mRNA_H-paniculata_contig22749.6061.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22749.6061.1
Unique NamemRNA_H-paniculata_contig22749.6061.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 209 bits (531), Expect = 3.860e-62
Identity = 107/266 (40.23%), Postives = 161/266 (60.53%), Query Frame = 1
Query:  169 GTITISQGSYIREVLKRYGFDECRGVPTPVE-GKVNISAPDRGRSGNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSRVQFQRLRNLL 963
            G +TISQ +Y++ +LKR+G ++C+ V TP+E GK     PD     N+ EY+ + G L Y +T TRP++A AV   ++    P +E +   KR+ RY+    + G+ F GKS    L G+ D DWA D++ R+ST+GYVF++NG  +SWCS++Q  VT S+TEA+YVA   A +E V+LR LL  IG      + + E+N+ AI+LSK    H RTKHI + +H +R  + +  + + Y      L D + K L R  FQ+ R++L
Sbjct:   36 GKMTISQSTYLQGILKRFGMEQCKPVSTPLEPGKHFQELPDDENPTNTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADVMTKSLPRQTFQKFRDML 301          
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM)

HSP 1 Score: 201 bits (511), Expect = 4.280e-59
Identity = 101/255 (39.61%), Postives = 155/255 (60.78%), Query Frame = 1
Query:  172 TITISQGSYIREVLKRYGFDECRGVPTPVEGKVNISAPDRGRSGNST-EYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSR 933
            TI ++Q +YI+ + +++G ++C+ V TP +    +  P           YR + G+LMY +T TRP++A AV + A+  E   +  +   KRI +YL T  DLG+ F G + G  L G+ D +WA D++ R+STTGYVF LNG AISW S++Q  V  SSTEA+Y+A   A +E V+LR+LL  +G  C G+TT F++N+  I L+K    H RTKHI L++H +R  + + ++ L+Y    + + D   K L+R
Sbjct:   45 TIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKPSEDEDFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALAR 298          
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: A0A2P6R5Z2_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R5Z2_ROSCH)

HSP 1 Score: 201 bits (511), Expect = 7.530e-59
Identity = 107/270 (39.63%), Postives = 165/270 (61.11%), Query Frame = 1
Query:  163 SSGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVNISAPDRGRSGNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGH---GLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSRVQFQRLRNLL 963
            SSG I ++Q  Y +EVL+R+   +C  V TP +  + +     G+  ++T ++ + GSLMY +T TRP++ YAV   +R  E P        KRIFRYL    D G+ +  ++      GL GF D+D+A DV+DRKST+G VF L  G +SW S+KQ +VT S+TEA++VAA     + ++LR+LLG +G   +G T ++ +N  AI LSK   +H R+KHI +R+H +R   ++G++ + Y +  DQ+ D + K L    F++LR+LL
Sbjct:   32 SSGGIFVTQRKYAQEVLERFQMKDCNSVTTPTDPTIKLKKDSEGKKIDATLFKQIVGSLMYLTT-TRPDIMYAVSLISRYMESPTELHLFAAKRIFRYLKGTIDFGMWYKRETEAGMSVGLYGFTDSDYAGDVDDRKSTSGNVFLLGSGVVSWGSKKQPIVTLSTTEAEFVAATSGACQAIWLRKLLGVLGNNQQGPTDIYCDNVSAIKLSKNPVLHGRSKHIDVRYHFLRDLCKDGVINVIYCKSEDQIADIMTKPLKTAVFEKLRSLL 300          
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: A0A060SU91_PYCCI (Uncharacterized protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SU91_PYCCI)

HSP 1 Score: 199 bits (505), Expect = 1.500e-58
Identity = 114/276 (41.30%), Postives = 156/276 (56.52%), Query Frame = 1
Query:  172 TITISQGSYIREVLKRYGFDECRGVPTPVEGKVNISAPDRGRSGNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNG---HGLE--GFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIG---FGCRGSTT----LFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSRVQFQRLRNLL 963
            T++ISQ  Y+  +LKR+G  +CR V TP+E    +         +   Y+   G+LMYA  G+RP++A+AV   ++    PG E ++   R+FRYL     L +T+G        HGL   G+ D DWA D  DR+ST+ YVFKL GGAISWCSRKQQ +  SSTEA+YVA   A KE ++L  LL  +    F    S      +  +N+ A+ L+K S  H RTKHI +R H IR  +  G L ++YV  GDQ+ D L K L+R +     NLL
Sbjct:    7 TLSISQEQYVETILKRHGMSDCRPVSTPMEANFKLDKLAEAEI-DPKPYQSALGALMYAMLGSRPDIAFAVGTLSKHASTPGTEHWNALMRVFRYLRGTSGLRLTYGKDLKPLCEHGLTVVGYSDADWAGDRNDRRSTSAYVFKLGGGAISWCSRKQQSIAQSSTEAEYVALALAAKEGLWLSTLLSDLDSPVFHALSSRLQVPLILVDNQSAMALAKNSSFHDRTKHIAVRHHFIRDELERGTLTVEYVPTGDQVADVLTKSLAREKHTYFTNLL 281          
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: A0A4Y9ZSL8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZSL8_9AGAM)

HSP 1 Score: 197 bits (502), Expect = 1.660e-57
Identity = 107/262 (40.84%), Postives = 147/262 (56.11%), Query Frame = 1
Query:  172 TITISQGSYIREVLKRYGFDECRGVPTPV---EGKVNISAPDRGRSGNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSRVQFQR 948
            TIT+SQ  Y+ E+LK  G+ +   + TPV   E    + AP+     +   Y+   GSLMYA  GTRP++AY V   ++ T  PG          F+YL    D  + F GK     L G+VD DWA DV DR+S +GY F L GGAISW S+KQ     SSTEA+Y+ A  A KE  +LR  L  IG  C+ +T L  +N+ A+ ++     H RTKHI +R+H +R  +  G + L+YV  GDQ+ D LMKGL + +  +
Sbjct:   65 TITLSQCRYVEEILKCAGYSDACPIATPVLANEHMAKVDAPEV----DVLTYQSGIGSLMYAMLGTRPDLAYTVGVLSQHTAKPGEAHQHALVHAFKYLRGTADYQLVFDGKKPWE-LTGYVDADWAGDVNDRRSISGYTFLLAGGAISWSSKKQNTTALSSTEAEYIVATHAAKEATWLRTFLSKIGRPCKAATLLLMDNQSAMAIAWNPAFHARTKHIDMRYHFLREKVEAGAINLQYVPTGDQVADVLMKGLVKAKHNK 321          
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS)

HSP 1 Score: 198 bits (504), Expect = 2.730e-57
Identity = 106/260 (40.77%), Postives = 155/260 (59.62%), Query Frame = 1
Query:  175 ITISQGSYIREVLKRYGFDECRGVPTPVEGKVNISAPDRGRSGNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSRVQFQRLR 954
            I I+Q  Y  E LK+YG + C  V  P+     +S    G + + T ++ + GSL Y  T TRP++ Y+V+  +R  E+P  +     KRI RY+      GI +  +  G  L GFVD+D+A DV+DRKST+GYVF L GGA+SW S+KQ +VT S+TEA++VAA     + ++LR +LG IG+     TTLF +N   I LSK   +H R+KHI +R++ +R  + E ++ LK+    DQL D + K +    F+RLR
Sbjct:  109 IFINQQKYAEETLKKYGMEGCNAVKNPIVPGNKLSRAGGGDAADPTMFKQLVGSLRYL-TATRPDLIYSVNLVSRYMENPNEQHLLAAKRILRYVQGTCGFGIRYK-QGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDIMTKAVKLEVFERLR 366          
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 198 bits (503), Expect = 4.720e-57
Identity = 99/265 (37.36%), Postives = 157/265 (59.25%), Query Frame = 1
Query:  169 GTITISQGSYIREVLKRYGFDECRGVPTPVE-GKVNISAPDRGRSGNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSRVQFQRLRNL 960
            G + I Q +Y   ++K+YG + C+ V TPV+     +SA +     N  EY+   GSL+Y S+ TRP++ +AV+  A+ + +   E ++  KRIFRYL    + G+ +   +N   + GF D DWA D+ DRKST+GY F++NG A+SW S+KQ  V  S+ EA+YVA   A +E +++R+LL  +        T++E+N+ AI +SK    H R+KHI +++H +R  + +  L + Y   G  L D   KG+ + QF++LR L
Sbjct:  113 GKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 376          
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F)

HSP 1 Score: 196 bits (497), Expect = 8.770e-57
Identity = 105/268 (39.18%), Postives = 166/268 (61.94%), Query Frame = 1
Query:  160 TSSGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVNISAPDRGRSGNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSRVQFQRLRNLL 963
            T++G   I Q  Y +++L R+  D+C+   TP E  + +     G+  +ST Y+ + GSLMY  T TRP++ YAV   +R  E P     +  KRI RY+    D G+ F  + +G G  G+ D+D+A D++DRKST+G++F LN GAISW S+KQQ+VT SSTEA+YVAA  +  + ++LR++   +G   +G TT++ +N   I LS+   +H R+KHI +R+H +R    +  + L+Y + G+Q+ D L K L +  F++LR++L
Sbjct:   49 TTAGNF-IYQKKYAQDILNRFQMDDCKPFGTPAEYGLKLCKDKGGKEVDSTFYKQIIGSLMYL-TYTRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGV-FYKREDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLGNVQKGPTTIYCDNISTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDEKIVLEYCKSGEQVADILTKPLKQPAFEKLRSML 313          
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM)

HSP 1 Score: 197 bits (502), Expect = 1.220e-56
Identity = 100/255 (39.22%), Postives = 154/255 (60.39%), Query Frame = 1
Query:  172 TITISQGSYIREVLKRYGFDECRGVPTPVEGKVNISAPDRGRSGNST-EYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSR 933
            TI ++Q +YI+ + +++G ++C+ V TP +    +  P           YR + G+LMY +T TRP++A AV + A+  E   +  +   KRI +YL T  DLG+ F G + G  L G+ D  WA D++ R+STTGYVF LNG AISW S++Q  V  SSTEA+Y+A   A +E V+LR+LL  +G  C  +TT+F++N+  I L+K    H RTKHI L++H +R  + + ++ L+Y    + + D   K L+R
Sbjct:  141 TIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKPAEDEVFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVAATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALAR 394          
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: A0A151SR20_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SR20_CAJCA)

HSP 1 Score: 194 bits (493), Expect = 1.720e-56
Identity = 106/261 (40.61%), Postives = 158/261 (60.54%), Query Frame = 1
Query:  181 ISQGSYIREVLKRYGFDECRGVPTPVEGKVNISAPDRGRSGNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSRVQFQRLRNLL 963
            I Q  Y  E+L+R+  + C  V TP E  + +S    G   +ST ++ + GSLMY +T TRP++ YAV   +R  E P        KR+FRYL    DLG+ F  K NG  L GF D+++A D++DR+ST+G+VF +  GAISW S+KQQ+VT S+TEA+++AA  +  + ++LR +L  + F  +G T +  +N   I LS+   +H R+KHI +R+H +R  + E I+ L Y +  DQ+ D L K L    F++LR LL
Sbjct:   38 IGQKKYAHEILERFNMENCNPVGTPTEPGLKLSKDLDGERVDSTYFKRIVGSLMYLTT-TRPDIMYAVCLISRYMERPTELHLKAAKRVFRYLKGTTDLGV-FYKKINGSILTGFTDSNYAGDMDDRRSTSGHVFMIGSGAISWASKKQQVVTLSTTEAEFIAAATSACQAIWLRRILEELHFYQQGPTVIHCDNSSTIKLSRNPILHGRSKHIDVRYHFLRDLVIEKIIDLVYCRSEDQVADILTKPLKLEAFEKLRGLL 296          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9D5L2_PARCT3.860e-6240.23Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
H3GB69_PHYRM4.280e-5939.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6R5Z2_ROSCH7.530e-5939.63Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A060SU91_PYCCI1.500e-5841.30Uncharacterized protein n=2 Tax=Pycnoporus cinnaba... [more]
A0A4Y9ZSL8_9AGAM1.660e-5740.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2JBX5_9BRAS2.730e-5740.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9M6E1_PARCT4.720e-5737.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0009AB427F8.770e-5739.18uncharacterized protein LOC109950541 n=1 Tax=Prunu... [more]
H3GB17_PHYRM1.220e-5639.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151SR20_CAJCA1.720e-5640.61Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22749contigH-paniculata_contig22749:547..1901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score205.3
Seed ortholog evalue4.3e-50
Seed eggNOG ortholog7029.ACYPI24114-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons3
Model size969
Cds size969
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22749.6061.1prot_H-paniculata_contig22749.6061.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22749 547..1901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929632.8749757-CDS-H-paniculata_contig22749:546..6651622929632.8749757-CDS-H-paniculata_contig22749:546..665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22749 547..665 +
1691480944.2303061-CDS-H-paniculata_contig22749:546..6651691480944.2303061-CDS-H-paniculata_contig22749:546..665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22749 547..665 +
1622929632.8931603-CDS-H-paniculata_contig22749:973..11411622929632.8931603-CDS-H-paniculata_contig22749:973..1141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22749 974..1141 +
1691480944.2427454-CDS-H-paniculata_contig22749:973..11411691480944.2427454-CDS-H-paniculata_contig22749:973..1141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22749 974..1141 +
1622929632.9523375-CDS-H-paniculata_contig22749:1219..19011622929632.9523375-CDS-H-paniculata_contig22749:1219..1901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22749 1220..1901 +
1691480944.2526715-CDS-H-paniculata_contig22749:1219..19011691480944.2526715-CDS-H-paniculata_contig22749:1219..1901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22749 1220..1901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22749.6061.1

>prot_H-paniculata_contig22749.6061.1 ID=prot_H-paniculata_contig22749.6061.1|Name=mRNA_H-paniculata_contig22749.6061.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=323bp
PKSAAEALKGSEAEKWRVAVEEEWGALVDNWTWESEDPGRHTVCAPPAQK
SCTTSSGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVNISAPDRGRS
GNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIF
RYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGG
AISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTT
LFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQ
LVDNLMKGLSRVQFQRLRNLLV*
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mRNA from alignment at H-paniculata_contig22749:547..1901+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22749.6061.1 ID=mRNA_H-paniculata_contig22749.6061.1|Name=mRNA_H-paniculata_contig22749.6061.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1355bp|location=Sequence derived from alignment at H-paniculata_contig22749:547..1901+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAAATCCGCAGCAGAGGCATTAAAGGGTTCAGAGGCGGAAAAATGGCG CGTGGCAGTGGAAGAAGAATGGGGGGCGTTGGTGGACAATTGGACATGGG AAAGCGAAGACCCGGGGAGGTTACCGGCAGGGTAGCAGGCGATTCGTACG AAATGGATTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGCCACGCTA CAAAACGCGACTGGTGGCTCAAGGTTTTTCACAGGTGGACGGTGAAGATT TATTTGAAACCAGTGCCACCGTAGCTCGCATGTCGACGTTACGTACTGTT TTTAGCCTGGCCGCCGAACATGATTTCGAATTCGAAGGCATGGACGTAGA TGCGGCGTATTTGAACGCCCCGGTAGAAGAAGAGCTGTTTGTTAAGCTAC TCCCCGAGTTTTCCCCTTTCTCCCGAGACATACCGTTTGTGCGCCGCCTG CGCAAAAATCCTGTACGACCTCAAGCGGTACCATAACCATCTCGCAGGGT AGCTACATCCGCGAGGTACTAAAACGATACGGTTTTGACGAGTGTCGAGG AGTACCCACCCCTGTAGAGGGAAAAGTGAATATTTCGGCACCCGAGTCGG CCGACAAGTTCTCCGAACAGAAGTCATTTGGAGCTGTACTGTCGGACATA GGCGCAGGAGTACGAGAAAACAGCAGAGGGAGAAGCGGCAATTCAACTGA GTACAGAGGCATGGCAGGATCACTCATGTACGCCTCGACAGGAACTAGAC CTAATGTAGCATATGCGGTACATCAAGCAGCACGTCGTACGGAGGATCCA GGTCGGGAGGACTTCAGTACATGCAAGCGCATTTTTCGTTATCTCAGTAC TGTGCCTGACCTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTC TGGAAGGATTCGTTGATACCGATTGGGCGGAAGATGTCGAGGACCGAAAG TCCACAACAGGATACGTATTCAAACTAAACGGTGGTGCGATAAGTTGGTG CTCTAGGAAACAACAGTTAGTCACGTGGTCCAGTACAGAGGCAAAGTACG TTGCTGCAGGAGAAGCGGGGAAGGAGACGGTATATCTTAGGGAGTTACTA GGATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTGTTTGAGAACAA TAAACCAGCTATTGATCTCAGTAAGGCATCTGGCGTACACTGCAGGACAA AGCACATCGGATTGCGCTGGCACGGAATTCGAGCGTGGATTCGGGAAGGA ATACTGGCATTGAAATACGTGCAGATCGGTGATCAACTTGTTGACAATTT AATGAAAGGACTAAGCAGAGTACAGTTTCAGAGACTGAGAAATTTACTCG TGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22749:547..1901+

>mRNA_H-paniculata_contig22749.6061.1 ID=mRNA_H-paniculata_contig22749.6061.1|Name=mRNA_H-paniculata_contig22749.6061.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1938bp|location=Sequence derived from alignment at H-paniculata_contig22749:547..1901+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAAATCCGCAGCAGAGGCATTAAAGGGTTCAGAGGCGGAAAAATGGCG
CGTGGCAGTGGAAGAAGAATGGGGGGCGTTGGTGGACAATTGGACATGGG
AAAGCGAAGACCCGGGGAGCCGAAATCCGCAGCAGAGGCATTAAAGGGTT
CAGAGGCGGAAAAATGGCGCGTGGCAGTGGAAGAAGAATGGGGGGCGTTG
GTGGACAATTGGACATGGGAAAGCGAAGACCCGGGGAGACATACCGTTTG
TGCGCCGCCTGCGCAAAAATCCTGTACGACCTCAAGCGGTACCATAACCA
TCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAACGATACGGTTTTGAC
GAGTGTCGAGGAGTACCCACCCCTGTAGAGGGAAAAGTGAATATTTCGGC
ACCCGAACATACCGTTTGTGCGCCGCCTGCGCAAAAATCCTGTACGACCT
CAAGCGGTACCATAACCATCTCGCAGGGTAGCTACATCCGCGAGGTACTA
AAACGATACGGTTTTGACGAGTGTCGAGGAGTACCCACCCCTGTAGAGGG
AAAAGTGAATATTTCGGCACCCGACAGAGGGAGAAGCGGCAATTCAACTG
AGTACAGAGGCATGGCAGGATCACTCATGTACGCCTCGACAGGAACTAGA
CCTAATGTAGCATATGCGGTACATCAAGCAGCACGTCGTACGGAGGATCC
AGGTCGGGAGGACTTCAGTACATGCAAGCGCATTTTTCGTTATCTCAGTA
CTGTGCCTGACCTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGT
CTGGAAGGATTCGTTGATACCGATTGGGCGGAAGATGTCGAGGACCGAAA
GTCCACAACAGGATACGTATTCAAACTAAACGGTGGTGCGATAAGTTGGT
GCTCTAGGAAACAACAGTTAGTCACGTGGTCCAGTACAGAGGCAAAGTAC
GTTGCTGCAGGAGAAGCGGGGAAGGAGACGGTATATCTTAGGGAGTTACT
AGGATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTGTTTGAGAACA
ATAAACCAGCTATTGATCTCAGTAAGGCATCTGGCGTACACTGCAGGACA
AAGCACATCGGATTGCGCTGGCACGGAATTCGAGCGTGGATTCGGGAAGG
AATACTGGCATTGAAATACGTGCAGATCGGTGATCAACTTGTTGACAATT
TAATGAAAGGACTAAGCAGAGTACAGTTTCAGAGACTGAGAAATTTACTC
GTGTGACAGAGGGAGAAGCGGCAATTCAACTGAGTACAGAGGCATGGCAG
GATCACTCATGTACGCCTCGACAGGAACTAGACCTAATGTAGCATATGCG
GTACATCAAGCAGCACGTCGTACGGAGGATCCAGGTCGGGAGGACTTCAG
TACATGCAAGCGCATTTTTCGTTATCTCAGTACTGTGCCTGACCTCGGCA
TTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGTTGAT
ACCGATTGGGCGGAAGATGTCGAGGACCGAAAGTCCACAACAGGATACGT
ATTCAAACTAAACGGTGGTGCGATAAGTTGGTGCTCTAGGAAACAACAGT
TAGTCACGTGGTCCAGTACAGAGGCAAAGTACGTTGCTGCAGGAGAAGCG
GGGAAGGAGACGGTATATCTTAGGGAGTTACTAGGATCGATAGGTTTCGG
ATGCAGGGGGAGCACGACATTGTTTGAGAACAATAAACCAGCTATTGATC
TCAGTAAGGCATCTGGCGTACACTGCAGGACAAAGCACATCGGATTGCGC
TGGCACGGAATTCGAGCGTGGATTCGGGAAGGAATACTGGCATTGAAATA
CGTGCAGATCGGTGATCAACTTGTTGACAATTTAATGAAAGGACTAAGCA
GAGTACAGTTTCAGAGACTGAGAAATTTACTCGTGTGA
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