mRNA_H-paniculata_contig2272.6052.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2272.6052.1
Unique NamemRNA_H-paniculata_contig2272.6052.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2272.6052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2272contigH-paniculata_contig2272:1821..2985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_002120.1
Exons2
Model size221
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929632.0200062-CDS-H-paniculata_contig2272:1821..19021622929632.0200062-CDS-H-paniculata_contig2272:1821..1902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2272 1822..1902 -
1691480943.9409635-CDS-H-paniculata_contig2272:1821..19021691480943.9409635-CDS-H-paniculata_contig2272:1821..1902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2272 1822..1902 -
1622929632.0419474-CDS-H-paniculata_contig2272:2847..29851622929632.0419474-CDS-H-paniculata_contig2272:2847..2985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2272 2848..2985 -
1691480943.95274-CDS-H-paniculata_contig2272:2847..29851691480943.95274-CDS-H-paniculata_contig2272:2847..2985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2272 2848..2985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2272.6052.1prot_H-paniculata_contig2272.6052.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2272 1822..2985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2272.6052.1

>prot_H-paniculata_contig2272.6052.1 ID=prot_H-paniculata_contig2272.6052.1|Name=mRNA_H-paniculata_contig2272.6052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
AGGTRDNSCSGGAMSASGTLELNRRCFSCCNVVLQMEASIDGERRMLMQH
PKFAQDQAFKDIMAKLSKQEYCD
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mRNA from alignment at H-paniculata_contig2272:1821..2985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2272.6052.1 ID=mRNA_H-paniculata_contig2272.6052.1|Name=mRNA_H-paniculata_contig2272.6052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1165bp|location=Sequence derived from alignment at H-paniculata_contig2272:1821..2985- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGGGGGGACAAGGGATAACAGCTGCTCGGGTGGAGCGATGAGCGCGAG
CGGCACCCTGGAGTTAAACCGGCGGTGCTTCTCGTGCTGTAACGTAGTAC
TGCAGATGGAGGCCTCGATCGACGGCGAGCGCAGAATGGTGAGCTCTCCT
GGTGCTCAAAGGTTCATGAGAGTTATAAACTTGATAGGACAGTTACAGTA
TTTCAATGTTTGTGTGAACTGGCGGTACGTTGCGATGTTGGCATTGGCAT
GCATCCGGTTGTGGCAAGGTCATCCATGATAGTTTCCCCACCCGAGAGTA
GCTAACTGTACTGTTCACACGTGGAGTACAGTCGCTCACAAGCCTGAAGC
ACCGTTGGGCTAAACCTCCCGTTGATTGGGCATTCATGAACACCTTGAAC
GACTTGTGGAAGTCATTCCTATCGCAAATTTTAGTCGGTGGGCCTCAATT
TCAAATCTGATGTCATTCATCACATACGCACCGTACGTTATAGCCACGGG
TACAGCCTTGAAATACACGGTTTGTCCTCACATTACTCTTTTTTAATAGT
CACTAACCAATTACCCACACACAACGGCTCGCTACAGACTGCAGACAGTC
AGTCCACATGTCTCGCTACCCTCTCACAGAGGTAACATGTCCATCAAGAT
TCGATTTTAGAATTCACTTGAATACAGTTCGTAAAATCTTCTTACGAATC
TACTGCACCGCATGATCAGAAATACAACTGTGTTTCACATGTTGCTTCGA
AGTTCCAAATTTATTTTGTTCAAAGATCCTCGAATTGAAGTCACTGGAAC
AGCACCCGGAGCCATTGATATGTCTGCACAACGAAGGGAGACGGGTATCG
TAACCCGACCACGCCTGTTACCGTTCTGCCTGTAAGTAATTACCGCTGCC
ACGTACCGTATTTCGTATTTCACTCTCCAAAATTATGAAAAGAGCTGTAA
TGAACAAGTCTGAGTTTATTAGAGACTGTTGCTGACTATTTGGGTCTGCT
CTCTGTCATCTGTCTGTATGCACGCCTCTGGATGCTAAACATGATGTCAT
TGTGTGCTTGCATGTGCTGGATATGTACGACAGTTGATGCAGCACCCTAA
GTTCGCGCAGGACCAGGCATTCAAGGACATCATGGCCAAATTATCCAAGC
AGGAGTATTGCGACA
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Coding sequence (CDS) from alignment at H-paniculata_contig2272:1821..2985-

>mRNA_H-paniculata_contig2272.6052.1 ID=mRNA_H-paniculata_contig2272.6052.1|Name=mRNA_H-paniculata_contig2272.6052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig2272:1821..2985- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGGGGGGACAAGGGATAACAGCTGCTCGGGTGGAGCGATGAGCGCGAG
CGGCACCCTGGAGTTAAACCGGCGGTGCTTCTCGTGCTGTAACGTAGTAC
TGCAGATGGAGGCCTCGATCGACGGCGAGCGCAGAATGGCTGGGGGGACA
AGGGATAACAGCTGCTCGGGTGGAGCGATGAGCGCGAGCGGCACCCTGGA
GTTAAACCGGCGGTGCTTCTCGTGCTGTAACGTAGTACTGCAGATGGAGG
CCTCGATCGACGGCGAGCGCAGAATGTTGATGCAGCACCCTAAGTTCGCG
CAGGACCAGGCATTCAAGGACATCATGGCCAAATTATCCAAGCAGGAGTA
TTGCGACTTGATGCAGCACCCTAAGTTCGCGCAGGACCAGGCATTCAAGG
ACATCATGGCCAAATTATCCAAGCAGGAGTATTGCGAC
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