mRNA_H-paniculata_contig22724.6053.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22724.6053.1
Unique NamemRNA_H-paniculata_contig22724.6053.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22724.6053.1 vs. uniprot
Match: A0A6H5KJ20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ20_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.220e-13
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 2 
Query:  146 MSRAGASVGAVLLCLMGGIMNCTWPLFCKPESPKTLRVVSAGGWEW 283
            M+ AG S+ AVL  L+GG+MN TWPLFCKPESP+ +RV ++ GW+W
Sbjct:    1 MAGAGRSIAAVLFSLIGGVMNATWPLFCKPESPELIRVATSDGWQW 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22724.6053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ20_9PHAE2.220e-1360.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22724contigH-paniculata_contig22724:3001..3899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size286
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22724.6053.1prot_H-paniculata_contig22724.6053.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22724 3146..3899 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929632.0942962-UTR-H-paniculata_contig22724:3000..31451622929632.0942962-UTR-H-paniculata_contig22724:3000..3145Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22724 3001..3145 +
1691480943.963289-UTR-H-paniculata_contig22724:3000..31451691480943.963289-UTR-H-paniculata_contig22724:3000..3145Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22724 3001..3145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929632.1089659-CDS-H-paniculata_contig22724:3145..32161622929632.1089659-CDS-H-paniculata_contig22724:3145..3216Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22724 3146..3216 +
1691480943.9784727-CDS-H-paniculata_contig22724:3145..32161691480943.9784727-CDS-H-paniculata_contig22724:3145..3216Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22724 3146..3216 +
1622929632.1210794-CDS-H-paniculata_contig22724:3829..38991622929632.1210794-CDS-H-paniculata_contig22724:3829..3899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22724 3830..3899 +
1691480943.991855-CDS-H-paniculata_contig22724:3829..38991691480943.991855-CDS-H-paniculata_contig22724:3829..3899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22724 3830..3899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22724.6053.1

>prot_H-paniculata_contig22724.6053.1 ID=prot_H-paniculata_contig22724.6053.1|Name=mRNA_H-paniculata_contig22724.6053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
MSRAGASVGAVLLCLMGGIMNCTWPLFCKPESPKTLRVVSAGGWEW*
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mRNA from alignment at H-paniculata_contig22724:3001..3899+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22724.6053.1 ID=mRNA_H-paniculata_contig22724.6053.1|Name=mRNA_H-paniculata_contig22724.6053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=899bp|location=Sequence derived from alignment at H-paniculata_contig22724:3001..3899+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAATTGGAGAAATCATGTGTCTTAGAGAACATAACAATATTACAGCCAGC
CAGTAGTCATTAGGCTGAAACGGTGGGGCCTGGGGGAGATTGCGAGAGTG
GTGTCCTGGGCTTGGAGAGGATTGTAGGTGTAGAAGAAAGAAGCTATGAG
TCGTGCCGGAGCGTCAGTCGGAGCTGTCCTGCTGTGCCTTATGGGCGGGA
TCATGAATTGTACTTGGTAAGTGACGTAAACATGCCGCGTATTGTATTTC
TTGCAGCCCTATCTCGATCAACGCGCGCTGGAGGTTCGACTGAAACATGG
ATAAGAGGGGGAGGAGGGGGGGGGGGGGGGAGCCTAAGATCGACCCTGGC
TATCGACATTCATTTCTAATCCAGCCATCCATGATACATATAGTACAGCA
GAGTAGAGTCAGTACAGACGGCACATACAAGATAGACAGTCAGACAGTAG
AAAGAACCCCCGATGCTGTGATGCTTTGTAACTTTCCATGATTTGTCATA
TTCAAACCCATCCTTTGTGAGTGTGAGTTTGACGAGCATCCTATACAAGT
ACAATATTCAGCTTTGACGTACACTTCGCCCCCGCTTGTGCTTCACCCCT
CCAGATGGATCCTCCCCTATATCGAAGTGGCATCTTGGTAAAGCTACCTA
TGAACCCTGAAAAACCCACAAAGATGGTACAACGAATGACCCGGGCGGGG
ACTCTCATGAGAACAGACTACTGACGGGATTATTAATTGGACTTGAAATA
AACAGTAGATAAGCCGAATTGATGTCACCGCGCACCACATCCTGACACAC
TGGATCACTTGCTGCTGTGCCTCGTACAGGCCACTATTCTGCAAGCCAGA
GTCACCCAAGACTCTGAGAGTTGTCTCGGCTGGAGGTTGGGAATGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22724:3001..3899+

>mRNA_H-paniculata_contig22724.6053.1 ID=mRNA_H-paniculata_contig22724.6053.1|Name=mRNA_H-paniculata_contig22724.6053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig22724:3001..3899+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTCGTGCCGGAGCGTCAGTCGGAGCTGTCCTGCTGTGCCTTATGGG
CGGGATCATGAATTGTACTTGATGAGTCGTGCCGGAGCGTCAGTCGGAGC
TGTCCTGCTGTGCCTTATGGGCGGGATCATGAATTGTACTTGGCCACTAT
TCTGCAAGCCAGAGTCACCCAAGACTCTGAGAGTTGTCTCGGCTGGAGGT
TGGGAATGGTGAGCCACTATTCTGCAAGCCAGAGTCACCCAAGACTCTGA
GAGTTGTCTCGGCTGGAGGTTGGGAATGGTGA
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