mRNA_H-paniculata_contig22749.6061.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT) HSP 1 Score: 209 bits (531), Expect = 3.860e-62 Identity = 107/266 (40.23%), Postives = 161/266 (60.53%), Query Frame = 1
Query: 169 GTITISQGSYIREVLKRYGFDECRGVPTPVE-GKVNISAPDRGRSGNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSRVQFQRLRNLL 963
G +TISQ +Y++ +LKR+G ++C+ V TP+E GK PD N+ EY+ + G L Y +T TRP++A AV ++ P +E + KR+ RY+ + G+ F GKS L G+ D DWA D++ R+ST+GYVF++NG +SWCS++Q VT S+TEA+YVA A +E V+LR LL IG + + E+N+ AI+LSK H RTKHI + +H +R + + + + Y L D + K L R FQ+ R++L
Sbjct: 36 GKMTISQSTYLQGILKRFGMEQCKPVSTPLEPGKHFQELPDDENPTNTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADVMTKSLPRQTFQKFRDML 301
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM) HSP 1 Score: 201 bits (511), Expect = 4.280e-59 Identity = 101/255 (39.61%), Postives = 155/255 (60.78%), Query Frame = 1
Query: 172 TITISQGSYIREVLKRYGFDECRGVPTPVEGKVNISAPDRGRSGNST-EYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSR 933
TI ++Q +YI+ + +++G ++C+ V TP + + P YR + G+LMY +T TRP++A AV + A+ E + + KRI +YL T DLG+ F G + G L G+ D +WA D++ R+STTGYVF LNG AISW S++Q V SSTEA+Y+A A +E V+LR+LL +G C G+TT F++N+ I L+K H RTKHI L++H +R + + ++ L+Y + + D K L+R
Sbjct: 45 TIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKPSEDEDFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALAR 298
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: A0A2P6R5Z2_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R5Z2_ROSCH) HSP 1 Score: 201 bits (511), Expect = 7.530e-59 Identity = 107/270 (39.63%), Postives = 165/270 (61.11%), Query Frame = 1
Query: 163 SSGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVNISAPDRGRSGNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGH---GLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSRVQFQRLRNLL 963
SSG I ++Q Y +EVL+R+ +C V TP + + + G+ ++T ++ + GSLMY +T TRP++ YAV +R E P KRIFRYL D G+ + ++ GL GF D+D+A DV+DRKST+G VF L G +SW S+KQ +VT S+TEA++VAA + ++LR+LLG +G +G T ++ +N AI LSK +H R+KHI +R+H +R ++G++ + Y + DQ+ D + K L F++LR+LL
Sbjct: 32 SSGGIFVTQRKYAQEVLERFQMKDCNSVTTPTDPTIKLKKDSEGKKIDATLFKQIVGSLMYLTT-TRPDIMYAVSLISRYMESPTELHLFAAKRIFRYLKGTIDFGMWYKRETEAGMSVGLYGFTDSDYAGDVDDRKSTSGNVFLLGSGVVSWGSKKQPIVTLSTTEAEFVAATSGACQAIWLRKLLGVLGNNQQGPTDIYCDNVSAIKLSKNPVLHGRSKHIDVRYHFLRDLCKDGVINVIYCKSEDQIADIMTKPLKTAVFEKLRSLL 300
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: A0A060SU91_PYCCI (Uncharacterized protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SU91_PYCCI) HSP 1 Score: 199 bits (505), Expect = 1.500e-58 Identity = 114/276 (41.30%), Postives = 156/276 (56.52%), Query Frame = 1
Query: 172 TITISQGSYIREVLKRYGFDECRGVPTPVEGKVNISAPDRGRSGNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNG---HGLE--GFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIG---FGCRGSTT----LFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSRVQFQRLRNLL 963
T++ISQ Y+ +LKR+G +CR V TP+E + + Y+ G+LMYA G+RP++A+AV ++ PG E ++ R+FRYL L +T+G HGL G+ D DWA D DR+ST+ YVFKL GGAISWCSRKQQ + SSTEA+YVA A KE ++L LL + F S + +N+ A+ L+K S H RTKHI +R H IR + G L ++YV GDQ+ D L K L+R + NLL
Sbjct: 7 TLSISQEQYVETILKRHGMSDCRPVSTPMEANFKLDKLAEAEI-DPKPYQSALGALMYAMLGSRPDIAFAVGTLSKHASTPGTEHWNALMRVFRYLRGTSGLRLTYGKDLKPLCEHGLTVVGYSDADWAGDRNDRRSTSAYVFKLGGGAISWCSRKQQSIAQSSTEAEYVALALAAKEGLWLSTLLSDLDSPVFHALSSRLQVPLILVDNQSAMALAKNSSFHDRTKHIAVRHHFIRDELERGTLTVEYVPTGDQVADVLTKSLAREKHTYFTNLL 281
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: A0A4Y9ZSL8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZSL8_9AGAM) HSP 1 Score: 197 bits (502), Expect = 1.660e-57 Identity = 107/262 (40.84%), Postives = 147/262 (56.11%), Query Frame = 1
Query: 172 TITISQGSYIREVLKRYGFDECRGVPTPV---EGKVNISAPDRGRSGNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSRVQFQR 948
TIT+SQ Y+ E+LK G+ + + TPV E + AP+ + Y+ GSLMYA GTRP++AY V ++ T PG F+YL D + F GK L G+VD DWA DV DR+S +GY F L GGAISW S+KQ SSTEA+Y+ A A KE +LR L IG C+ +T L +N+ A+ ++ H RTKHI +R+H +R + G + L+YV GDQ+ D LMKGL + + +
Sbjct: 65 TITLSQCRYVEEILKCAGYSDACPIATPVLANEHMAKVDAPEV----DVLTYQSGIGSLMYAMLGTRPDLAYTVGVLSQHTAKPGEAHQHALVHAFKYLRGTADYQLVFDGKKPWE-LTGYVDADWAGDVNDRRSISGYTFLLAGGAISWSSKKQNTTALSSTEAEYIVATHAAKEATWLRTFLSKIGRPCKAATLLLMDNQSAMAIAWNPAFHARTKHIDMRYHFLREKVEAGAINLQYVPTGDQVADVLMKGLVKAKHNK 321
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS) HSP 1 Score: 198 bits (504), Expect = 2.730e-57 Identity = 106/260 (40.77%), Postives = 155/260 (59.62%), Query Frame = 1
Query: 175 ITISQGSYIREVLKRYGFDECRGVPTPVEGKVNISAPDRGRSGNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSRVQFQRLR 954
I I+Q Y E LK+YG + C V P+ +S G + + T ++ + GSL Y T TRP++ Y+V+ +R E+P + KRI RY+ GI + + G L GFVD+D+A DV+DRKST+GYVF L GGA+SW S+KQ +VT S+TEA++VAA + ++LR +LG IG+ TTLF +N I LSK +H R+KHI +R++ +R + E ++ LK+ DQL D + K + F+RLR
Sbjct: 109 IFINQQKYAEETLKKYGMEGCNAVKNPIVPGNKLSRAGGGDAADPTMFKQLVGSLRYL-TATRPDLIYSVNLVSRYMENPNEQHLLAAKRILRYVQGTCGFGIRYK-QGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDIMTKAVKLEVFERLR 366
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT) HSP 1 Score: 198 bits (503), Expect = 4.720e-57 Identity = 99/265 (37.36%), Postives = 157/265 (59.25%), Query Frame = 1
Query: 169 GTITISQGSYIREVLKRYGFDECRGVPTPVE-GKVNISAPDRGRSGNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSRVQFQRLRNL 960
G + I Q +Y ++K+YG + C+ V TPV+ +SA + N EY+ GSL+Y S+ TRP++ +AV+ A+ + + E ++ KRIFRYL + G+ + +N + GF D DWA D+ DRKST+GY F++NG A+SW S+KQ V S+ EA+YVA A +E +++R+LL + T++E+N+ AI +SK H R+KHI +++H +R + + L + Y G L D KG+ + QF++LR L
Sbjct: 113 GKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 376
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F) HSP 1 Score: 196 bits (497), Expect = 8.770e-57 Identity = 105/268 (39.18%), Postives = 166/268 (61.94%), Query Frame = 1
Query: 160 TSSGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVNISAPDRGRSGNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSRVQFQRLRNLL 963
T++G I Q Y +++L R+ D+C+ TP E + + G+ +ST Y+ + GSLMY T TRP++ YAV +R E P + KRI RY+ D G+ F + +G G G+ D+D+A D++DRKST+G++F LN GAISW S+KQQ+VT SSTEA+YVAA + + ++LR++ +G +G TT++ +N I LS+ +H R+KHI +R+H +R + + L+Y + G+Q+ D L K L + F++LR++L
Sbjct: 49 TTAGNF-IYQKKYAQDILNRFQMDDCKPFGTPAEYGLKLCKDKGGKEVDSTFYKQIIGSLMYL-TYTRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGV-FYKREDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLGNVQKGPTTIYCDNISTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDEKIVLEYCKSGEQVADILTKPLKQPAFEKLRSML 313
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM) HSP 1 Score: 197 bits (502), Expect = 1.220e-56 Identity = 100/255 (39.22%), Postives = 154/255 (60.39%), Query Frame = 1
Query: 172 TITISQGSYIREVLKRYGFDECRGVPTPVEGKVNISAPDRGRSGNST-EYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSR 933
TI ++Q +YI+ + +++G ++C+ V TP + + P YR + G+LMY +T TRP++A AV + A+ E + + KRI +YL T DLG+ F G + G L G+ D WA D++ R+STTGYVF LNG AISW S++Q V SSTEA+Y+A A +E V+LR+LL +G C +TT+F++N+ I L+K H RTKHI L++H +R + + ++ L+Y + + D K L+R
Sbjct: 141 TIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKPAEDEVFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVAATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALAR 394
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Match: A0A151SR20_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SR20_CAJCA) HSP 1 Score: 194 bits (493), Expect = 1.720e-56 Identity = 106/261 (40.61%), Postives = 158/261 (60.54%), Query Frame = 1
Query: 181 ISQGSYIREVLKRYGFDECRGVPTPVEGKVNISAPDRGRSGNSTEYRGMAGSLMYASTGTRPNVAYAVHQAARRTEDPGREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDTDWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAKYVAAGEAGKETVYLRELLGSIGFGCRGSTTLFENNKPAIDLSKASGVHCRTKHIGLRWHGIRAWIREGILALKYVQIGDQLVDNLMKGLSRVQFQRLRNLL 963
I Q Y E+L+R+ + C V TP E + +S G +ST ++ + GSLMY +T TRP++ YAV +R E P KR+FRYL DLG+ F K NG L GF D+++A D++DR+ST+G+VF + GAISW S+KQQ+VT S+TEA+++AA + + ++LR +L + F +G T + +N I LS+ +H R+KHI +R+H +R + E I+ L Y + DQ+ D L K L F++LR LL
Sbjct: 38 IGQKKYAHEILERFNMENCNPVGTPTEPGLKLSKDLDGERVDSTYFKRIVGSLMYLTT-TRPDIMYAVCLISRYMERPTELHLKAAKRVFRYLKGTTDLGV-FYKKINGSILTGFTDSNYAGDMDDRRSTSGHVFMIGSGAISWASKKQQVVTLSTTEAEFIAAATSACQAIWLRRILEELHFYQQGPTVIHCDNSSTIKLSRNPILHGRSKHIDVRYHFLRDLVIEKIIDLVYCRSEDQVADILTKPLKLEAFEKLRGLL 296 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22749.6061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22749.6061.1 >prot_H-paniculata_contig22749.6061.1 ID=prot_H-paniculata_contig22749.6061.1|Name=mRNA_H-paniculata_contig22749.6061.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=323bp PKSAAEALKGSEAEKWRVAVEEEWGALVDNWTWESEDPGRHTVCAPPAQKback to top mRNA from alignment at H-paniculata_contig22749:547..1901+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22749.6061.1 ID=mRNA_H-paniculata_contig22749.6061.1|Name=mRNA_H-paniculata_contig22749.6061.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1355bp|location=Sequence derived from alignment at H-paniculata_contig22749:547..1901+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22749:547..1901+ >mRNA_H-paniculata_contig22749.6061.1 ID=mRNA_H-paniculata_contig22749.6061.1|Name=mRNA_H-paniculata_contig22749.6061.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1938bp|location=Sequence derived from alignment at H-paniculata_contig22749:547..1901+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |