mRNA_H-paniculata_contig22711.6051.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22711.6051.1 vs. uniprot
Match: A0A6H5KQW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQW2_9PHAE) HSP 1 Score: 247 bits (630), Expect = 1.560e-65 Identity = 331/790 (41.90%), Postives = 404/790 (51.14%), Query Frame = 1
Query: 4 GTVQEREEREQQCRDKVDRGLMRMERLKEENAFAAAAAV-----VSPSMSFGGSSIRPPPSRRIQAPDLASYKYQVEQQSLCRQIEDLQWELQNLKRRLEERERXXXXARTDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARESAA-------KEGGDHRAVLETEVRGREEAKAAVAAVEAAARDREATLTVALEKSIEELERXXXXXXXRRELSPNCRGMDKRSPEDTINIEEVQNRAKELESVKCSLAARDVELAAIADATAGFARQEVREPRGRGSGVGQVYGGGGPALRGALAAATDARCARRLVADLEEECSSLKDASTRARGDISRLRGELKVVK--EEAVGAAEXXXXXXXXXTSR---------------NVALSSSASAVGEQMGKTRDRALAAEEALEKALTGAQQAWRLMTSCLITESGDDDIDADASISSTWYRQPRPA------IW-HPG--VDPYLWELVAGAEALTSAHRRRGCSLRRAQVTVRAKTACAREARRREXXXXXXXXXXXSRLRDAVAALDEC----EQHQ------------DGGGSNEGRRHGGDESNGRFCGPSPGQQEHLRQIRREVDRLEGQNQHLRLSLVGDRL-----MRE--RSTSRGGGGRKAPPQRTFFPK---LGSDTSADPG------VGRWECRPGERLSGSEGAVSLGSRSPTRSWNAGAKARCGAGQWSPVEDVDFAGREGPQGAASDTGGDRGFVESHATGLYDR------TPQDDGSGGTVVPGW 2145
G+V+EREEREQQCRD+VD GL+RMERLK SP +S S+ P R I A ++ + E Q L RQ+EDLQW+ + LKRR+EER+ AR +A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R+ AA + + R+ LE E GR+ A AA EA ARDR A L+ +L + E + E + K+ + T+ E+V RA+E+ES++C+LAARDVEL +I DATAGF V G+ GG ALRGALAAAT+AR A RLVA+LEEECSSLK D RLR L+ V+ E+ AA XXXXXXXXX N ++A + M K R AE+AL+KAL GAQ+AW +++SCL ++ G +D D ST P +W HP VDP L L+ G EAL +A+RRRG + R+A V RAK CAREARRRE XXXXXXXX RL +A+ ALD+C EQ Q DG G G GD GR S Q+EHLRQIR EVDRLEGQN+ LR SL G + M E R T G G P QR FP G D + + G RWE G LSG + S S SP RSW A + + SP R G G + + PQDDGSGGT+VP W
Sbjct: 1141 GSVEEREEREQQCRDQVDLGLLRMERLKXXXXXXXXXXXXXXXXASPPVS---SAWLPGAPRPISA-QADPWRGRAELQRLRRQLEDLQWDTRTLKRRIEERDNQVRDARAEADGLNSRSRTAERELAGAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRDRAANAAAAAERSAQEQRSRLEQE--GRDRLSVATAA-EARARDRVAELSASLGAATAERDALLLSAKAAGEEATLAAAA-KQGFDPTV--EDVTARAREVESLRCALAARDVELESIIDATAGFGHHAV--------GL-----GGSGALRGALAAATEARRAGRLVAELEEECSSLKAKVKEEHADAHRLREALEQVRLAEQRATAAXXXXXXXXXXXXXXXXXXXXXXQDTGGGNDREGGHSAAEAQAMSK---RVQEAEDALQKALAGAQRAWGVVSSCL-SDDGSSRVDNDDGAVSTSTPPALPPAMASFLLWQHPASPVDPSLGALICGVEALAAAYRRRGHAARQATVAARAKAVCAREARRREEAEXXXXXXXXGRLEEAMIALDDCRRCHEQQQQQQTCWGVGRAADGPGPGGGMP--GDGGGGRSF-LSHEQEEHLRQIRSEVDRLEGQNRTLRRSLEGGSVGLIGKMTELYRETGDGNHG-DLPTQRLLFPPSLATGGDNTEEGGPRANLRASRWERAEG--LSGRGASASTPSPSPGRSWTAPSNIHA---RGSPCY------RRGGDGXXXXXXXXXXXXXXXXARVLEEFASCCAAPQDDGSGGTLVPVW 1888
BLAST of mRNA_H-paniculata_contig22711.6051.1 vs. uniprot
Match: D8LQ82_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ82_ECTSI) HSP 1 Score: 221 bits (562), Expect = 8.770e-57 Identity = 276/703 (39.26%), Postives = 345/703 (49.08%), Query Frame = 1
Query: 211 QVEQQSLCRQIEDLQWELQNLKRRLEERERXXXXARTDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARESAA-------KEGGDHRAVLETEVRGREEAKAAVAAVEAAARDREATLTVALEKSIEELERXXXXXXXRRELSPNCRGMDKRSPEDTINIEEVQNRAKELESVKCSLAARDVELAAIADATAGFARQEVREPRGRGSGVGQVYGGGGPALRGALAAATDARCARRLVADLEEECSSLKDASTRARGDISRLRGELKVVKEEAVGAAEXXXXXXXXXTSRNVALSSSASAVGEQMGKTRDRALAAEEALEKALTGAQQAWRLMTSCLITES--GDDDIDADASISSTWYRQPRPA---IW-HPG--VDPYLWELVAGAEALTSAHRRRGCSLRRAQVTVRAKTACAREARRREXXXXXXXXXXXSRLRDAVAALDECEQ-HQD----------------------GGGSNEGRRHGGDESNGRFCGPSPGQQEHLRQIRREVDRLEGQNQHLRLSLVGDRL-----MRERSTSRGGGGR-KAPPQRTFFPK---LGSDTSADPG------VGRWECRPGERLSGSEGAVSLGSRSPTRSWNAGAKARCGAGQWSPVEDVDFAGREGPQGAASDTGGDRGFVESHATGLYD-----RTPQDDGSGGTVVPGW 2145
Q E Q L RQ+EDLQW+ + LKRR+EER+ AR +A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R+ AA + G+ R+ LE E R R +A A EA ARDR L+ +L + E + E + + +E+ RA+E+ES++C+LAARDVE+ +I DATAGF+ V G+ GG ALRGALAAAT+AR A RLVA+LEEECSSLK R + RLR L E+ G + +VA A A+ +++ +T E+AL+KAL G Q+AW +++SCL + G DD D S ++ P A +W HP VDP+L L+ G EAL +A+RRRG + RRA V RAK CAREARRRE RL +A+ ALD+C + H+ GGG GD GR S Q+EHLRQIR EVDRLEGQNQ LR SL G + M E GGG R P QR FP G + + + G GRWE G L G + S S SP RSW A + + SP R G A L + PQDDGSGGT+VPGW
Sbjct: 1107 QAELQRLRRQLEDLQWDTRTLKRRIEERDNQVRDARAEADGLKARSRTAERELGGAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRDRAASAAAAAERSAGEQRSRLEQEGRDR---LSAAAXXEARARDRVTELSASLRAATAERDALLLSAKAAGEEAALAAAA---KQDFDPAVEDGTARAREVESLRCALAARDVEVESIIDATAGFSHHTV--------GL-----GGSGALRGALAAATEARRAGRLVAELEEECSSLKAKVKEERAESHRLREAL----EQDTGGGKDREGG------HSVA---EAQAMSKRVQET-------EDALQKALAGVQRAWGVVSSCLSDDDSRGVDDDDGAVSTATPPALPPAMASFLLWQHPASPVDPFLGALICGVEALAAAYRRRGHAARRATVAARAKAVCAREARRREEAAIRAREDAEGRLDEAMIALDDCRRCHEQXXXXXXXXXCWGVGRAADVPGPGGGMP------GDGGGGRSL-LSHEQEEHLRQIRSEVDRLEGQNQTLRRSLEGGSVRFIGKMTELYRETGGGNRGDLPTQRLLFPPSSATGGNNTEEGGPRANLRAGRWERADG--LCGRGASASTPSPSPGRSWTAPSNIHA---RGSPCYR-----RGGDXXXXXXXXXXXXXXXXXARVLKEFAGCCAAPQDDGSGGTLVPGW 1753 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22711.6051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22711.6051.1 >prot_H-paniculata_contig22711.6051.1 ID=prot_H-paniculata_contig22711.6051.1|Name=mRNA_H-paniculata_contig22711.6051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=720bp QGTVQEREEREQQCRDKVDRGLMRMERLKEENAFAAAAAVVSPSMSFGGSback to top mRNA from alignment at H-paniculata_contig22711:508..3502- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22711.6051.1 ID=mRNA_H-paniculata_contig22711.6051.1|Name=mRNA_H-paniculata_contig22711.6051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2995bp|location=Sequence derived from alignment at H-paniculata_contig22711:508..3502- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22711:508..3502- >mRNA_H-paniculata_contig22711.6051.1 ID=mRNA_H-paniculata_contig22711.6051.1|Name=mRNA_H-paniculata_contig22711.6051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4320bp|location=Sequence derived from alignment at H-paniculata_contig22711:508..3502- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |