mRNA_H-paniculata_contig2278.6068.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2278.6068.1
Unique NamemRNA_H-paniculata_contig2278.6068.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2278.6068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2278contigH-paniculata_contig2278:8355..12484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2278.6068.1prot_H-paniculata_contig2278.6068.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2278 8374..12484 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929633.9305801-UTR-H-paniculata_contig2278:8354..83731622929633.9305801-UTR-H-paniculata_contig2278:8354..8373Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2278 8355..8373 +
1691480944.560012-UTR-H-paniculata_contig2278:8354..83731691480944.560012-UTR-H-paniculata_contig2278:8354..8373Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2278 8355..8373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929633.9464302-CDS-H-paniculata_contig2278:8373..85261622929633.9464302-CDS-H-paniculata_contig2278:8373..8526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2278 8374..8526 +
1691480944.5717463-CDS-H-paniculata_contig2278:8373..85261691480944.5717463-CDS-H-paniculata_contig2278:8373..8526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2278 8374..8526 +
1622929633.9601417-CDS-H-paniculata_contig2278:12457..124841622929633.9601417-CDS-H-paniculata_contig2278:12457..12484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2278 12458..12484 +
1691480944.5906596-CDS-H-paniculata_contig2278:12457..124841691480944.5906596-CDS-H-paniculata_contig2278:12457..12484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2278 12458..12484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2278.6068.1

>prot_H-paniculata_contig2278.6068.1 ID=prot_H-paniculata_contig2278.6068.1|Name=mRNA_H-paniculata_contig2278.6068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MELGDNSPVLDMLVYERNEWHNIHGPPHEFLAMNPHAVTVGNHEGEVYRH
EGLLVKLVEA
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mRNA from alignment at H-paniculata_contig2278:8355..12484+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2278.6068.1 ID=mRNA_H-paniculata_contig2278.6068.1|Name=mRNA_H-paniculata_contig2278.6068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4130bp|location=Sequence derived from alignment at H-paniculata_contig2278:8355..12484+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGAGAGGAAATTCGGCGAGATGGAGCTGGGAGACAACAGCCCAGTCCTCG
ATATGCTGGTCTATGAAAGAAACGAGTGGCACAACATTCATGGACCTCCG
CATGAGTTCCTGGCCATGAACCCCCACGCCGTAACCGTGGGGAATCACGA
AGGGGAAGTTTACCGTCACGAGGTATGGACCGCCGAGAAGCCAGATGAGG
GAGGATGGGACTATCTCAAAGCAACCTAGAAAGTCCTTGGATTTTCAAAT
CCTTTCACTGGTAGTATTTTGTGAAGTAGGAAGGCTACCGTTTAGTCGCA
GACAGCACTCTACGGGCATGAGTGCTACAGCACTGCAGCATCCCGCACGC
CGTCTTTCTTGAACAAGAAACGAGATTTGATGTGGCGTCCGAAGGGCTAT
GAAGCTGCACGGTTGCTCGGAACTTCTTGGTACTTCACTTGAGTTGCAAA
ACTAAAAGATCATGTCGATACTGATGGAAAGATGTAACCACACAACACGC
CTGAACTGTCATGTTTCCTCCACTTCCCCCCAAACTTAATGCACTGTATA
GACGCGGTACAATCGAAAACAGCGAACCCAAAATGATGCAAGTGACATCC
ACACACAGCACCCTTGCAGCGACCTAGTTGTCCAGTGAGATACATTTTTG
GTGTAGTTGAGGGGCGTAACCCCTGCGTGAAAGCTTAAGGTTTGTAAGTT
ATGACAAAAGTGTTCATGTACAGCAGACATGGGGCCAATTTTCGAGACGG
CCTGTGGAGCGAGTACGTCAGTGCAAATATTTTGCAATTGAAATGAAGGC
GCAGAGGGGGGAGCTGGCTCGCAGCACATGGCAGTGAGCACAATACTATG
ATTTCTGGACTGAGGCCGTGCTCATTAAACAGCTGCTTACCGTGGCTATG
AATCGTTCCAGGGCGATAATGCTTGCTTGCACTGCATGACGACGGCACGA
CGCGGCGCGGCGTGAGCGCCACAGATGGAATGAAGTGTTGTGCAACTTTT
TGTTGGTTTTGCAAGTGAAGTAGAGCAAATGATGCTGAAATTGTTCGTAC
TTGGGACGCGGATTGCGTGCGCTTCTCTTTCTACAAAAATCCAAAATTAT
GCACAAGTAAGTCGTCTTTCTCATGTCACGAACCATACGACGGCGAAGTC
TTTCCTGCTTTCGTCCACGATAGACAATACACGGTAGTCCGTGTAGAGTT
TGGTTTGGGCGAGATGGAAAAGGGCAGCAGTAGATCTAACTTTAATATTA
CCTGTTTTTCAAGTATCGAGGAGGATAAAACACATGTTCCCCGGATGCCA
CTGCGTGGTAATGAAATGAAGCATTACCTTAGATTTTGTGTATATTTTTC
TCGTCGTTTAATATGGGTTGCGGTTGCAACAGAGGTGGTTTAGTCAGTAT
GTTTATGCGATTCTATGGGATGTGCAAAATTTGTTGGCTCACGTGCATAA
CGGTGCATTTGCGGCTATTACTGGGGCATGGCATACAACATACAACACAA
CGTCCTGATGTTTGTCGTTGCCAAAGTGGCGTTTTTGATTGAAATGAGGG
GTCTTCTGCCTGTCCTTCTGTAGCATGGATAGAGACACGAAGTGTGCGTT
GAGGCGGCGAAGCTATGCAGAGACCAGTAGAGGTATATATATACATGTAG
ACCACTTGTTATGGAAGGACGCTTTTGTCGGGACAAAGAAATCTTGACCA
TGGCTTTTTTGTCGGGAAAACGAAACACCCAACAAAATTCCATATGCAAG
TTATGGCCGAGCCCGGAGAATAAACATCAGTCAGATATCGATAGCGGAGC
AGGGGAAGATATATATTTAAGTGCCATGCATGTTCGACCACGAGGAGGTG
TCCACGTACGCCGACTTTTCTTTACTCGTGTTGCGGATCAGCCTTGACCT
TATGGATTATCATGATTGTAACAATCGTCATCCATGATAACGACGGCAGC
ATGGGACAGCCTTGCAGCAGCAGTGGAAGGTCGCGATAGCCGCCCAGCGA
TGGGGGCTCTAACTTCTCCTGCAAGGCTGAAGTCCGGCAGCTATCGCGTC
GGTATGGTGTGTCTAGCTTGGCTGTGTCAACATCGGTGTGTGATGTGTGA
CAGATGTAACAAACAGTCAGTGTTCACTTGTAGGTGTGGAAGATGTGCGA
GGTGTGACAGGTGCGTGCTGCCTTGTGTGTGGTGATTGGCTTCTATCATG
ATTGGAGGAGCCTCCGCGTGCGTACAGCAAACCCTGTCCAATGAAAATAC
GGGTTTGGGAATTGTGTCTCCAAGAGAAAGGCAGGTTAAAGTGGGGGAAC
GTTGGCCTACCTGGACCGTTTGAAGGGGTCTGGAGAAAATGGGATTCACT
TTTTCTGGAGGAAAATTGTCGATAACGTTTAGGAAGTTTTTGTTTCGGGG
CGAAACTGGCCAAATAAACAACTAATGTTTCGAAACAAAATCCTGTCATG
CGAAGTGGTCGTATATGTAGCCGTCTTACAGAGGTGAGTTCAAAAACCTA
GAGCCTGCCAGCAGTAGGAAGAGAAGGGCGTGTGCGCTCGAGAATGCTGA
GGCCGAGATGATCTCTCATTCATGTCAATTCATGGCCTGTATGGATCTTT
CTTTTTTGAAGGGTAGATAGAGAACGCTGCAGGTGTTTTTGCGGGCAGAG
TTTGGTGCTAACAATCGCCCCTGAGAGCGGTCTCATGCGATACCAGGTAT
TTGTTGATTCAGTGTTTTTGGGTGTCATTTTTCCGCGTACGTGATTGACG
ATATGAGAGGCGAATACGTATACCACCGCATGCGCGTGAGCGTAAACGCC
AGTAGTTCGGGATAATAACTTTTTGCTTCCCGGAAAAATCTAGACACGCA
AAGAAGGCGACCTAAGCGTATCACCGGGAATGTGTGGGGTCATGGTGCGT
CTTGGCGTCTGAAGAACGCGAAAAAGGCGCGCATTACCGGTCGGCGCACC
TTATTTGATGGTGTTGAAACTATTACTCCGAGGCAAAGTCTTGTTCTGTG
GTTTGTGGTTTGTGCTTCGTGCTTCGTGCTTTAACCGGAGGACCGACTGC
AAAGCCGCTGCGATAGCGAGTTTTCGTTTTCATGTATCGGTCCATCTGGG
CCCAAAGCACGGCCTGATGATAAGCGTCCGAGCACATGAGGGCTTGGCCT
GACGAGTTACGGGCGTATGGACAAGTGACCCAACAATGGAAATAACAAAA
GCAGGGAATAGCACCCAATAGCCCACGGTACGGTACGGTAGGCTGTTGCT
GTTGCTGTTGCTGTTTGAGAAATCACAGGATCCATCAGTAAATAGGCCCA
AGTGCAATGGAAGGTGGACTTTCGAAGACGCAAAATGTAGGGAAAAGGCC
TTGCTTGGGACGCATATGTTATCTAGAATTTCCGTCTCGGAACAAGCATG
GCTTGTGTCTTGTGCGACAGACTGAAATTGCCTACGCTCGTGTGTTGGGG
TATTGATGGAGCAAGGACATGAGTGGTGGGTGGGACGAGAGACGCTTTTT
TACTCTCGTGCGAGCCTAGACTAGATATTATAAATAGCATAACATGCAAA
TGAACCCATCGCCCATAAGCGTACCTGGCTTTATCCCCTCACACGAGCGG
AGAGAGAATGCCAAGTGATTAAACGAAAGTGCAATGGAGTTATGTCGCAG
AAGGTTTGTTGACGAGAGTTATCCTCCGAGAATTCGTTTCTTCCGAAGAA
GATTCGATTCTTGGTATTTGGATAGCCCCGCACACCGTAAAGCGCTAGTA
CCTATAACGTGCACGGTAACTTGAGGAGGGCCTTCCGAGGTGCTATTTTT
TATTTTTGGCTGACACATTGTAACGACGAAGGTGTAAATGTTTCGTTTGG
GGACGTTCGGTGAAAAATAGGCAATGGTATACTACTCACTATACAGTTTC
ACGGACAGTAGTATCAAAAATGTTTTGGCAGCTGTTGAAAGAGCCCTCAT
ATTTTTCGCAACGGAGGGCTGGCTATATTGGTGGGAAACATGTTCCCTTC
TGCCTCGAAGCTTCGAAGCCGTAGGCCTGTCTGCTCACGCGGTTGGTGAC
GAAATGCAGTCGTAATTGTGTTGTGTCAACTATACACATCATTTGCGGTG
CAGGGTCTGTTGGTAAAGCTGGTAGAAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2278:8355..12484+

>mRNA_H-paniculata_contig2278.6068.1 ID=mRNA_H-paniculata_contig2278.6068.1|Name=mRNA_H-paniculata_contig2278.6068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig2278:8355..12484+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCTGGGAGACAACAGCCCAGTCCTCGATATGCTGGTCTATGAAAG
AAACGAGTGGCACAACATTCATGGACCTCCGCATGAGTTCCTGGCCATGA
ACCCCCACGCCGTAACCGTGGGGAATCACGAAGGGGAAGTTTACCGTCAC
GAGATGGAGCTGGGAGACAACAGCCCAGTCCTCGATATGCTGGTCTATGA
AAGAAACGAGTGGCACAACATTCATGGACCTCCGCATGAGTTCCTGGCCA
TGAACCCCCACGCCGTAACCGTGGGGAATCACGAAGGGGAAGTTTACCGT
CACGAGGGTCTGTTGGTAAAGCTGGTAGAAGCGGGTCTGTTGGTAAAGCT
GGTAGAAGCG
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