mRNA_H-paniculata_contig22732.6056.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22732.6056.1
Unique NamemRNA_H-paniculata_contig22732.6056.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 162 bits (411), Expect = 1.880e-45
Identity = 79/195 (40.51%), Postives = 120/195 (61.54%), Query Frame = 3
Query:  120 VLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVE-GRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDLL 701
            VLG+ +RRDR  G +TISQ +Y++ +LKR+G ++C+ VSTP+E G+     P      N+ EY+ ++G L Y +T TRPD+A  V   ++ M  P +E +   KR+  Y     + G+ F  KS    L G+ DADW  D++  +ST+G  F++NG  +SWCS++Q  V  S+TEA++V    A +E V+LR LL
Sbjct:   24 VLGMVIRRDRRKGKMTISQSTYLQGILKRFGMEQCKPVSTPLEPGKHFQELPDDENPTNTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLL 218          
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A6S7KSC5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KSC5_PARCT)

HSP 1 Score: 153 bits (386), Expect = 2.970e-42
Identity = 80/195 (41.03%), Postives = 117/195 (60.00%), Query Frame = 3
Query:  120 VLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVE-GRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDLL 701
            +LG+ ++RDR + T+TISQ  Y+  VLKR+  +EC+ VSTP+E G+            N  EY+ ++G L Y +T TRPD+A  V   +++M  P +E +   KRI  Y     + G+TF AK     L G+ DADW  D E  +ST+G  F+++G  ISWCS+KQ  V  SSTEA+++    A +E ++LR LL
Sbjct:   64 ILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDETPANIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMALSLATQEAIWLRRLL 258          
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A2P6V0U2_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0U2_9CHLO)

HSP 1 Score: 153 bits (387), Expect = 5.260e-41
Identity = 86/216 (39.81%), Postives = 124/216 (57.41%), Query Frame = 3
Query:   51 ESRRVQARHRSAF*DKRL*LL*RVLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVEGRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDL 698
             S  ++ +  +AF  + L      LG+ + RDR+  TI ++Q   I+++L +YG D+ +  STP    +K++  G      +  Y  +VGSLMY S  TRPDIA  V   ARHM +P  + ++  K +  Y +  PD+G+TFGA   G  L+ F DAD   DI+  +STTG AF  NGGAISW SR Q  V  S+TEA+++ A    KE ++LR L
Sbjct:   98 SSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGPPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYISAATTIKEGLWLRKL 311          
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A146H7K8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H7K8_MYCCL)

HSP 1 Score: 152 bits (383), Expect = 2.530e-40
Identity = 86/223 (38.57%), Postives = 129/223 (57.85%), Query Frame = 3
Query:   51 ESRRVQARHRSAF*DKRL*LL*RVLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPV--EGRVKM-----SAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDL 698
            E  RV+    + F  K +    +++GI+V RDRS GT+T+SQ  YI  +L RYGF     VSTP+  +   KM      AP    S  + EY+ M+G LMYA+  TRPDIAY V + ++   +P  E  + CKR+F Y S   + G+ +G + +G   EG+ DAD+  +++D KS +G A+ L G A +W S+KQ  V  S+TEA+F    +A +  ++ R+L
Sbjct:   98 EGERVRKELGTLFEMKDMGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSNLNAVSTPLVPDANTKMRQLPKDAPPAAPSVRA-EYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFRYLSGTRNYGLVYGPQRDGVVFEGYCDADYAANLDDRKSISGYAYMLAGAAFAWSSKKQTTVATSTTEAEFTSLAQAARFAMWCRNL 319          
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 155 bits (392), Expect = 1.070e-39
Identity = 81/195 (41.54%), Postives = 118/195 (60.51%), Query Frame = 3
Query:  120 VLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVE-GRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDLL 701
            +LG+ ++RDR + T+TISQ  Y+  VLKR+  +EC+ VSTP+E G+         R  N  EY+ ++G L Y +T TRPD+A  V   +++M  P +E +   KRI  Y     + G+TF AK     L G+ DADW  D E  +ST+G  F+++G  ISWCS+KQ  V  SSTEA+++    A +E ++LR LL
Sbjct: 1070 ILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPANIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMALSLATQEAIWLRRLL 1264          
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A2P6UYV9_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=3 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV9_9CHLO)

HSP 1 Score: 154 bits (390), Expect = 1.870e-39
Identity = 87/216 (40.28%), Postives = 125/216 (57.87%), Query Frame = 3
Query:   51 ESRRVQARHRSAF*DKRL*LL*RVLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVEGRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDL 698
             S  ++ +  +AF  + L      LG+ + RDR+  TI ++Q   I+++L +YG D+ +  STP    +K++  G      +  Y  +VGSLMY S  TRPDIA  V   ARHM +P  + ++  K +  Y +  PD+G+TFGA S G  L+ F DAD   DI+  +STTG AF  NGGAISW SR Q  V  S+TEA+++ A    KE ++LR L
Sbjct:  652 SSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKL 865          
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A2P6UYV5_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV5_9CHLO)

HSP 1 Score: 154 bits (390), Expect = 2.040e-39
Identity = 87/216 (40.28%), Postives = 125/216 (57.87%), Query Frame = 3
Query:   51 ESRRVQARHRSAF*DKRL*LL*RVLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVEGRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDL 698
             S  ++ +  +AF  + L      LG+ + RDR+  TI ++Q   I+++L +YG D+ +  STP    +K++  G      +  Y  +VGSLMY S  TRPDIA  V   ARHM +P  + ++  K +  Y +  PD+G+TFGA S G  L+ F DAD   DI+  +STTG AF  NGGAISW SR Q  V  S+TEA+++ A    KE ++LR L
Sbjct:  756 SSAAIKQKLMAAFEARDLDNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKL 969          
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A2P6UZ08_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZ08_9CHLO)

HSP 1 Score: 154 bits (390), Expect = 2.100e-39
Identity = 87/216 (40.28%), Postives = 125/216 (57.87%), Query Frame = 3
Query:   51 ESRRVQARHRSAF*DKRL*LL*RVLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVEGRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDL 698
             S  ++ +  +AF  + L      LG+ + RDR+  TI ++Q   I+++L +YG D+ +  STP    +K++  G      +  Y  +VGSLMY S  TRPDIA  V   ARHM +P  + ++  K +  Y +  PD+G+TFGA S G  L+ F DAD   DI+  +STTG AF  NGGAISW SR Q  V  S+TEA+++ A    KE ++LR L
Sbjct:  918 SSAAIKQKLMAAFEARDLDNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKL 1131          
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A2P6VRK9_9CHLO (Gag-Pol poly n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VRK9_9CHLO)

HSP 1 Score: 152 bits (385), Expect = 2.810e-39
Identity = 86/216 (39.81%), Postives = 124/216 (57.41%), Query Frame = 3
Query:   51 ESRRVQARHRSAF*DKRL*LL*RVLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVEGRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDL 698
             S  ++ +  +AF  + L      LG+ + RDR+  TI ++Q   I+++L +YG D+ +  STP    +K++  G      +  Y  +VGSLMY S  TRPDIA  V   ARHM +P  + ++  K +  Y +  PD+G+TFGA   G  L+ F DAD   DI+  +STTG AF  NGGAISW SR Q  V  S+TEA+++ A    KE ++LR L
Sbjct:  330 SSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGPPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKL 543          
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Match: A0A2P6UZ01_9CHLO (Gag-Pol poly n=4 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZ01_9CHLO)

HSP 1 Score: 154 bits (388), Expect = 3.700e-39
Identity = 87/216 (40.28%), Postives = 125/216 (57.87%), Query Frame = 3
Query:   51 ESRRVQARHRSAF*DKRL*LL*RVLGIKVRRDRSNGTITISQGSYIREVLKRYGFDECRGVSTPVEGRVKMSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCREDYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTTG*AFELNGGAISWCSRKQQLVRWSSTEAKFVDAGEAGKETVYLRDL 698
             S  ++ +  +AF  + L      LG+ + RDR+  TI ++Q   I+++L +YG D+ +  STP    +K++  G      +  Y  +VGSLMY S  TRPDIA  V   ARHM +P  + ++  K +  Y +  PD+G+TFGA S G  L+ F DAD   DI+  +STTG AF  NGGAISW SR Q  V  S+TEA+++ A    KE ++LR L
Sbjct: 1103 SSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTIDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKL 1316          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22732.6056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9D5L2_PARCT1.880e-4540.51Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6S7KSC5_PARCT2.970e-4241.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6V0U2_9CHLO5.260e-4139.81Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A146H7K8_MYCCL2.530e-4038.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9IUY0_PARCT1.070e-3941.54Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2P6UYV9_9CHLO1.870e-3940.28Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2P6UYV5_9CHLO2.040e-3940.28Gag-Pol poly (Fragment) n=1 Tax=Micractinium condu... [more]
A0A2P6UZ08_9CHLO2.100e-3940.28Gag-Pol poly (Fragment) n=1 Tax=Micractinium condu... [more]
A0A2P6VRK9_9CHLO2.810e-3939.81Gag-Pol poly n=2 Tax=Micractinium conductrix TaxID... [more]
A0A2P6UZ01_9CHLO3.700e-3940.28Gag-Pol poly n=4 Tax=Micractinium conductrix TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22732contigH-paniculata_contig22732:1694..2472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog67593.Physo141588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size701
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22732.6056.1prot_H-paniculata_contig22732.6056.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22732 1829..2212 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929632.348268-UTR-H-paniculata_contig22732:1693..18281622929632.348268-UTR-H-paniculata_contig22732:1693..1828Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22732 1694..1828 -
1691480944.0767272-UTR-H-paniculata_contig22732:1693..18281691480944.0767272-UTR-H-paniculata_contig22732:1693..1828Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22732 1694..1828 -
1622929632.4226828-UTR-H-paniculata_contig22732:2212..24721622929632.4226828-UTR-H-paniculata_contig22732:2212..2472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22732 2213..2472 -
1691480944.1087925-UTR-H-paniculata_contig22732:2212..24721691480944.1087925-UTR-H-paniculata_contig22732:2212..2472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22732 2213..2472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929632.3846178-CDS-H-paniculata_contig22732:1828..21201622929632.3846178-CDS-H-paniculata_contig22732:1828..2120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22732 1829..2120 -
1691480944.0903208-CDS-H-paniculata_contig22732:1828..21201691480944.0903208-CDS-H-paniculata_contig22732:1828..2120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22732 1829..2120 -
1622929632.4028578-CDS-H-paniculata_contig22732:2198..22121622929632.4028578-CDS-H-paniculata_contig22732:2198..2212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22732 2199..2212 -
1691480944.099665-CDS-H-paniculata_contig22732:2198..22121691480944.099665-CDS-H-paniculata_contig22732:2198..2212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22732 2199..2212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22732.6056.1

>prot_H-paniculata_contig22732.6056.1 ID=prot_H-paniculata_contig22732.6056.1|Name=mRNA_H-paniculata_contig22732.6056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MSAPGRGRSGNSTEYRGMVGSLMYASTGTRPDIAYTVHQAARHMEDPCRE
DYSTCKRIFCYFSTVPDLGMTFGAKSNGHGLEGFGDADWPEDIEDLKSTT
G*
back to top

mRNA from alignment at H-paniculata_contig22732:1694..2472-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22732.6056.1 ID=mRNA_H-paniculata_contig22732.6056.1|Name=mRNA_H-paniculata_contig22732.6056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=779bp|location=Sequence derived from alignment at H-paniculata_contig22732:1694..2472- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCTGGTGGCCGTCTATGTTGACGACCTGGTCATTGCTGGACGTCGTGA GAAAGTAGACGAGTTCAAGCACGACATAGGTCGGCGTTTTAGGATAAAAG ACTCTGACTGCTCTAGCGCGTGTTGGGAATAAAAGTACGACGTGACCGCT CTAATGGTACCATTACCATCTCGCAGGGTAGCTACATCCGCGAGGTACTG AAAAGATACGGTTTTGACGAGTGTCGAGGCGTGTCCACCCCTGTAGAGGG AAGAGTGAAGATGTCGGCACCCGGGTCGGCCGACAAGCCCCCCGAACCAA AACCACTTCGGGCTGTACTGTCGGACATGGGCGCAGGACTACAAGAAATC AGCAGAGGGAGAAGTGGCAATTCAACTGAATACAGAGGCATGGTAGGATC ACTCATGTACGCCTCGACAGGAACTAGACCTGATATAGCATACACGGTAC ACCAAGCAGCACGTCATATGGAGGACCCATGTCGGGAAGACTACAGTACA TGCAAGCGCATTTTTTGTTATTTCAGTACTGTCCCTGACCTCGGCATGAC GTTCGGCGCTAAGAGTAATGGTCACGGCCTAGAAGGATTTGGTGATGCCG ATTGGCCGGAAGATATCGAGGACCTAAAGTCCACAACAGGATAAGCATTT GAGCTAAACGGCGGTGCGATAAGTTGGTGCTCTAGAAAGCAACAGTTAGT CAGGTGGTCCAGTACAGAGGCCAAGTTCGTTGATGCAGGAGAAGCGGGAA AGGAGACGGTATATCTTAGGGATTTACTA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig22732:1694..2472-

>mRNA_H-paniculata_contig22732.6056.1 ID=mRNA_H-paniculata_contig22732.6056.1|Name=mRNA_H-paniculata_contig22732.6056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig22732:1694..2472- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGCACCCGGATGTCGGCACCCGGCAGAGGGAGAAGTGGCAATTCA
ACTGAATACAGAGGCATGGTAGGATCACTCATGTACGCCTCGACAGGAAC
TAGACCTGATATAGCATACACGGTACACCAAGCAGCACGTCATATGGAGG
ACCCATGTCGGGAAGACTACAGTACATGCAAGCGCATTTTTTGTTATTTC
AGTACTGTCCCTGACCTCGGCATGACGTTCGGCGCTAAGAGTAATGGTCA
CGGCCTAGAAGGATTTGGTGATGCCGATTGGCCGGAAGATATCGAGGACC
TAAAGTCCACAACAGGATAACAGAGGGAGAAGTGGCAATTCAACTGAATA
CAGAGGCATGGTAGGATCACTCATGTACGCCTCGACAGGAACTAGACCTG
ATATAGCATACACGGTACACCAAGCAGCACGTCATATGGAGGACCCATGT
CGGGAAGACTACAGTACATGCAAGCGCATTTTTTGTTATTTCAGTACTGT
CCCTGACCTCGGCATGACGTTCGGCGCTAAGAGTAATGGTCACGGCCTAG
AAGGATTTGGTGATGCCGATTGGCCGGAAGATATCGAGGACCTAAAGTCC
ACAACAGGATAA
back to top