mRNA_H-paniculata_contig22791.6074.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22791.6074.1
Unique NamemRNA_H-paniculata_contig22791.6074.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22791.6074.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.100e-27
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:    1 LLKSKGDTLSAFQSFVQSVVIPSGFCIERLRTDKGGEYIEKGFKDYCLQTWMSLEYASTNTPQQIGMSERVGRILPAMVRCMLADSGLPKFLWSTVPE 294
            L+K+K D + A Q F QS+V+P+ F ++ LR DKG E   + F++YCLQ    LEYASTNTPQQ+G +ER GR L AMVRC+L DSGLP+FLW  + +
Sbjct:   30 LMKTKRDAIKALQLFNQSLVVPTRFRLDCLRGDKGTECTCREFREYCLQIGAKLEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFLWGQLMQ 127
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BLAST of mRNA_H-paniculata_contig22791.6074.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 9.410e-25
Identity = 51/94 (54.26%), Postives = 62/94 (65.96%), Query Frame = 1 
Query:    1 LLKSKGDTLSAFQSFVQSVVIPSGFCIERLRTDKGGEYIEKGFKDYCLQTWMSLEYASTNTPQQIGMSERVGRILPAMVRCMLADSGLPKFLWS 282
            L+K K  T+ A Q F QSV+ P    +E +R DKGGEY    F  YC    + L +ASTNTPQ+IG +ER+GR L  MVRC+LADSGLP FLW 
Sbjct:  363 LMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHFLWE 456
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BLAST of mRNA_H-paniculata_contig22791.6074.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 8.370e-22
Identity = 45/68 (66.18%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:   79 IERLRTDKGGEYIEKGFKDYCLQTWMSLEYASTNTPQQIGMSERVGRILPAMVRCMLADSGLPKFLWS 282
            ++RLR DK  EY    F++YCLQ  + LEYASTNTPQQIG +ER GR L AMVRC+L DSGLPKFLW 
Sbjct:  329 LDRLRGDKEAEYTCLEFREYCLQIGVKLEYASTNTPQQIGANERAGRTLAAMVRCLLTDSGLPKFLWG 396
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BLAST of mRNA_H-paniculata_contig22791.6074.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.250e-21
Identity = 41/94 (43.62%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:    1 LLKSKGDTLSAFQSFVQSVVIPSGFCIERLRTDKGGEYIEKGFKDYCLQTWMSLEYASTNTPQQIGMSERVGRILPAMVRCMLADSGLPKFLWS 282
            L++SK + ++    F+Q +VIP+GF +ERLR+D GGEY  + ++D+C    +  E+ +  TPQQ G+SER GR L  +VRC++    LP+FLW 
Sbjct:   83 LIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEYTSEYYRDFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLMHGGKLPEFLWG 176
[Close]
BLAST of mRNA_H-paniculata_contig22791.6074.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 8.620e-21
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:    4 LKSKGDTLSAFQSFVQSVVIPSGFCIERLRTDKGGEYIEKGFKDYCLQTWMSLEYASTNTPQQIGMSERVGRILPAMVRCMLADSGLPKFLWSTV 288
            +  KGD LS+  ++VQ V IP G  ++ L +D GGEY+   F+DYC  T +   ++S +TPQQ G+SER GR +  M RC++ ++ LPK LW  +
Sbjct:  336 IAKKGDALSSLVNYVQDVAIPLGLRVQYLHSDNGGEYVNSDFRDYCRTTGIIQRFSSPHTPQQNGISERDGRTIMNMARCIINETNLPKHLWGEI 430
[Close]
BLAST of mRNA_H-paniculata_contig22791.6074.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.890e-20
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 LLKSKGDTLSAFQSFVQSVVIPSGFCIERLRTDKGGEYIEKGFKDYCLQTWMSLEYASTNTPQQIGMSERVGRILPAMVRCMLADSGLPKFLWS 282
            LL+ K DT  A  ++   V    G+ IE +R DKGGE     F+DYC  + + LEYA+TNTPQQIG+SER G+ L  + RC+L D   P  +W 
Sbjct:  466 LLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWG 559
[Close]
BLAST of mRNA_H-paniculata_contig22791.6074.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.940e-20
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 LLKSKGDTLSAFQSFVQSVVIPSGFCIERLRTDKGGEYIEKGFKDYCLQTWMSLEYASTNTPQQIGMSERVGRILPAMVRCMLADSGLPKFLWS 282
            LL+ K DT  A  ++   V    G+ IE +R DKGGE     F+DYC  + + LEYA+TNTPQQIG+SER G+ L  + RC+L D   P  +W 
Sbjct:  142 LLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWG 235
[Close]
BLAST of mRNA_H-paniculata_contig22791.6074.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.970e-20
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 LLKSKGDTLSAFQSFVQSVVIPSGFCIERLRTDKGGEYIEKGFKDYCLQTWMSLEYASTNTPQQIGMSERVGRILPAMVRCMLADSGLPKFLWS 282
            LL+ K DT  A  ++   V    G+ IE +R DKGGE     F+DYC  + + LEYA+TNTPQQIG+SER G+ L  + RC+L D   P  +W 
Sbjct:  338 LLRKKSDTTEAVHTYNMCVAAAGGYRIEAIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWG 431
[Close]
BLAST of mRNA_H-paniculata_contig22791.6074.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.990e-20
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 LLKSKGDTLSAFQSFVQSVVIPSGFCIERLRTDKGGEYIEKGFKDYCLQTWMSLEYASTNTPQQIGMSERVGRILPAMVRCMLADSGLPKFLWS 282
            LL+ K DT  A  ++   V    G+ IE +R DKGGE     F+DYC  + + LEYA+TNTPQQIG+SER G+ L  + RC+L D   P  +W 
Sbjct:  142 LLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWG 235
[Close]
BLAST of mRNA_H-paniculata_contig22791.6074.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.000e-20
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 LLKSKGDTLSAFQSFVQSVVIPSGFCIERLRTDKGGEYIEKGFKDYCLQTWMSLEYASTNTPQQIGMSERVGRILPAMVRCMLADSGLPKFLWS 282
            LL+ K DT  A  ++   V    G+ IE +R DKGGE     F+DYC  + + LEYA+TNTPQQIG+SER G+ L  + RC+L D   P  +W 
Sbjct:  142 LLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWG 235
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22791.6074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE1.100e-2755.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1J1_9PHAE9.410e-2554.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWF9_9PHAE8.370e-2266.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE3.250e-2143.62Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KAG6_9PHAE8.620e-2143.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVF6_9PHAE2.890e-2045.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE2.940e-2045.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSL6_9PHAE2.970e-2045.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE2.990e-2045.74Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE3.000e-2045.74Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22791contigH-paniculata_contig22791:3490..3792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue8e-11
Seed eggNOG ortholog164328.Phyra86815
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHNV@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.3047314-CDS-H-paniculata_contig22791:3489..37921622929634.3047314-CDS-H-paniculata_contig22791:3489..3792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22791 3490..3792 -
1691480944.7785947-CDS-H-paniculata_contig22791:3489..37921691480944.7785947-CDS-H-paniculata_contig22791:3489..3792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22791 3490..3792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22791.6074.1prot_H-paniculata_contig22791.6074.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22791 3490..3792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22791.6074.1

>prot_H-paniculata_contig22791.6074.1 ID=prot_H-paniculata_contig22791.6074.1|Name=mRNA_H-paniculata_contig22791.6074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
LLKSKGDTLSAFQSFVQSVVIPSGFCIERLRTDKGGEYIEKGFKDYCLQT
WMSLEYASTNTPQQIGMSERVGRILPAMVRCMLADSGLPKFLWSTVPEIR
*
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mRNA from alignment at H-paniculata_contig22791:3490..3792-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22791.6074.1 ID=mRNA_H-paniculata_contig22791.6074.1|Name=mRNA_H-paniculata_contig22791.6074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig22791:3490..3792- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTTGAAGTCCAAAGGCGACACTCTCAGCGCATTCCAGTCGTTCGTGCA
ATCGGTGGTGATTCCTAGCGGCTTCTGCATCGAGCGCCTGAGGACTGACA
AAGGAGGCGAATATATCGAGAAGGGTTTCAAAGACTACTGCCTTCAGACT
TGGATGTCACTCGAGTACGCCAGCACCAACACGCCACAACAAATCGGCAT
GTCCGAGCGCGTCGGAAGAATTCTTCCGGCTATGGTGAGGTGCATGCTTG
CCGACAGCGGACTGCCAAAGTTTCTGTGGTCAACAGTACCCGAAATTCGC
TGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22791:3490..3792-

>mRNA_H-paniculata_contig22791.6074.1 ID=mRNA_H-paniculata_contig22791.6074.1|Name=mRNA_H-paniculata_contig22791.6074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig22791:3490..3792- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTTGAAGTCCAAAGGCGACACTCTCAGCGCATTCCAGTCGTTCGTGCA
ATCGGTGGTGATTCCTAGCGGCTTCTGCATCGAGCGCCTGAGGACTGACA
AAGGAGGCGAATATATCGAGAAGGGTTTCAAAGACTACTGCCTTCAGACT
TGGATGTCACTCGAGTACGCCAGCACCAACACGCCACAACAAATCGGCAT
GTCCGAGCGCGTCGGAAGAATTCTTCCGGCTATGGTGAGGTGCATGCTTG
CCGACAGCGGACTGCCAAAGTTTCTGTGGTCAACAGTACCCGAAATTCGC
TGACTGTTGAAGTCCAAAGGCGACACTCTCAGCGCATTCCAGTCGTTCGT
GCAATCGGTGGTGATTCCTAGCGGCTTCTGCATCGAGCGCCTGAGGACTG
ACAAAGGAGGCGAATATATCGAGAAGGGTTTCAAAGACTACTGCCTTCAG
ACTTGGATGTCACTCGAGTACGCCAGCACCAACACGCCACAACAAATCGG
CATGTCCGAGCGCGTCGGAAGAATTCTTCCGGCTATGGTGAGGTGCATGC
TTGCCGACAGCGGACTGCCAAAGTTTCTGTGGTCAACAGTACCCGAAATT
CGCTGA
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