prot_H-paniculata_contig227.6042.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig227.6042.1
Unique Nameprot_H-paniculata_contig227.6042.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length250
Homology
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: D8LL00_ECTSI (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL00_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 1.350e-71
Identity = 124/139 (89.21%), Postives = 129/139 (92.81%), Query Frame = 0
Query:  111 MGLPGPGVGYHPXXXXXXXXAFFPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQDAS 249
            MGLPG G   HP  XXXXXXAFFPGSASLFEQLDK+VMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFV +IFGDI+LGLYLVRGDALVLMGELDE  EETPRL++VSADEIIEAQQEASAEERQDAKLDWLFQD S
Sbjct:    1 MGLPGMGF-QHPVPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 138          
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: A0A6H5JKJ0_9PHAE (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ0_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 2.230e-70
Identity = 124/140 (88.57%), Postives = 130/140 (92.86%), Query Frame = 0
Query:  110 RMGLPGPGVGYHPXXXXXXXXAFFPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQDAS 249
            RMGLPG G   HP  XXXXXXAFFPGSASLFEQLDK+VMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFV +IFGDI+LGLYLVRGDALVLMGELDE  EETPRL++VSADEIIEAQQEASAE+RQDAKLDWLFQD S
Sbjct:  107 RMGLPGMGF-QHPLPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEDRQDAKLDWLFQDLS 245          
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: A0A835ZG91_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG91_9STRA)

HSP 1 Score: 146 bits (369), Expect = 8.750e-40
Identity = 86/158 (54.43%), Postives = 105/158 (66.46%), Query Frame = 0
Query:  104 GVVFPPRMGLPGPGVGY---------HPXXXXXXXXAFFPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALEETPR-----LKKVSADEIIEAQQEASAEERQDAKLDWLFQD 247
            G   PPR G  GP   +          PX       +FFPG+ASL EQLDK VMVVLRDGRHLVG+MRSYDQFSNIVLEDTHERHFVG ++GDI LGLY+VRGD++VL+GE+              LK+V+ADEI++AQQE+  +     K++W F D
Sbjct:   80 GAPMPPRGGPMGPPPQFPXXGAMPLGRPXPPVIAPPSFFPGAASLHEQLDKVVMVVLRDGRHLVGLMRSYDQFSNIVLEDTHERHFVGALYGDIPLGLYIVRGDSVVLLGEVAAEXXXXXXXXXALLKRVTADEILQAQQESDVDP---FKVEWDFGD 234          
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: K3WSU0_GLOUD (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU0_GLOUD)

HSP 1 Score: 132 bits (333), Expect = 8.320e-36
Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 0
Query:  132 FFPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWLF 245
            +FPGS SL EQLDKK++VVLRDGRHLVG +RS+DQFSNI+LEDT+ERH    +F DI LGL ++RGD +VL+GELDE  E + P +K+ S +EI+EA++  +A+     +  W F
Sbjct:    4 YFPGSISLIEQLDKKILVVLRDGRHLVGYIRSFDQFSNIILEDTYERHVADGMFCDIELGLNIIRGDNIVLLGELDEDKERDQPHMKRASIEEILEAEERLNAKGAASVREQWDF 118          
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: A0A7S2XVC4_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC4_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.080e-35
Identity = 69/115 (60.00%), Postives = 91/115 (79.13%), Query Frame = 0
Query:  132 FFPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALEETPRL-KKVSADEIIEAQQEASAEERQDAKLDWLF 245
            FF G  SL EQLDKK++VVLRDGRHLVGV+RS+DQFSN+V+E+THERH V  IFGDI LGLY+VRGD +VL+GE+DE  E + +  ++VSA+EI+ AQ+  + E++   K+ W F
Sbjct:    4 FFAGGMSLVEQLDKKILVVLRDGRHLVGVLRSFDQFSNMVMENTHERHVVEGIFGDIPLGLYIVRGDNVVLLGEVDEEKESSSQHPRRVSAEEILHAQR--NTEDK--TKVAWDF 114          
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: H3GH42_PHYRM (U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=Peronosporaceae TaxID=4777 RepID=H3GH42_PHYRM)

HSP 1 Score: 126 bits (316), Expect = 2.880e-33
Identity = 59/115 (51.30%), Postives = 86/115 (74.78%), Query Frame = 0
Query:  133 FPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQ 246
            FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQ+SNI+LEDT ERH  G +F DI LGL ++RGD +VL+GELD   E + P +K+V  +E++EA+++ +       +  W F+
Sbjct:    5 FPGNSSLIQQLDKQVLMVLRDGRHLVGYLRSFDQYSNIILEDTFERHVAGGLFCDIELGLNIIRGDNIVLLGELDSEKERDQPHMKRVELEEVLEAEEQLNEAGNTSVRQQWDFE 119          
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: W4GB80_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GB80_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.240e-33
Identity = 65/114 (57.02%), Postives = 86/114 (75.44%), Query Frame = 0
Query:  133 FPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWLF 245
            FPG +SL EQLDK+++VVLRDGRHLVG++RS+DQFSNIVLE T ERH VGN + DI LGLY++RG+ +VLMGELD+A E E   L + SA+E++ A+ E + +     +  W F
Sbjct:    7 FPGVSSLVEQLDKQLLVVLRDGRHLVGIIRSFDQFSNIVLEGTCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAEDVNLTRKSAEEVLTAEMEQNEQGLPTVRDAWNF 120          
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: A0A6V1WH12_HETAK (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WH12_HETAK)

HSP 1 Score: 125 bits (313), Expect = 7.410e-33
Identity = 63/112 (56.25%), Postives = 86/112 (76.79%), Query Frame = 0
Query:  134 PGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLF 245
            PG   L EQLDK++++VL+DGRHL+G +RS+DQFSN+V+E+T ERH V   +GDI LGLYLVRGDA+VL+GE+D+A  E   L++VSADEI+E ++E  +     A+ DW F
Sbjct:    7 PGIMGLVEQLDKRILIVLQDGRHLIGTLRSFDQFSNVVIENTFERHVVDGCYGDIPLGLYLVRGDAVVLLGEVDDAGHEGI-LRRVSADEILELEREKESR----ARDDWDF 113          
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: A0A0P1A9M0_PLAHL (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9M0_PLAHL)

HSP 1 Score: 123 bits (309), Expect = 3.520e-32
Identity = 60/113 (53.10%), Postives = 85/113 (75.22%), Query Frame = 0
Query:  133 FPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWL 244
            FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQFSNI+LEDT+ERH  G +F DI LGL ++RG  +VL+GELD   E + P +K+V  +E++EA++  + E      L +L
Sbjct:    5 FPGNSSLIQQLDKQVLMVLRDGRHLVGNLRSFDQFSNIILEDTYERHVAGGLFCDIELGLNIIRGGNIVLLGELDSDKERDQPHMKRVKLEEVLEAEERLNEEGNTSLSLSFL 117          
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: A0A6G0XJC2_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJC2_9STRA)

HSP 1 Score: 123 bits (308), Expect = 4.690e-32
Identity = 62/114 (54.39%), Postives = 85/114 (74.56%), Query Frame = 0
Query:  133 FPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALEETPR-LKKVSADEIIEAQQEASAEERQDAKLDWLF 245
            FPG  SL EQLDK+++VVLRDGRHLVG++RS+DQ+SNIVLE+T ERH VGN + DI LGLY++RG+ +VLMGELD+A E     L + +A+E++ A+ E   + +   +  W F
Sbjct:    4 FPGVTSLVEQLDKQMLVVLRDGRHLVGMIRSFDQYSNIVLEETCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAADENLVRKTAEEVLTAEMEQQEQGQATVRDTWNF 117          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL00_ECTSI1.350e-7189.21U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
A0A6H5JKJ0_9PHAE2.230e-7088.57U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
A0A835ZG91_9STRA8.750e-4054.43U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=T... [more]
K3WSU0_GLOUD8.320e-3656.52U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=G... [more]
A0A7S2XVC4_9STRA2.080e-3560.00U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=F... [more]
H3GH42_PHYRM2.880e-3351.30U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=... [more]
W4GB80_9STRA3.240e-3357.02U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=A... [more]
A0A6V1WH12_HETAK7.410e-3356.25U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=H... [more]
A0A0P1A9M0_PLAHL3.520e-3253.10U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=P... [more]
A0A6G0XJC2_9STRA4.690e-3254.39U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 137..205
e-value: 5.3E-17
score: 72.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 139..204
e-value: 4.8E-15
score: 55.0
NoneNo IPR availableGENE3D2.30.30.100coord: 136..243
e-value: 1.1E-30
score: 108.0
NoneNo IPR availablePANTHERPTHR15588LSM1coord: 131..239
NoneNo IPR availablePANTHERPTHR15588:SF8U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1coord: 131..239
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 137..211

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig227contigH-paniculata_contig227:6957..14972 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig227.6042.1mRNA_H-paniculata_contig227.6042.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig227 6513..16763 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig227.6042.1 ID=prot_H-paniculata_contig227.6042.1|Name=mRNA_H-paniculata_contig227.6042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=250bp
MQSPSTALYPRRRSQFRTRIETTTMAEAAARGPSRGSLQQQQPPPQQQQQ
QQQQYYQQTQQAQHSLQQQQLHGQGTGAGGGVVDGPVAGARSSHLRTPHP
PPVGVVFPPRMGLPGPGVGYHPPPPPPPPPAFFPGSASLFEQLDKKVMVV
LRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDAL
VLMGELDEALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQDAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf