mRNA_H-paniculata_contig22732.6056.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT) HSP 1 Score: 162 bits (411), Expect = 1.880e-45 Identity = 79/195 (40.51%), Postives = 120/195 (61.54%), Query Frame = 3
Query: 120 VLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVE-GRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDLL 701
VLG+ +RRDR G +TISQ +Y++ +LKR+G ++C+ VSTP+E G+ P N+ EY+ ++G L Y +T TRPD+A V ++ M P +E + KR+ Y + G+ F KS L G+ DADW D++ +ST+G F++NG +SWCS++Q V S+TEA++V A +E V+LR LL
Sbjct: 24 VLGMVIRRDRRKGKMTISQSTYLQGILKRFGMEQCKPVSTPLEPGKHFQELPDDENPTNTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLL 218
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A6S7KSC5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KSC5_PARCT) HSP 1 Score: 153 bits (386), Expect = 2.970e-42 Identity = 80/195 (41.03%), Postives = 117/195 (60.00%), Query Frame = 3
Query: 120 VLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVE-GRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDLL 701
+LG+ ++RDR + T+TISQ Y+ VLKR+ +EC+ VSTP+E G+ N EY+ ++G L Y +T TRPD+A V +++M P +E + KRI Y + G+TF AK L G+ DADW D E +ST+G F+++G ISWCS+KQ V SSTEA+++ A +E ++LR LL
Sbjct: 64 ILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDETPANIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMALSLATQEAIWLRRLL 258
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A2P6V0U2_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0U2_9CHLO) HSP 1 Score: 153 bits (387), Expect = 5.260e-41 Identity = 86/216 (39.81%), Postives = 124/216 (57.41%), Query Frame = 3
Query: 51 ESRRVQARHRSAF*DKRL*LL*RVLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVEGRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDL 698
S ++ + +AF + L LG+ + RDR+ TI ++Q I+++L +YG D+ + STP +K++ G + Y +VGSLMY S TRPDIA V ARHM +P + ++ K + Y + PD+G+TFGA G L+ F DAD DI+ +STTG AF NGGAISW SR Q V S+TEA+++ A KE ++LR L
Sbjct: 98 SSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGPPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYISAATTIKEGLWLRKL 311
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A146H7K8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H7K8_MYCCL) HSP 1 Score: 152 bits (383), Expect = 2.530e-40 Identity = 86/223 (38.57%), Postives = 129/223 (57.85%), Query Frame = 3
Query: 51 ESRRVQARHRSAF*DKRL*LL*RVLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPV--EGRVKM-----SAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDL 698
E RV+ + F K + +++GI+V RDRS GT+T+SQ YI +L RYGF VSTP+ + KM AP S + EY+ M+G LMYA+ TRPDIAY V + ++ +P E + CKR+F Y S + G+ +G + +G EG+ DAD+ +++D KS +G A+ L G A +W S+KQ V S+TEA+F +A + ++ R+L
Sbjct: 98 EGERVRKELGTLFEMKDMGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSNLNAVSTPLVPDANTKMRQLPKDAPPAAPSVRA-EYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFRYLSGTRNYGLVYGPQRDGVVFEGYCDADYAANLDDRKSISGYAYMLAGAAFAWSSKKQTTVATSTTEAEFTSLAQAARFAMWCRNL 319
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 155 bits (392), Expect = 1.070e-39 Identity = 81/195 (41.54%), Postives = 118/195 (60.51%), Query Frame = 3
Query: 120 VLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVE-GRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDLL 701
+LG+ ++RDR + T+TISQ Y+ VLKR+ +EC+ VSTP+E G+ R N EY+ ++G L Y +T TRPD+A V +++M P +E + KRI Y + G+TF AK L G+ DADW D E +ST+G F+++G ISWCS+KQ V SSTEA+++ A +E ++LR LL
Sbjct: 1070 ILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPANIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMALSLATQEAIWLRRLL 1264
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A2P6UYV9_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=3 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV9_9CHLO) HSP 1 Score: 154 bits (390), Expect = 1.870e-39 Identity = 87/216 (40.28%), Postives = 125/216 (57.87%), Query Frame = 3
Query: 51 ESRRVQARHRSAF*DKRL*LL*RVLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVEGRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDL 698
S ++ + +AF + L LG+ + RDR+ TI ++Q I+++L +YG D+ + STP +K++ G + Y +VGSLMY S TRPDIA V ARHM +P + ++ K + Y + PD+G+TFGA S G L+ F DAD DI+ +STTG AF NGGAISW SR Q V S+TEA+++ A KE ++LR L
Sbjct: 652 SSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKL 865
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A2P6UYV5_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV5_9CHLO) HSP 1 Score: 154 bits (390), Expect = 2.040e-39 Identity = 87/216 (40.28%), Postives = 125/216 (57.87%), Query Frame = 3
Query: 51 ESRRVQARHRSAF*DKRL*LL*RVLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVEGRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDL 698
S ++ + +AF + L LG+ + RDR+ TI ++Q I+++L +YG D+ + STP +K++ G + Y +VGSLMY S TRPDIA V ARHM +P + ++ K + Y + PD+G+TFGA S G L+ F DAD DI+ +STTG AF NGGAISW SR Q V S+TEA+++ A KE ++LR L
Sbjct: 756 SSAAIKQKLMAAFEARDLDNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKL 969
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A2P6UZ08_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZ08_9CHLO) HSP 1 Score: 154 bits (390), Expect = 2.100e-39 Identity = 87/216 (40.28%), Postives = 125/216 (57.87%), Query Frame = 3
Query: 51 ESRRVQARHRSAF*DKRL*LL*RVLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVEGRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDL 698
S ++ + +AF + L LG+ + RDR+ TI ++Q I+++L +YG D+ + STP +K++ G + Y +VGSLMY S TRPDIA V ARHM +P + ++ K + Y + PD+G+TFGA S G L+ F DAD DI+ +STTG AF NGGAISW SR Q V S+TEA+++ A KE ++LR L
Sbjct: 918 SSAAIKQKLMAAFEARDLDNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKL 1131
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A2P6VRK9_9CHLO (Gag-Pol poly n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VRK9_9CHLO) HSP 1 Score: 152 bits (385), Expect = 2.810e-39 Identity = 86/216 (39.81%), Postives = 124/216 (57.41%), Query Frame = 3
Query: 51 ESRRVQARHRSAF*DKRL*LL*RVLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVEGRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDL 698
S ++ + +AF + L LG+ + RDR+ TI ++Q I+++L +YG D+ + STP +K++ G + Y +VGSLMY S TRPDIA V ARHM +P + ++ K + Y + PD+G+TFGA G L+ F DAD DI+ +STTG AF NGGAISW SR Q V S+TEA+++ A KE ++LR L
Sbjct: 330 SSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGPPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKL 543
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A2P6UZ01_9CHLO (Gag-Pol poly n=4 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZ01_9CHLO) HSP 1 Score: 154 bits (388), Expect = 3.700e-39 Identity = 87/216 (40.28%), Postives = 125/216 (57.87%), Query Frame = 3
Query: 51 ESRRVQARHRSAF*DKRL*LL*RVLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVEGRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDL 698
S ++ + +AF + L LG+ + RDR+ TI ++Q I+++L +YG D+ + STP +K++ G + Y +VGSLMY S TRPDIA V ARHM +P + ++ K + Y + PD+G+TFGA S G L+ F DAD DI+ +STTG AF NGGAISW SR Q V S+TEA+++ A KE ++LR L
Sbjct: 1103 SSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTIDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKL 1316 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22732.6056.1 >prot_H-paniculata_contig22732.6056.1 ID=prot_H-paniculata_contig22732.6056.1|Name=mRNA_H-paniculata_contig22732.6056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp MSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREback to top mRNA from alignment at H-paniculata_contig22732:1694..2472- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22732.6056.1 ID=mRNA_H-paniculata_contig22732.6056.1|Name=mRNA_H-paniculata_contig22732.6056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=779bp|location=Sequence derived from alignment at H-paniculata_contig22732:1694..2472- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22732:1694..2472- >mRNA_H-paniculata_contig22732.6056.1 ID=mRNA_H-paniculata_contig22732.6056.1|Name=mRNA_H-paniculata_contig22732.6056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig22732:1694..2472- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |