mRNA_H-paniculata_contig2270.6045.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2270.6045.1
Unique NamemRNA_H-paniculata_contig2270.6045.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2270.6045.1 vs. uniprot
Match: R1EAH2_EMIHU (PALP domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EAH2_EMIHU)

HSP 1 Score: 84.0 bits (206), Expect = 4.830e-19
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 EERKRGVIAASAGNHALALAWHGTQLGIPVTVVMPDIAPLTKVMN 135
            E+R+RGVIAASAGNHALALAWHG+QLG+PVTVVMP +AP+TKV N
Sbjct:    6 EQRRRGVIAASAGNHALALAWHGSQLGVPVTVVMPTVAPMTKVQN 50
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BLAST of mRNA_H-paniculata_contig2270.6045.1 vs. uniprot
Match: D8LCR6_ECTSI (Threonine ammonia-lyase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCR6_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.070e-18
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 EERKRGVIAASAGNHALALAWHGTQLGIPVTVVMPDIAPLTKV 129
            EERKRGVIAASAGNHALALAWHGTQLGIPVTVVMP IAPLTKV
Sbjct:  137 EERKRGVIAASAGNHALALAWHGTQLGIPVTVVMPTIAPLTKV 179
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BLAST of mRNA_H-paniculata_contig2270.6045.1 vs. uniprot
Match: R1FA18_EMIHU (Threonine ammonia-lyase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FA18_EMIHU)

HSP 1 Score: 84.0 bits (206), Expect = 9.220e-18
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 EERKRGVIAASAGNHALALAWHGTQLGIPVTVVMPDIAPLTKVMN 135
            E+R+RGVIAASAGNHALALAWHG+QLG+PVTVVMP +AP+TKV N
Sbjct:   95 EQRRRGVIAASAGNHALALAWHGSQLGVPVTVVMPTVAPMTKVQN 139
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BLAST of mRNA_H-paniculata_contig2270.6045.1 vs. uniprot
Match: R1F5T9_EMIHU (HIT-type domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F5T9_EMIHU)

HSP 1 Score: 84.0 bits (206), Expect = 1.020e-17
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 EERKRGVIAASAGNHALALAWHGTQLGIPVTVVMPDIAPLTKVMN 135
            E+R+RGVIAASAGNHALALAWHG+QLG+PVTVVMP +AP+TKV N
Sbjct:   31 EQRRRGVIAASAGNHALALAWHGSQLGVPVTVVMPTVAPMTKVQN 75
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BLAST of mRNA_H-paniculata_contig2270.6045.1 vs. uniprot
Match: A0A482UBA8_9ARCH (Pyridoxal-phosphate dependent enzyme (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UBA8_9ARCH)

HSP 1 Score: 78.6 bits (192), Expect = 4.020e-16
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 EERKRGVIAASAGNHALALAWHGTQLGIPVTVVMPDIAPLTKVMN 135
            E RKRGVIAASAGNHALALA+HG +LGIPVTVVMP IAP+TK+ N
Sbjct:   40 EARKRGVIAASAGNHALALAYHGQELGIPVTVVMPRIAPITKIQN 84
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BLAST of mRNA_H-paniculata_contig2270.6045.1 vs. uniprot
Match: A0A6T7Z001_9EUKA (Threonine ammonia-lyase n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6T7Z001_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 5.520e-16
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 EERKRGVIAASAGNHALALAWHGTQLGIPVTVVMPDIAPLTKVMN 135
            E+RK GVIAASAGNHALALAWHG QL +PVTVVMP +AP+TKV N
Sbjct:   98 EQRKAGVIAASAGNHALALAWHGPQLDVPVTVVMPTVAPMTKVSN 142
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BLAST of mRNA_H-paniculata_contig2270.6045.1 vs. uniprot
Match: A0A6T9LTC0_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A6T9LTC0_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 6.360e-16
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 EERKRGVIAASAGNHALALAWHGTQLGIPVTVVMPDIAPLTKV 129
            E R +GVIAASAGNHALALAWHG QLG+PVTVVMP +AP+TKV
Sbjct:  116 EARSKGVIAASAGNHALALAWHGPQLGVPVTVVMPTVAPMTKV 158
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BLAST of mRNA_H-paniculata_contig2270.6045.1 vs. uniprot
Match: A4RXL8_OSTLU (PALP domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RXL8_OSTLU)

HSP 1 Score: 78.2 bits (191), Expect = 1.060e-15
Identity = 36/43 (83.72%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 EERKRGVIAASAGNHALALAWHGTQLGIPVTVVMPDIAPLTKV 129
            E+RKRGVIAASAGNHALALA+HG +LGIPVTV+MP IAPLTK+
Sbjct:   82 EQRKRGVIAASAGNHALALAYHGRELGIPVTVIMPSIAPLTKI 124
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BLAST of mRNA_H-paniculata_contig2270.6045.1 vs. uniprot
Match: A0A7S3BN12_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BN12_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 1.340e-15
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 EERKRGVIAASAGNHALALAWHGTQLGIPVTVVMPDIAPLTKV 129
            E R +GVIAASAGNHALALAWHG QLG+PVTVVMP +AP+TKV
Sbjct:  116 EARSKGVIAASAGNHALALAWHGPQLGVPVTVVMPTVAPMTKV 158
[Close]
BLAST of mRNA_H-paniculata_contig2270.6045.1 vs. uniprot
Match: A0A7S0DMW4_9EUKA (Threonine ammonia-lyase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DMW4_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 1.470e-15
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 EERKRGVIAASAGNHALALAWHGTQLGIPVTVVMPDIAPLTKVMN 135
            E++KRGVIAASAGNHALALA HG ++GIPVTVVMP +AP+TKVMN
Sbjct:  114 EQKKRGVIAASAGNHALALARHGKRMGIPVTVVMPTVAPMTKVMN 158
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2270.6045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R1EAH2_EMIHU4.830e-1982.22PALP domain-containing protein n=1 Tax=Emiliania h... [more]
D8LCR6_ECTSI1.070e-1897.67Threonine ammonia-lyase n=2 Tax=Ectocarpus TaxID=2... [more]
R1FA18_EMIHU9.220e-1882.22Threonine ammonia-lyase n=2 Tax=Emiliania huxleyi ... [more]
R1F5T9_EMIHU1.020e-1782.22HIT-type domain-containing protein n=2 Tax=Emilian... [more]
A0A482UBA8_9ARCH4.020e-1682.22Pyridoxal-phosphate dependent enzyme (Fragment) n=... [more]
A0A6T7Z001_9EUKA5.520e-1680.00Threonine ammonia-lyase n=1 Tax=Prymnesium polylep... [more]
A0A6T9LTC0_9EUKA6.360e-1681.40Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A4RXL8_OSTLU1.060e-1583.72PALP domain-containing protein n=1 Tax=Ostreococcu... [more]
A0A7S3BN12_9EUKA1.340e-1581.40Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S0DMW4_9EUKA1.470e-1580.00Threonine ammonia-lyase n=1 Tax=Amorphochlora amoe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2270contigH-paniculata_contig2270:21721..21861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog2880.D8LCR6
KEGG rclassRC00055,RC00418,RC00523,RC02600
KEGG koko:K01754,ko:K14163
KEGG ReactionR00220,R00996,R03661,R05578
KEGG Pathwayko00260,ko00290,ko00860,ko00970,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00260,map00290,map00860,map00970,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00121,M00359,M00570
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0016853,GO:0016854,GO:0016855,GO:0030378,GO:0036361,GO:0047661
EggNOG free text desc.L-threonine ammonia-lyase activity
EggNOG OGsCOG1171@1,KOG1250@2759
EC4.3.1.19,6.1.1.15,6.1.1.17
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929631.363217-CDS-H-paniculata_contig2270:21720..218611622929631.363217-CDS-H-paniculata_contig2270:21720..21861Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2270 21721..21861 +
1691480943.684211-CDS-H-paniculata_contig2270:21720..218611691480943.684211-CDS-H-paniculata_contig2270:21720..21861Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2270 21721..21861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2270.6045.1prot_H-paniculata_contig2270.6045.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2270 21721..21861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2270.6045.1

>prot_H-paniculata_contig2270.6045.1 ID=prot_H-paniculata_contig2270.6045.1|Name=mRNA_H-paniculata_contig2270.6045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
EERKRGVIAASAGNHALALAWHGTQLGIPVTVVMPDIAPLTKVMND*
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mRNA from alignment at H-paniculata_contig2270:21721..21861+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2270.6045.1 ID=mRNA_H-paniculata_contig2270.6045.1|Name=mRNA_H-paniculata_contig2270.6045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig2270:21721..21861+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGCGCAAAAGAGGGGTGATCGCGGCGAGCGCTGGAAACCACGCGCT
TGCGTTGGCGTGGCATGGTACCCAGCTCGGAATCCCGGTGACCGTCGTTA
TGCCGGACATCGCGCCGCTTACGAAGGTGATGAATGATTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2270:21721..21861+

>mRNA_H-paniculata_contig2270.6045.1 ID=mRNA_H-paniculata_contig2270.6045.1|Name=mRNA_H-paniculata_contig2270.6045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig2270:21721..21861+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGCGCAAAAGAGGGGTGATCGCGGCGAGCGCTGGAAACCACGCGCT
TGCGTTGGCGTGGCATGGTACCCAGCTCGGAATCCCGGTGACCGTCGTTA
TGCCGGACATCGCGCCGCTTACGAAGGTGATGAATGATTGAGAGGAGCGC
AAAAGAGGGGTGATCGCGGCGAGCGCTGGAAACCACGCGCTTGCGTTGGC
GTGGCATGGTACCCAGCTCGGAATCCCGGTGACCGTCGTTATGCCGGACA
TCGCGCCGCTTACGAAGGTGATGAATGATTGA
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