mRNA_H-paniculata_contig22761.6063.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22761.6063.1
Unique NamemRNA_H-paniculata_contig22761.6063.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig22761.6063.1 vs. uniprot
Match: A0A6H5KR89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR89_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 8.500e-15
Identity = 35/56 (62.50%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   94 LQERFGGLVDDFREREKDMFFRSKGIEADVESFNWDALRRNTNEIENLQKQAVQRH 261
            L  + G  VD+FREREK+ FF+SKGIE DV+SF+WD LRRNT+EIE LQ++AV+++
Sbjct:   22 LTRKLGAAVDNFREREKETFFKSKGIEGDVDSFDWDELRRNTDEIEQLQREAVEQY 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22761.6063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KR89_9PHAE8.500e-1562.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22761contigH-paniculata_contig22761:268..2427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size553
Cds size369
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22761.6063.1prot_H-paniculata_contig22761.6063.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22761 452..2427 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929633.1215596-UTR-H-paniculata_contig22761:267..4511622929633.1215596-UTR-H-paniculata_contig22761:267..451Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22761 268..451 -
1691480944.28202-UTR-H-paniculata_contig22761:267..4511691480944.28202-UTR-H-paniculata_contig22761:267..451Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22761 268..451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929633.1332393-CDS-H-paniculata_contig22761:451..6821622929633.1332393-CDS-H-paniculata_contig22761:451..682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22761 452..682 -
1691480944.2914321-CDS-H-paniculata_contig22761:451..6821691480944.2914321-CDS-H-paniculata_contig22761:451..682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22761 452..682 -
1622929633.1899576-CDS-H-paniculata_contig22761:2289..24271622929633.1899576-CDS-H-paniculata_contig22761:2289..2427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22761 2290..2427 -
1691480944.3033173-CDS-H-paniculata_contig22761:2289..24271691480944.3033173-CDS-H-paniculata_contig22761:2289..2427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22761 2290..2427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22761.6063.1

>prot_H-paniculata_contig22761.6063.1 ID=prot_H-paniculata_contig22761.6063.1|Name=mRNA_H-paniculata_contig22761.6063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
DGFVRRLEERAEALGGRRAGGQGSTQRKVAPLQERFGGLVDDFREREKDM
FFRSKGIEADVESFNWDALRRNTNEIENLQKQAVQRHRARRQQEEQTNSG
RDPDGGSLYKPSNTRRPPRRHE*
back to top

mRNA from alignment at H-paniculata_contig22761:268..2427-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22761.6063.1 ID=mRNA_H-paniculata_contig22761.6063.1|Name=mRNA_H-paniculata_contig22761.6063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2160bp|location=Sequence derived from alignment at H-paniculata_contig22761:268..2427- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGGTTCGTGAGGAGGTTGGAAGAGCGTGCTGAGGCATTAGGGGGGAG
GAGGGCTGGCGGGCAGGGGAGCACGCAGAGAAAGGTGGCGCCGCTGCAGG
AGCGGTTTGGGGGTCTGGTGGATGACTTCCGGGAGAGAGTGAGGAGGATG
GGGGGGGGGCACTTGAAAATAATGTAAAATAGTGGAGCACTTCAAAATAG
TGTAAAACGGGGAAACACTTGAAATATTGAAAAATGGGAGAGCACTTTCC
TTGTGAGCCTCTCTTCATTAGTCAACCCGTTCTTGTACTTCTCATGATGT
GCAGTTAGTTTGTTTTCCTCATGTAGTGAAGGATGACTGAGGCTATGCAA
CCCCTCAAATGGAATCGAAGCTGCCTATAGTCATCAGCGAAGTTGGAACC
AACAAGGGATGGACGAGGGGGGGCAGGGGGAGGGCAAAGTTGATTTGGAA
ACGACAAGCAGTAATCTGTGTATACGGTGATCTATAGACTGCAGGGGTTA
ACTTGATGAGGAGTAGAAATTTTGGGTGCCTAGAAGGTTCGAGGTGTATG
CGGCGATGTGTGCGTGCTTGCGTTACTCACCTCGACACCGGATTTCGAGA
ATATATACATACATAAATGAAGGTAGATTATGTATTTCAGCTTGTCAGAG
CAGGGTCCTCACAACCGTGTAGCACCATTGTCAATCACCACTGCTCAGCA
ACGTTGCCAAACGAACTTTACCTGGAAAATCAACCGTTTTTCAGCCGCCT
TCTGTGAGAAAAGAGGCCGTGTGCCCTGCCCTGTAGTCACTTTAAAAGAG
AAATTGAGCTGTTTCAACTGAAGCGGGGTGGGAGGAGGGCAAATGTCCAT
CTTAAATGACAAGTTGTCCTGATTTTAGTGTGGAATCATTTCGGAGCAAC
ATTATTTTGTCCATATTTTTGGGGGGCATAGTGGGGGTTCAACTTTGCAT
CTTGATCATATGAATCGCTTCTTCGATGCCTTGGGCATGGTGTGTTCGAG
TGTGTTGTTCTCCCATCTGGGATGAAGGACTGGGTGAGAGGTTGACTGTT
ATGACACCATGCTCGGATGTCGGTTGTGCACGTTTTTGGAACAGATCTGA
CAGTTACATATAATTGTGTTCCTGTTGGTCTGGTTCGGGACTGTCTGTAT
TTTGGTGCAGCCGAATTACCGGCTACAGCAGCCCGTGTCCGGGTGGAGGG
TGAAGCACCCCCCTTCCTGACACTCTCATCTGTTTCCCTAAACGGGACTT
GTAATAAAGAAGTTGTAGGTAAAATCCTCTTCGTTTGTTCCAGACATCAA
TAGGCTTCAGGAGCCTAGGAAATATCGAGTATGGTGCAGTATTGATGCCA
AAATTCAGGTCCGCGCTCAAACTCTTCAGGCGTCTTGCCCGAAAAAAAGG
AGTTTGTATTTTTTCCCAACCCCGGGAAGGTTGAGGCAAAAACCTTTACC
GATACTTCCATACTTGAGTATTTTACCAAAGTATGTCTACATTTCCTTTA
ACAGAACAGAGTTATTCATTCCTCTGCGGGGTAGGAAAAAAAGGAGTTTG
TCATCGTGTGTTCCCCCCCTCCCCTCCTTCAGTTGAAATGGCTCATTGCC
CCCCATCTACAGCAGCGTAGGGGAGGGGCTTGTTGTGCTTGTTTGGGTCC
AAATGACAAGATGTGAAATGCGCGTTCTCAAAAATCAAGCCAAACCTCTT
TGTGGTTGTGTTTTCTCTCTCCGTCTCTCTCTCTCTCTGCGTCAGGAGAA
GGACATGTTCTTCCGGAGCAAGGGCATCGAGGCGGATGTGGAGAGCTTCA
ACTGGGACGCGTTGCGCCGCAACACGAATGAGATCGAGAACTTGCAAAAG
CAGGCCGTGCAGCGGCATCGCGCCCGACGACAGCAGGAAGAACAGACGAA
CTCCGGGCGTGATCCAGATGGCGGCAGCTTGTACAAGCCGAGCAATACGC
GACGGCCCCCCCGGCGGCACGAATAAAGGACTTGATTAGCGTTGTCCATA
TTTTAGGTGTTTTTTTTTTTTCCATTTTTGCCTATTTTCCTGCATTATTA
GGGGAAAATTGGTGATATTCGGAGAATTATTGAGCGACATGTGAGATTTT
GTCGCGATGTTATGCGATATCCGAAAAAACGCCAGTGCGACTTAAGCCCG
TCACTAAATC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig22761:268..2427-

>mRNA_H-paniculata_contig22761.6063.1 ID=mRNA_H-paniculata_contig22761.6063.1|Name=mRNA_H-paniculata_contig22761.6063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig22761:268..2427- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGGTTCGTGAGGAGGTTGGAAGAGCGTGCTGAGGCATTAGGGGGGAG
GAGGGCTGGCGGGCAGGGGAGCACGCAGAGAAAGGTGGCGCCGCTGCAGG
AGCGGTTTGGGGGTCTGGTGGATGACTTCCGGGAGAGAGATGGGTTCGTG
AGGAGGTTGGAAGAGCGTGCTGAGGCATTAGGGGGGAGGAGGGCTGGCGG
GCAGGGGAGCACGCAGAGAAAGGTGGCGCCGCTGCAGGAGCGGTTTGGGG
GTCTGGTGGATGACTTCCGGGAGAGAGAGAAGGACATGTTCTTCCGGAGC
AAGGGCATCGAGGCGGATGTGGAGAGCTTCAACTGGGACGCGTTGCGCCG
CAACACGAATGAGATCGAGAACTTGCAAAAGCAGGCCGTGCAGCGGCATC
GCGCCCGACGACAGCAGGAAGAACAGACGAACTCCGGGCGTGATCCAGAT
GGCGGCAGCTTGTACAAGCCGAGCAATACGCGACGGCCCCCCCGGCGGCA
CGAATAAGAGAAGGACATGTTCTTCCGGAGCAAGGGCATCGAGGCGGATG
TGGAGAGCTTCAACTGGGACGCGTTGCGCCGCAACACGAATGAGATCGAG
AACTTGCAAAAGCAGGCCGTGCAGCGGCATCGCGCCCGACGACAGCAGGA
AGAACAGACGAACTCCGGGCGTGATCCAGATGGCGGCAGCTTGTACAAGC
CGAGCAATACGCGACGGCCCCCCCGGCGGCACGAATAA
back to top