..25081691480944.8262222-UTR-H-paniculata_contig22795:2061..2508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22795 2062..2508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22795.6075.1

>prot_H-paniculata_contig22795.6075.1 ID=prot_H-paniculata_contig22795.6075.1|Name=mRNA_H-paniculata_contig22795.6075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MSQIFSTRFDAELVGVADTFTTCHDPESLPGLVVEAPTSVSLSEGKLIFR
SFDIPAPSATNQ*
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mRNA from alignment at H-paniculata_contig22795:625..2508+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22795.6075.1 ID=mRNA_H-paniculata_contig22795.6075.1|Name=mRNA_H-paniculata_contig22795.6075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1884bp|location=Sequence derived from alignment at H-paniculata_contig22795:625..2508+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGCAGATATTTTCTACGAGATTTGACGCCGAACTGGTGGGCGTAGC
GGATACGTTTACGACGTGTCATGATCCAGAGAGTTTGCCTGGCCTGGTGA
GAAACGATGGGTGATCTTTTGTTAACGGTCGGGTGTCAGGTTCTTTGTAT
CTTTACCTGAGACTTCGTTAATCTTGTAGGGAATTGTTGGTATTTTTTTC
TGGGTATATCTTTCGGGAAATGCGGGAGACTGTGGATTTTTCAACATAGA
AGGGAGTTACAATTACGGCTTCGTGAACCTCGGGGGAAAAAAAAATCAAG
ATCTGTCAGTCCTGCGGGGAGAGAGGGGTGACAATTTATGGTTCTCTGGT
GTTTGAGCTAATTTTTTGGGTGATACTTGTTTGGGCTGATGGCTCTATCA
GAGTTGTGTGTTCTGTCATATATCGTACATGGGTGCTTTCCTCTTCTCTT
TTTTTCGCAGGTACGTCAGTCAACCGTAACCGCAACCACGCGTGTAGTGA
CCTTGACGTTAAGCTAATCCTCGAAAATCTATCTCCCTTCGTGAACTTTC
GGGTATTTCTTCTGTTGTTTTCTCTTTTGCACTCCTTATCACGACTGTAG
CGACCCTGGGAAACTTGTAGCTAGTTCAGGTGTTTGTATAAACATTTGAG
TCATACTCCGGCGATCCGTAACGAGTGAGACTTGCTGATTTCTCCCCCGA
CAGTAAGACTCAGAATCAAATGAAGCTCAAACCGTGAGTCGGGATTTCGC
AGGTTGGCGAAGAAAGACATTCGCGATTTCCAAAATTTGTTTTAGACGAA
AGATCGATACTCCTGCTCGTGAAGGATCATCGCAGCAGAAGATTTTGCTT
CTTGGAGTTGACATACTCTCTCCAGCCGTCACCAACAACCACCATGCGTA
CGTGTCACCTCTATCTTCCTGATGACTCGAGAAATTCAGAAATCCCTCGG
TCCTCACCGATAGCATCTTCGGACGCAAGCTCTACCGTAGCAGCCCTCTC
TAAAGAGACCCCACCCCCTCAGGATAAATTCAGACTGACTATGTTTGTGG
TAATCCGAAGAACAATTTCCTGGAATATGACGCTCAACTGGTGGACCGAA
AATATGAGAGACGTGCGTTTCGGTTGGGGCTATTTTCATGTTTCCCGCGA
TTTTGGCAGATTTTGGTAGATATCTTCGTCTTGTCTTGGTGCGTTTCTTG
TCTGTGATTTTTTTGGTGTGCGATGTTTTCATCCAATTCGGTATCATGAT
GCTTTTTCACGTGTGCTCACATTATTTTCGGGGTATTCCACGTGTTTAAA
GAATGTCTTTTCGCGGTGTTATTTCTTGCGTTTCTTGCATACAGGTGGTC
GAGGCGCCTACAAGCGTTTCCCTGAGCGAGGGAAAGCTGATCTTTCGTTC
CTTCGACATTCCTGCGCCGTCAGCCACCAACCAATAGATATATCGTCGTG
AACGCTGTAGTCATGGCACCAACGCAATTCTACGCTAATGCGCTATGTGA
CTGCTCGTGAATTTCTCAGTAAGCATTTGCGTACATGTGCACTCGACTGC
CCGTCACCTCTTAACGGCTTGTTCGGTTACGTCTGGTGAAGTAGCAGTTG
AGATGTTTGTTTTTTGGCGTACGTTAAACAGATGGCGATTGGTCCTGATT
GCAGGATTGGCGATGGCAACCAAGAAAAGACGAGATAGTAGTTGACCCCT
ATAACCGAAAGGCATTTCTCGCTTTGTAGGTGTGGGGGACGTGCGTCAGA
CACGCCCTAGGGTTGGACTAGGATAGTTTACACACTGTACAGGCCAGTTG
AAGACAAGGAGGCGTGAGGAGGTACGCCCTCTCCAGTTGTGGAAAATGAC
AATAACCGAGGTTGTATTTGGACCAAAACCCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig22795:625..2508+

>mRNA_H-paniculata_contig22795.6075.1 ID=mRNA_H-paniculata_contig22795.6075.1|Name=mRNA_H-paniculata_contig22795.6075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig22795:625..2508+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGCAGATATTTTCTACGAGATTTGACGCCGAACTGGTGGGCGTAGC
GGATACGTTTACGACGTGTCATGATCCAGAGAGTTTGCCTGGCCTGATGT
CGCAGATATTTTCTACGAGATTTGACGCCGAACTGGTGGGCGTAGCGGAT
ACGTTTACGACGTGTCATGATCCAGAGAGTTTGCCTGGCCTGGTGGTCGA
GGCGCCTACAAGCGTTTCCCTGAGCGAGGGAAAGCTGATCTTTCGTTCCT
TCGACATTCCTGCGCCGTCAGCCACCAACCAATAGGTGGTCGAGGCGCCT
ACAAGCGTTTCCCTGAGCGAGGGAAAGCTGATCTTTCGTTCCTTCGACAT
TCCTGCGCCGTCAGCCACCAACCAATAG
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