prot_H-paniculata_contig22724.6053.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig22724.6053.1
Unique Nameprot_H-paniculata_contig22724.6053.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length47
Homology
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BLAST of mRNA_H-paniculata_contig22724.6053.1 vs. uniprot
Match: A0A6H5KJ20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ20_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.360e-14
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 0 
Query:    1 MSRAGASVGAVLLCLMGGIMNCTWPLFCKPESPKTLRVVSAGGWEW 46
            M+ AG S+ AVL  L+GG+MN TWPLFCKPESP+ +RV ++ GW+W
Sbjct:    1 MAGAGRSIAAVLFSLIGGVMNATWPLFCKPESPELIRVATSDGWQW 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22724.6053.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ20_9PHAE4.360e-1460.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..46
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..28
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22724contigH-paniculata_contig22724:3146..3899 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22724.6053.1mRNA_H-paniculata_contig22724.6053.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig22724 3001..3899 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig22724.6053.1 ID=prot_H-paniculata_contig22724.6053.1|Name=mRNA_H-paniculata_contig22724.6053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
MSRAGASVGAVLLCLMGGIMNCTWPLFCKPESPKTLRVVSAGGWEW*
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