mRNA_H-paniculata_contig22709.6048.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22709.6048.1
Unique NamemRNA_H-paniculata_contig22709.6048.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22709.6048.1 vs. uniprot
Match: D8LEK6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEK6_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 2.470e-50
Identity = 80/98 (81.63%), Postives = 91/98 (92.86%), Query Frame = 1
Query:   22 FLTYNFLQEKIPKQDTTVKKLSRNAVIGFCSSVVSDTCSNSIRVIKVYKQSHTEGVTYVQAVKDVVKTDGVSGLLGRGLKTKIVANGMQGLMFSVLWK 315
            F TYN+LQE+IPKQD+ +KKL+RN +IGFCSSVVSDTCSNSIRV+KVYKQSHTEGVTYVQAV+DV+  DG+ GL GRGLKTKI+ANGMQGLMFSVLWK
Sbjct:  184 FFTYNYLQERIPKQDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQSHTEGVTYVQAVRDVIAKDGLVGLFGRGLKTKIMANGMQGLMFSVLWK 281          
BLAST of mRNA_H-paniculata_contig22709.6048.1 vs. uniprot
Match: A0A835ZPC0_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPC0_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.490e-47
Identity = 79/112 (70.54%), Postives = 93/112 (83.04%), Query Frame = 1
Query:    1 FFGGRARFLTYNFLQEKIPKQDTTVKKLSRNAVIGFCSSVVSDTCSNSIRVIKVYKQSHTEGVTYVQAVKDVVKTDGVSGLLGRGLKTKIVANGMQGLMFSVLWKAIEERIN 336
            F G    F TYN+LQE+IPK+  T++KL+RNAVIGF SS+VSDTCSNSIRVIKVYKQS TE VTY+QA K+V+ +DGV GL GRGLKTK++ANGMQGLMFSV WK  EE+ N
Sbjct:  177 FVGHYPWFFTYNYLQERIPKETATLRKLARNAVIGFASSLVSDTCSNSIRVIKVYKQSSTEPVTYLQAAKNVIASDGVLGLFGRGLKTKLIANGMQGLMFSVFWKFFEEQFN 288          
BLAST of mRNA_H-paniculata_contig22709.6048.1 vs. uniprot
Match: A0A7S4INV7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4INV7_9STRA)

HSP 1 Score: 149 bits (377), Expect = 4.030e-44
Identity = 70/109 (64.22%), Postives = 87/109 (79.82%), Query Frame = 1
Query:    1 FFGGRARFLTYNFLQEKIPKQDTTVKKLSRNAVIGFCSSVVSDTCSNSIRVIKVYKQSHTEGVTYVQAVKDVVKTDGVSGLLGRGLKTKIVANGMQGLMFSVLWKAIEE 327
            F G    F TYN L EKIPKQDTT+ +L R AV+GFCSS VSDTCSNS+RV+KVYKQSH E ++Y Q V+ V+K  GV+GL+ RGL+TKI+ANGMQG++FS+LWK  E+
Sbjct:   35 FVGHYPWFATYNLLSEKIPKQDTTLGELGRRAVLGFCSSAVSDTCSNSVRVVKVYKQSHPENLSYPQVVRTVIKESGVTGLMFRGLETKILANGMQGILFSILWKQFED 143          
BLAST of mRNA_H-paniculata_contig22709.6048.1 vs. uniprot
Match: A0A7S2V2G3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G3_9STRA)

HSP 1 Score: 154 bits (388), Expect = 4.810e-44
Identity = 73/114 (64.04%), Postives = 90/114 (78.95%), Query Frame = 1
Query:    1 FFGGRARFLTYNFLQEKIPKQDTTVKKLSRNAVIGFCSSVVSDTCSNSIRVIKVYKQSHTEGVTYVQAVKDVVKTDGVSGLLGRGLKTKIVANGMQGLMFSVLWKAIEERINKD 342
            F G    F T+N L  +IPK D   KKL RNA IGFC+S++SDTCSNSIRV+KVY+Q+H E V+YV AVK V+  DG++GL GRGLKTKI+ANGMQG+MFSV+W+ IE+ INKD
Sbjct:  177 FVGHYPWFTTFNILNARIPKYDDLPKKLMRNAFIGFCASLISDTCSNSIRVVKVYRQTHPEKVSYVNAVKGVIAEDGLAGLFGRGLKTKILANGMQGIMFSVMWRMIEDMINKD 290          
BLAST of mRNA_H-paniculata_contig22709.6048.1 vs. uniprot
Match: A0A482RTX4_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTX4_9ARCH)

HSP 1 Score: 148 bits (374), Expect = 6.620e-44
Identity = 73/113 (64.60%), Postives = 89/113 (78.76%), Query Frame = 1
Query:    1 FFGGRARFLTYNFLQEKIPKQDTTVKKLSRNAVIGFCSSVVSDTCSNSIRVIKVYKQSHTEGVTYVQAVKDVVKTDGVSGLLGRGLKTKIVANGMQGLMFSVLWKAIEERINK 339
            F G    F  YN+L   +PK D T+KKL R+A+IGFCSS VSDT SNSIRV+KVYKQ+ TE +TY + +K V+K DGV GL+GRGLKTKI+ANG+QGLMFSVLWKAI+E+  K
Sbjct:   13 FVGHYPWFFVYNYLSATLPKYDDTLKKLGRSALIGFCSSAVSDTVSNSIRVLKVYKQASTEPLTYPEVLKRVLKEDGVIGLMGRGLKTKIIANGLQGLMFSVLWKAIDEQFFK 125          
BLAST of mRNA_H-paniculata_contig22709.6048.1 vs. uniprot
Match: A0A7S3HQJ3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQJ3_9STRA)

HSP 1 Score: 151 bits (382), Expect = 4.690e-43
Identity = 74/113 (65.49%), Postives = 90/113 (79.65%), Query Frame = 1
Query:    1 FFGGRARFLTYNFLQEKIPKQDTTVKKLSRNAVIGFCSSVVSDTCSNSIRVIKVYKQSHTEGVTYVQAVKDVVKTDGVSGLLGRGLKTKIVANGMQGLMFSVLWKAIEERINK 339
            F G    F  YN+L E +P+ D T KKL+R+AVIGFC+S VSDTCSNSIRVIKVYKQS+TE ++Y +A+  V+K DG+ GL GRGLKTKI+ANGMQGLMFSVLWK I+E+  K
Sbjct:  179 FVGHYPWFFVYNYLNEVLPRYDETPKKLARSAVIGFCASAVSDTCSNSIRVIKVYKQSNTEKISYSEALGRVIKEDGLGGLFGRGLKTKILANGMQGLMFSVLWKLIDEKFFK 291          
BLAST of mRNA_H-paniculata_contig22709.6048.1 vs. uniprot
Match: A0A812XG79_SYMMI (PET8 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XG79_SYMMI)

HSP 1 Score: 147 bits (370), Expect = 1.260e-42
Identity = 71/109 (65.14%), Postives = 88/109 (80.73%), Query Frame = 1
Query:    1 FFGGRARFLTYNFLQEKIPKQDTTVKKLSRNAVIGFCSSVVSDTCSNSIRVIKVYKQSHTEGVTYVQAVKDVVKTDGVSGLLGRGLKTKIVANGMQGLMFSVLWKAIEE 327
            F G    FLTYNFL E +P+ +  ++ L R+A+IGFC+S VSDTCSNSIRV+KVYKQ++ E +TY QA+K V+  DGV GLLGRGLKTKI+ANGMQGLMFSVLWK I++
Sbjct:   68 FVGHYPWFLTYNFLNEHLPRYEDKLQTLGRSALIGFCASAVSDTCSNSIRVVKVYKQANEEAITYPQALKRVLAEDGVMGLLGRGLKTKILANGMQGLMFSVLWKYIDD 176          
BLAST of mRNA_H-paniculata_contig22709.6048.1 vs. uniprot
Match: A0A6U3NU43_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NU43_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.420e-42
Identity = 70/109 (64.22%), Postives = 87/109 (79.82%), Query Frame = 1
Query:    1 FFGGRARFLTYNFLQEKIPKQDTTVKKLSRNAVIGFCSSVVSDTCSNSIRVIKVYKQSHTEGVTYVQAVKDVVKTDGVSGLLGRGLKTKIVANGMQGLMFSVLWKAIEE 327
            F G    F TYNFL EKIPKQDT + +L R A++GFCSS VSDTCSNSIRVIKVYKQS+ + ++Y Q VK+V+K  G+ GL+ RGL+TKI+ANGMQG++FS+LWK  EE
Sbjct:  174 FVGHYPWFFTYNFLSEKIPKQDTQMGELGRRAILGFCSSAVSDTCSNSIRVIKVYKQSYPDAISYPQVVKNVIKESGIKGLMFRGLETKILANGMQGILFSILWKQFEE 282          
BLAST of mRNA_H-paniculata_contig22709.6048.1 vs. uniprot
Match: A0A7S4IP31_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IP31_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.220e-42
Identity = 70/109 (64.22%), Postives = 87/109 (79.82%), Query Frame = 1
Query:    1 FFGGRARFLTYNFLQEKIPKQDTTVKKLSRNAVIGFCSSVVSDTCSNSIRVIKVYKQSHTEGVTYVQAVKDVVKTDGVSGLLGRGLKTKIVANGMQGLMFSVLWKAIEE 327
            F G    F TYN L EKIPKQDTT+ +L R AV+GFCSS VSDTCSNS+RV+KVYKQSH E ++Y Q V+ V+K  GV+GL+ RGL+TKI+ANGMQG++FS+LWK  E+
Sbjct:  177 FVGHYPWFATYNLLSEKIPKQDTTLGELGRRAVLGFCSSAVSDTCSNSVRVVKVYKQSHPENLSYPQVVRTVIKESGVTGLMFRGLETKILANGMQGILFSILWKQFED 285          
BLAST of mRNA_H-paniculata_contig22709.6048.1 vs. uniprot
Match: A0A1Z5KKU9_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KKU9_FISSO)

HSP 1 Score: 149 bits (376), Expect = 3.920e-42
Identity = 70/109 (64.22%), Postives = 87/109 (79.82%), Query Frame = 1
Query:    1 FFGGRARFLTYNFLQEKIPKQDTTVKKLSRNAVIGFCSSVVSDTCSNSIRVIKVYKQSHTEGVTYVQAVKDVVKTDGVSGLLGRGLKTKIVANGMQGLMFSVLWKAIEE 327
            F G    F TYN+L EKIPKQDT + +L R A++GFCSS +SDTCSNSIRV+KVYKQSH E +TYVQ VK+V++  GV GL  RGL+TKI+ANG+QG++FS+LWK  EE
Sbjct:  186 FVGHYPWFATYNYLSEKIPKQDTQLAELGRRALLGFCSSAISDTCSNSIRVVKVYKQSHPEQLTYVQVVKNVLQESGVQGLFFRGLETKILANGLQGILFSILWKQFEE 294          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22709.6048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEK6_ECTSI2.470e-5081.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZPC0_9STRA2.490e-4770.54Mitochondrial carrier domain-containing protein n=... [more]
A0A7S4INV7_9STRA4.030e-4464.22Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2V2G3_9STRA4.810e-4464.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482RTX4_9ARCH6.620e-4464.60Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S3HQJ3_9STRA4.690e-4365.49Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A812XG79_SYMMI1.260e-4265.14PET8 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A6U3NU43_9STRA1.420e-4264.22Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4IP31_9STRA2.220e-4264.22Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Z5KKU9_FISSO3.920e-4264.22Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22709contigH-paniculata_contig22709:457..1458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.0
Seed ortholog evalue3.2e-40
Seed eggNOG ortholog2880.D8LEK6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial carrier protein
EggNOG OGs28MPG@1,2QU7F@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929631.5717492-CDS-H-paniculata_contig22709:456..6271622929631.5717492-CDS-H-paniculata_contig22709:456..627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22709 457..627 +
1691480943.7557025-CDS-H-paniculata_contig22709:456..6271691480943.7557025-CDS-H-paniculata_contig22709:456..627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22709 457..627 +
1622929631.5873697-CDS-H-paniculata_contig22709:1281..14581622929631.5873697-CDS-H-paniculata_contig22709:1281..1458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22709 1282..1458 +
1691480943.7665234-CDS-H-paniculata_contig22709:1281..14581691480943.7665234-CDS-H-paniculata_contig22709:1281..1458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22709 1282..1458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22709.6048.1prot_H-paniculata_contig22709.6048.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22709 457..1458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22709.6048.1

>prot_H-paniculata_contig22709.6048.1 ID=prot_H-paniculata_contig22709.6048.1|Name=mRNA_H-paniculata_contig22709.6048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
FFGGRARFLTYNFLQEKIPKQDTTVKKLSRNAVIGFCSSVVSDTCSNSIR
VIKVYKQSHTEGVTYVQAVKDVVKTDGVSGLLGRGLKTKIVANGMQGLMF
SVLWKAIEERINKDT*
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mRNA from alignment at H-paniculata_contig22709:457..1458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22709.6048.1 ID=mRNA_H-paniculata_contig22709.6048.1|Name=mRNA_H-paniculata_contig22709.6048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig22709:457..1458+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTTGGGGGGCGGGCTAGGTTCCTGACGTACAACTTCCTGCAGGAGAA GATTCCGAAACAGGACACCACGGTAAAGAAACTCTCGCGCAACGCAGTCA TCGGCTTCTGCTCGTCGGTGGTGTCCGACACATGCTCCAATTCCATCAGA GTCATCAAAGTATACAAGCAGGTTTGTGTGTGTGTGCTACACGATGTTAA TTCCCACACCTCTTTTTGTTAATAAATGACGAGCTTGTGCATTCTCCACG CTTTGCTCGACAACGAAGAGTGTCCAACAGCTCAGCGATTACGGATGGCA CGCGCTTGGGCGGTCTTGTGCCAGGAACTACTAAGTGACGTATATGGCCA TTTTTTGTATTACAACATAGTACTGGAGTCGAATCGTGCACACCCGCGAT CAGAGGTGGAAGTCTCCCCCCAAAATCAAAGCCGTCATTGGCACTTGACA CACACACCGCAGGTGGTAGTAACTGTGGGCCAAAACCTCTTCATATGGCG AAGTCACATCAAGTCCGGAATAGGAAACATAACAAAATAGTGTCAGTCGC GTTGGTTGGAGTATGAAAATATGTCATGTTCGATCGGCAAGTCTGCTACT GTTCTCGGTTTGGTCTTGGCGTCGTTCCCTCGAGTCATTTCAGTTTCGTA GTCAGTAACAAGGTGATCCCACCTATTTGTAGGATATGTCTGACACCCCC CGCCGTCCCCATCTCTGCCCCCGCCTCCCCCTCCCGACCCTTGATTACCT TGTGCTTGTTAATCCAACCGCCGCCATAAATGAAAAATGTGATCACGAAC ACGACGATGTTGCTTTTGTTTTCAGTCGCACACGGAAGGAGTCACGTACG TACAGGCCGTCAAGGACGTGGTGAAGACCGACGGGGTGTCTGGTCTCCTT GGACGGGGTCTCAAGACCAAGATCGTAGCCAATGGCATGCAGGGGCTCAT GTTCTCCGTTCTCTGGAAAGCCATAGAGGAAAGAATTAACAAAGACACCT GA
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Coding sequence (CDS) from alignment at H-paniculata_contig22709:457..1458+

>mRNA_H-paniculata_contig22709.6048.1 ID=mRNA_H-paniculata_contig22709.6048.1|Name=mRNA_H-paniculata_contig22709.6048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig22709:457..1458+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTTGGGGGGCGGGCTAGGTTCCTGACGTACAACTTCCTGCAGGAGAA
GATTCCGAAACAGGACACCACGGTAAAGAAACTCTCGCGCAACGCAGTCA
TCGGCTTCTGCTCGTCGGTGGTGTCCGACACATGCTCCAATTCCATCAGA
GTCATCAAAGTATACAAGCAGTTTTTTGGGGGGCGGGCTAGGTTCCTGAC
GTACAACTTCCTGCAGGAGAAGATTCCGAAACAGGACACCACGGTAAAGA
AACTCTCGCGCAACGCAGTCATCGGCTTCTGCTCGTCGGTGGTGTCCGAC
ACATGCTCCAATTCCATCAGAGTCATCAAAGTATACAAGCAGTCGCACAC
GGAAGGAGTCACGTACGTACAGGCCGTCAAGGACGTGGTGAAGACCGACG
GGGTGTCTGGTCTCCTTGGACGGGGTCTCAAGACCAAGATCGTAGCCAAT
GGCATGCAGGGGCTCATGTTCTCCGTTCTCTGGAAAGCCATAGAGGAAAG
AATTAACAAAGACACCTGATCGCACACGGAAGGAGTCACGTACGTACAGG
CCGTCAAGGACGTGGTGAAGACCGACGGGGTGTCTGGTCTCCTTGGACGG
GGTCTCAAGACCAAGATCGTAGCCAATGGCATGCAGGGGCTCATGTTCTC
CGTTCTCTGGAAAGCCATAGAGGAAAGAATTAACAAAGACACCTGA
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