mRNA_H-paniculata_contig22740.6059.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22740.6059.1
Unique NamemRNA_H-paniculata_contig22740.6059.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22740.6059.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.620e-34
Identity = 74/178 (41.57%), Postives = 96/178 (53.93%), Query Frame = 1 
Query:    1 LVAPGLGRNLFSVQQVAQNGVASIFDMDKPRLEVSNFTLPFQDLASD-------LYFFSLDLTNGSGAPELAGPD--------ATLWHGRLGHLNPKSLELLKKRDHHGVSFDGTVPDCDVCAVRKSHQLAHPKTADNKGKHPFQLVFIELMGPITPEALGDFKYISKISDERTKWTE 489
            ++ PGLG NLFSV     NGVAS+F  D PRLE ++  +P +    D            L   NG        PD        A LWH R+GH+N KSL++L+++   G+ + G V DC  C + KS Q  HPK A      PFQLVF++ +GP TP ALG FKY +K  D+ TKW E
Sbjct:  490 MLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKE 667
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BLAST of mRNA_H-paniculata_contig22740.6059.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.910e-34
Identity = 74/178 (41.57%), Postives = 96/178 (53.93%), Query Frame = 1 
Query:    1 LVAPGLGRNLFSVQQVAQNGVASIFDMDKPRLEVSNFTLPFQDLASD-------LYFFSLDLTNGSGAPELAGPD--------ATLWHGRLGHLNPKSLELLKKRDHHGVSFDGTVPDCDVCAVRKSHQLAHPKTADNKGKHPFQLVFIELMGPITPEALGDFKYISKISDERTKWTE 489
            ++ PGLG NLFSV     NGVAS+F  D PRLE ++  +P +    D            L   NG        PD        A LWH R+GH+N KSL++L+++   G+ + G V DC  C + KS Q  HPK A      PFQLVF++ +GP TP ALG FKY +K  D+ TKW E
Sbjct:  490 VLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKE 667
[Close]
BLAST of mRNA_H-paniculata_contig22740.6059.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 4.090e-34
Identity = 74/177 (41.81%), Postives = 95/177 (53.67%), Query Frame = 1 
Query:    4 VAPGLGRNLFSVQQVAQNGVASIFDMDKPRLEVSNFTLPFQDLASD-------LYFFSLDLTNGSGAPELAGPD--------ATLWHGRLGHLNPKSLELLKKRDHHGVSFDGTVPDCDVCAVRKSHQLAHPKTADNKGKHPFQLVFIELMGPITPEALGDFKYISKISDERTKWTE 489
            + PGLG NLFSV     NGVAS+F  D PRLE ++  +P +    D            L   NG        PD        A LWH R+GH+N KSL++L+++   G+ + G V DC  C + KS Q  HPK A      PFQLVF++ +GP TP ALG FKY +K  D+ TKW E
Sbjct:  613 LVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLPLRVETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKE 789
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BLAST of mRNA_H-paniculata_contig22740.6059.1 vs. uniprot
Match: A0A6H5KDX9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX9_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.080e-33
Identity = 73/179 (40.78%), Postives = 95/179 (53.07%), Query Frame = 1 
Query:    1 LVAPGLGRNLFSVQQVAQNGVASIFDMDKPRLEVSNFTLPFQDLASD------LYFFSLDLTNGSGAPELAG--PDAT--------LWHGRLGHLNPKSLELLKKRDHHGVSFDGTVPDCDVCAVRKSHQLAHPKTADNKGKHPFQLVFIELMGPITPEALGDFKYISKISDERTKWTE 489
            ++ PG G NLFSV      GVA++F  D  RL+  +   P Q L  D      +Y   + L    G P + G  PDA         LWH  +GH+N KSL++L+K   HGV + G V DC VC + KS Q  HPK A      PFQ V ++ +GP TP ALG FKY +   D++TKW E
Sbjct:  359 ILVPGPGTNLFSVTLAMLKGVATLFHPDNTRLDSGDVVFPMQTLGVDATTGKRIYSIEVKLGREPGGPTVLGDAPDALALKVESADLWHRHMGHINGKSLDVLRKEPVHGVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVDTLGPSTPTALGGFKYATNFVDQQTKWAE 537
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BLAST of mRNA_H-paniculata_contig22740.6059.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.120e-32
Identity = 72/173 (41.62%), Postives = 92/173 (53.18%), Query Frame = 1 
Query:   19 GRNLFSVQQVAQNGVASIFDMDKPRLEVSNFTLPFQDLASD------LYFFSLDLTNGSGAPELAG--PDAT--------LWHGRLGHLNPKSLELLKKRDHHGVSFDGTVPDCDVCAVRKSHQLAHPKTADNKGKHPFQLVFIELMGPITPEALGDFKYISKISDERTKWTE 489
            G NLFSV      GV ++F  D PRLE  +   P Q L  D      +Y   + L    G P + G  PDA         LWH R+GH+N KSL++L+K   +GV + G V DC VC + KS Q  HPK        PFQ V ++ +GP TP ALG FKY +K  D++TKW E
Sbjct:  208 GTNLFSVTLAMLKGVETLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPGGPTVLGDAPDALALKVESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAE 380
[Close]
BLAST of mRNA_H-paniculata_contig22740.6059.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.230e-32
Identity = 72/178 (40.45%), Postives = 93/178 (52.25%), Query Frame = 1 
Query:    1 LVAPGLGRNLFSVQQVAQNGVASIFDMDKPRLEVSNFTLPFQDLASD-------LYFFSLDLTNGSGAPELAGPD--------ATLWHGRLGHLNPKSLELLKKRDHHGVSFDGTVPDCDVCAVRKSHQLAHPKTADNKGKHPFQLVFIELMGPITPEALGDFKYISKISDERTKWTE 489
            ++ PGLG NLFSV     NGVAS+F  D PRLE ++  +P +    D            L   NG        PD        A LWH R+GH+N KSL++L+++   G+ + G V DC  C + KS Q  HPK A      PFQLVF++  GP T   LG FKY +K  D+ TKW E
Sbjct:  395 VLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKE 572
[Close]
BLAST of mRNA_H-paniculata_contig22740.6059.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 4.150e-30
Identity = 69/179 (38.55%), Postives = 93/179 (51.96%), Query Frame = 1 
Query:    1 LVAPGLGRNLFSVQQVAQNGVASIFDMDKPRLEVSNFTLPFQDLASD------LYFFSLDLTNGSGAPELAG--PDAT--------LWHGRLGHLNPKSLELLKKRDHHGVSFDGTVPDCDVCAVRKSHQLAHPKTADNKGKHPFQLVFIELMGPITPEALGDFKYISKISDERTKWTE 489
            ++ PGLG NLFSV      G+A++F  D PRLE  +   P Q L  D      +Y   + L      P + G  PDA         LWH R+G +N KSL++L+K+  + V + G V DC VC + KS Q  HPK A      PFQ V +  + P TP  LG FK  +K  D++TKW +
Sbjct:  669 ILVPGLGTNLFSVTLAMLKGMATLFHPDNPRLESRDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTILGDAPDALALKVESADLWHRRMGRINGKSLDVLRKKQVNSVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVHTLRPFTPTVLGGFKNATKFVDQQTKWAK 847
[Close]
BLAST of mRNA_H-paniculata_contig22740.6059.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.930e-29
Identity = 71/179 (39.66%), Postives = 93/179 (51.96%), Query Frame = 1 
Query:    1 LVAPGLGRNLFSVQQVAQNGVASIFDMDKPRLEVSNFTLPFQDLASD------LYFFSLDLTNGSGAPELAG--PDAT--------LWHGRLGHLNPKSLELLKKRDHHGVSFDGTVPDCDVCAVRKSHQLAHPKTADNKGKHPFQLVFIELMGPITPEALGDFKYISKISDERTKWTE 489
            ++ PGLG NLFSV      GVA++F  D PRLE  +   P Q L  D      +Y   + L      P + G  PDA         LWH R+GH+N K+L++L+K   +GV + G V  C VC + KS Q  HPK A      PFQ    + + P TP ALG  KY +K  D++TKW E
Sbjct:  416 ILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTVLGDAPDALALKVESADLWHRRMGHINGKNLDVLRKEQVNGVDYIGDVKYCSVCPLGKSAQQPHPKQATYGVLRPFQH---DTLSPFTPTALGGSKYATKFVDQQTKWAE 591
[Close]
BLAST of mRNA_H-paniculata_contig22740.6059.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.750e-28
Identity = 64/160 (40.00%), Postives = 85/160 (53.12%), Query Frame = 1 
Query:    1 LVAPGLGRNLFSVQQVAQNGVASIFDMDKPRLEVSNFTLPFQDLASDLYFFSLDLTNGSGAPELAGPDATLWHGRLGHLNPKSLELLKKRDHHGVSFDGTVPDCDVCAVRKSHQLAHPKTADNKGKHPFQLVFIELMGPITPEALGDFKYISKISDERTK 480
            ++ PGLG  LFSV      GVA++   D  RLE  +   P Q L        +D T G     +    A LWH R+GH+N KSL++L+K   +GV + G V DC VC + KS Q  HPK A      PFQ V ++ +GP TP AL  FK  +K  D++ K
Sbjct:  580 VLVPGLGTKLFSVTLAMLKGVATLCHPDNHRLESGDVVFPMQTLG-------VDATTGKRIYSIEVESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVDTLGPFTPTALSGFKVATKFVDQKDK 732
[Close]
BLAST of mRNA_H-paniculata_contig22740.6059.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.130e-27
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:  163 LTNGSGAPELAGPDATLWHGRLGHLNPKSLELLKKRDHHGVSFDGTVPDCDVCAVRKSHQLAHPKTADNKGKHPFQLVFIELMGPITPEALGDFKYISKISDERTKWTE 489
            + NG G   L    A LWH R+GH+N KSL++L+K  ++GV     V DC  CA+ KS Q  HPK A    K PFQLVF++ +GP TP ALG FKY +K  D++TKW E
Sbjct:  512 IENGPGGLALKVESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAE 620
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22740.6059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J842_9PHAE1.620e-3441.57Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJN3_9PHAE2.910e-3441.57Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE4.090e-3441.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX9_9PHAE1.080e-3340.78CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KXM1_9PHAE2.120e-3241.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYB5_9PHAE2.230e-3240.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVF6_9PHAE4.150e-3038.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9Q7_9PHAE1.930e-2939.66gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5JKW9_9PHAE1.750e-2840.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBV6_9PHAE1.130e-2749.54Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22740contigH-paniculata_contig22740:682..1182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score70.1
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog4530.OS08T0125300-01
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size501
Cds size501
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929632.6336474-CDS-H-paniculata_contig22740:681..11821622929632.6336474-CDS-H-paniculata_contig22740:681..1182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22740 682..1182 -
1691480944.1755178-CDS-H-paniculata_contig22740:681..11821691480944.1755178-CDS-H-paniculata_contig22740:681..1182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22740 682..1182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22740.6059.1prot_H-paniculata_contig22740.6059.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22740 682..1182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22740.6059.1

>prot_H-paniculata_contig22740.6059.1 ID=prot_H-paniculata_contig22740.6059.1|Name=mRNA_H-paniculata_contig22740.6059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
LVAPGLGRNLFSVQQVAQNGVASIFDMDKPRLEVSNFTLPFQDLASDLYF
FSLDLTNGSGAPELAGPDATLWHGRLGHLNPKSLELLKKRDHHGVSFDGT
VPDCDVCAVRKSHQLAHPKTADNKGKHPFQLVFIELMGPITPEALGDFKY
ISKISDERTKWTEPRR*
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mRNA from alignment at H-paniculata_contig22740:682..1182-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22740.6059.1 ID=mRNA_H-paniculata_contig22740.6059.1|Name=mRNA_H-paniculata_contig22740.6059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=501bp|location=Sequence derived from alignment at H-paniculata_contig22740:682..1182- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTTGCACCTGGTTTGGGGCGCAACCTGTTCTCGGTACAGCAAGTGGC
GCAAAATGGCGTCGCGTCGATCTTCGATATGGACAAACCTAGACTGGAGG
TAAGCAACTTCACCCTACCGTTTCAAGACCTGGCGAGCGACCTCTACTTC
TTCTCGCTAGATCTCACCAACGGCAGCGGCGCGCCAGAGCTAGCTGGGCC
TGATGCCACTCTATGGCATGGGCGGCTTGGACACCTCAACCCCAAGAGCC
TGGAGCTTCTGAAGAAGAGGGATCACCATGGGGTGAGCTTCGATGGGACC
GTTCCGGATTGCGACGTCTGCGCCGTGAGGAAGAGCCACCAGCTGGCCCA
CCCCAAGACGGCCGATAACAAGGGCAAGCACCCTTTCCAGCTGGTTTTCA
TAGAATTGATGGGACCCATCACGCCGGAGGCACTCGGGGACTTTAAGTAT
ATTAGCAAGATCTCCGACGAACGCACAAAATGGACCGAACCCCGCCGCTG
A
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Coding sequence (CDS) from alignment at H-paniculata_contig22740:682..1182-

>mRNA_H-paniculata_contig22740.6059.1 ID=mRNA_H-paniculata_contig22740.6059.1|Name=mRNA_H-paniculata_contig22740.6059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig22740:682..1182- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTTGCACCTGGTTTGGGGCGCAACCTGTTCTCGGTACAGCAAGTGGC
GCAAAATGGCGTCGCGTCGATCTTCGATATGGACAAACCTAGACTGGAGG
TAAGCAACTTCACCCTACCGTTTCAAGACCTGGCGAGCGACCTCTACTTC
TTCTCGCTAGATCTCACCAACGGCAGCGGCGCGCCAGAGCTAGCTGGGCC
TGATGCCACTCTATGGCATGGGCGGCTTGGACACCTCAACCCCAAGAGCC
TGGAGCTTCTGAAGAAGAGGGATCACCATGGGGTGAGCTTCGATGGGACC
GTTCCGGATTGCGACGTCTGCGCCGTGAGGAAGAGCCACCAGCTGGCCCA
CCCCAAGACGGCCGATAACAAGGGCAAGCACCCTTTCCAGCTGGTTTTCA
TAGAATTGATGGGACCCATCACGCCGGAGGCACTCGGGGACTTTAAGTAT
ATTAGCAAGATCTCCGACGAACGCACAAAATGGACCGAACCCCGCCGCTG
ACTGGTTGCACCTGGTTTGGGGCGCAACCTGTTCTCGGTACAGCAAGTGG
CGCAAAATGGCGTCGCGTCGATCTTCGATATGGACAAACCTAGACTGGAG
GTAAGCAACTTCACCCTACCGTTTCAAGACCTGGCGAGCGACCTCTACTT
CTTCTCGCTAGATCTCACCAACGGCAGCGGCGCGCCAGAGCTAGCTGGGC
CTGATGCCACTCTATGGCATGGGCGGCTTGGACACCTCAACCCCAAGAGC
CTGGAGCTTCTGAAGAAGAGGGATCACCATGGGGTGAGCTTCGATGGGAC
CGTTCCGGATTGCGACGTCTGCGCCGTGAGGAAGAGCCACCAGCTGGCCC
ACCCCAAGACGGCCGATAACAAGGGCAAGCACCCTTTCCAGCTGGTTTTC
ATAGAATTGATGGGACCCATCACGCCGGAGGCACTCGGGGACTTTAAGTA
TATTAGCAAGATCTCCGACGAACGCACAAAATGGACCGAACCCCGCCGCT
GA
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