prot_H-paniculata_contig22733.6058.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig22733.6058.1
Unique Nameprot_H-paniculata_contig22733.6058.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length50
Homology
BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: D8LU34_ECTSI (U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU34_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-11
Identity = 30/42 (71.43%), Postives = 39/42 (92.86%), Query Frame = 0
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAK 42
            R+TIVQHLLNDS DPFNR+ L+EDM++PQ ELR+RI++FLA+
Sbjct:  913 RSTIVQHLLNDSMDPFNRQPLTEDMVEPQTELRERIEEFLAR 954          
BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: A0A835Z369_9STRA (Ubiquitin elongating factor core-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z369_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.010e-11
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 0
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKG 43
            RATI+QHLLND  DPFNRK LS DMLQPQ EL+ RID +LAK 
Sbjct:  822 RATIMQHLLNDETDPFNRKPLSVDMLQPQVELKARIDAYLAKA 864          
BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: A0A1B6KM91_9HEMI (U-box domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6KM91_9HEMI)

HSP 1 Score: 57.8 bits (138), Expect = 1.770e-9
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSSS 49
            R TI++HLLN S DPF+R+ LSEDMLQP PEL++RI  +  +  +K SS
Sbjct:   63 RDTIIRHLLNSSTDPFSRQPLSEDMLQPAPELKERIQVWKREKLKKQSS 111          
BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: A0A7S0V9M9_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V9M9_9CRYP)

HSP 1 Score: 60.5 bits (145), Expect = 2.180e-9
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 0
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSSS 49
            R T+V+HLL+D  DPFNR+ L+ DML+PQ EL+QRI +F+AK K  +S+
Sbjct:  500 RTTVVRHLLSDETDPFNRQRLTIDMLEPQVELKQRIQEFVAKRKLDAST 548          
BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: A0A6U2CMW7_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2CMW7_HEMAN)

HSP 1 Score: 60.5 bits (145), Expect = 2.180e-9
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 0
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSSS 49
            R T+V+HLL+D  DPFNR+ L+ DML+PQ EL+QRI +F+AK K  +S+
Sbjct:  926 RTTVVRHLLSDETDPFNRQRLTIDMLEPQVELKQRIQEFVAKRKLDAST 974          
BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: A0A6F9DWR3_9ASCI (Ubiquitin conjugation factor E4 B n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DWR3_9ASCI)

HSP 1 Score: 58.5 bits (140), Expect = 1.040e-8
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSSS 49
            R  I++HLLN S DPFNR+ L EDMLQP PELRQ+I D++ + + K S+
Sbjct:  998 RNIIMRHLLNSSTDPFNRQELKEDMLQPVPELRQKITDWIEEKESKISN 1046          
BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: UPI0006B07812 (ubiquitin conjugation factor E4 A-like isoform X1 n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B07812)

HSP 1 Score: 57.8 bits (138), Expect = 1.950e-8
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSS 48
            R+TI +HLL+D +DPFNR  LS DM+ P PEL+Q+I ++L K +R SS
Sbjct: 1030 RSTIARHLLSDQSDPFNRSPLSMDMVIPDPELKQKIQEWLEKQRRVSS 1077          
BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: UPI0020076995 (ubiquitin elongating factor core-domain-containing protein n=1 Tax=Epithele typhae TaxID=378194 RepID=UPI0020076995)

HSP 1 Score: 57.8 bits (138), Expect = 1.950e-8
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSSS 49
            RATI  HLL+DS DPFNR  LS D ++P  EL+QRID FLA+ + K+++
Sbjct: 1037 RATIKSHLLSDSKDPFNRTPLSLDQVEPNVELKQRIDAFLAERRNKNTA 1085          
BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: UPI00193DDA46 (ubiquitin conjugation factor E4 B isoform X1 n=2 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193DDA46)

HSP 1 Score: 57.8 bits (138), Expect = 1.950e-8
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 0
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSSS 49
            R+ IV+HLLN S DPF+R+ LSEDML+P PEL+QRI+ +  +  +KS S
Sbjct: 1104 RSVIVRHLLNSSTDPFSRQPLSEDMLKPAPELKQRIEAWKQEKCKKSDS 1152          
BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: A0A0G4III8_PLABS (U-box domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4III8_PLABS)

HSP 1 Score: 57.4 bits (137), Expect = 2.670e-8
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSS 48
            R TI +HLLN+  DPFNR+ LS + L P PEL+QRIDD++ + KRK S
Sbjct:  864 RPTIERHLLNNPTDPFNRQPLSVEELIPNPELKQRIDDWMQERKRKPS 911          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU34_ECTSI1.070e-1171.43U-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z369_9STRA2.010e-1174.42Ubiquitin elongating factor core-domain-containing... [more]
A0A1B6KM91_9HEMI1.770e-957.14U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S0V9M9_9CRYP2.180e-957.14Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A6U2CMW7_HEMAN2.180e-957.14Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A6F9DWR3_9ASCI1.040e-857.14Ubiquitin conjugation factor E4 B n=1 Tax=Phallusi... [more]
UPI0006B078121.950e-856.25ubiquitin conjugation factor E4 A-like isoform X1 ... [more]
UPI00200769951.950e-857.14ubiquitin elongating factor core-domain-containing... [more]
UPI00193DDA461.950e-857.14ubiquitin conjugation factor E4 B isoform X1 n=2 T... [more]
A0A0G4III8_PLABS2.670e-858.33U-box domain-containing protein n=1 Tax=Plasmodiop... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..49
e-value: 1.3E-10
score: 43.1
IPR003613U box domainPFAMPF04564U-boxcoord: 1..42
e-value: 1.2E-11
score: 44.6
IPR003613U box domainPROSITEPS51698U_BOXcoord: 1..46
score: 14.447
NoneNo IPR availablePANTHERPTHR13931:SF2UBIQUITIN CONJUGATION FACTOR E4 Acoord: 1..47
NoneNo IPR availablePANTHERPTHR13931UBIQUITINATION FACTOR E4coord: 1..47
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 1..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22733contigH-paniculata_contig22733:3441..3590 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22733.6058.1mRNA_H-paniculata_contig22733.6058.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig22733 3441..3590 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig22733.6058.1 ID=prot_H-paniculata_contig22733.6058.1|Name=mRNA_H-paniculata_contig22733.6058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSSS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR003613Ubox_domain