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Homology
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: D8LL00_ECTSI (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL00_ECTSI) HSP 1 Score: 224 bits (571), Expect = 6.940e-65 Identity = 124/139 (89.21%), Postives = 129/139 (92.81%), Query Frame = 1
Query: 775 MGLPGPGVGYHPXXXXXXXXAFFPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQDAS 1191
MGLPG G HP XXXXXXAFFPGSASLFEQLDK+VMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFV +IFGDI+LGLYLVRGDALVLMGELDE EETPRL++VSADEIIEAQQEASAEERQDAKLDWLFQD S
Sbjct: 1 MGLPGMGF-QHPVPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 138
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: A0A6H5JKJ0_9PHAE (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ0_9PHAE) HSP 1 Score: 225 bits (573), Expect = 1.230e-63 Identity = 124/140 (88.57%), Postives = 130/140 (92.86%), Query Frame = 1
Query: 772 RMGLPGPGVGYHPXXXXXXXXAFFPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQDAS 1191
RMGLPG G HP XXXXXXAFFPGSASLFEQLDK+VMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFV +IFGDI+LGLYLVRGDALVLMGELDE EETPRL++VSADEIIEAQQEASAE+RQDAKLDWLFQD S
Sbjct: 107 RMGLPGMGF-QHPLPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEDRQDAKLDWLFQDLS 245
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: A0A835ZG91_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG91_9STRA) HSP 1 Score: 146 bits (369), Expect = 5.410e-36 Identity = 86/158 (54.43%), Postives = 105/158 (66.46%), Query Frame = 1
Query: 754 GVVFPPRMGLPGPGVGY---------HPXXXXXXXXAFFPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALEETPR-----LKKVSADEIIEAQQEASAEERQDAKLDWLFQD 1185
G PPR G GP + PX +FFPG+ASL EQLDK VMVVLRDGRHLVG+MRSYDQFSNIVLEDTHERHFVG ++GDI LGLY+VRGD++VL+GE+ LK+V+ADEI++AQQE+ + K++W F D
Sbjct: 80 GAPMPPRGGPMGPPPQFPXXGAMPLGRPXPPVIAPPSFFPGAASLHEQLDKVVMVVLRDGRHLVGLMRSYDQFSNIVLEDTHERHFVGALYGDIPLGLYIVRGDSVVLLGEVAAEXXXXXXXXXALLKRVTADEILQAQQESDVDP---FKVEWDFGD 234
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: K3WSU0_GLOUD (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU0_GLOUD) HSP 1 Score: 132 bits (333), Expect = 1.330e-32 Identity = 66/119 (55.46%), Postives = 89/119 (74.79%), Query Frame = 1
Query: 838 FFPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQDAS 1191
+FPGS SL EQLDKK++VVLRDGRHLVG +RS+DQFSNI+LEDT+ERH +F DI LGL ++RGD +VL+GELDE E + P +K+ S +EI+EA++ +A+ + W F +S
Sbjct: 4 YFPGSISLIEQLDKKILVVLRDGRHLVGYIRSFDQFSNIILEDTYERHVADGMFCDIELGLNIIRGDNIVLLGELDEDKERDQPHMKRASIEEILEAEERLNAKGAASVREQWDFDVSS 122
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: A0A7S2XVC4_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC4_9STRA) HSP 1 Score: 131 bits (329), Expect = 4.060e-32 Identity = 69/115 (60.00%), Postives = 91/115 (79.13%), Query Frame = 1
Query: 838 FFPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALEETPRL-KKVSADEIIEAQQEASAEERQDAKLDWLF 1179
FF G SL EQLDKK++VVLRDGRHLVGV+RS+DQFSN+V+E+THERH V IFGDI LGLY+VRGD +VL+GE+DE E + + ++VSA+EI+ AQ+ + E++ K+ W F
Sbjct: 4 FFAGGMSLVEQLDKKILVVLRDGRHLVGVLRSFDQFSNMVMENTHERHVVEGIFGDIPLGLYIVRGDNVVLLGEVDEEKESSSQHPRRVSAEEILHAQR--NTEDK--TKVAWDF 114
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: W4GB80_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GB80_9STRA) HSP 1 Score: 126 bits (316), Expect = 2.840e-30 Identity = 66/118 (55.93%), Postives = 87/118 (73.73%), Query Frame = 1
Query: 841 FPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQDAS 1191
FPG +SL EQLDK+++VVLRDGRHLVG++RS+DQFSNIVLE T ERH VGN + DI LGLY++RG+ +VLMGELD+A E E L + SA+E++ A+ E + + + W F S
Sbjct: 7 FPGVSSLVEQLDKQLLVVLRDGRHLVGIIRSFDQFSNIVLEGTCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAEDVNLTRKSAEEVLTAEMEQNEQGLPTVRDAWNFDHPS 124
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: H3GH42_PHYRM (U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=Peronosporaceae TaxID=4777 RepID=H3GH42_PHYRM) HSP 1 Score: 125 bits (315), Expect = 3.430e-30 Identity = 59/115 (51.30%), Postives = 86/115 (74.78%), Query Frame = 1
Query: 841 FPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQ 1182
FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQ+SNI+LEDT ERH G +F DI LGL ++RGD +VL+GELD E + P +K+V +E++EA+++ + + W F+
Sbjct: 5 FPGNSSLIQQLDKQVLMVLRDGRHLVGYLRSFDQYSNIILEDTFERHVAGGLFCDIELGLNIIRGDNIVLLGELDSEKERDQPHMKRVELEEVLEAEEQLNEAGNTSVRQQWDFE 119
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: A0A6V1WH12_HETAK (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WH12_HETAK) HSP 1 Score: 124 bits (312), Expect = 7.950e-30 Identity = 63/112 (56.25%), Postives = 86/112 (76.79%), Query Frame = 1
Query: 844 PGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLF 1179
PG L EQLDK++++VL+DGRHL+G +RS+DQFSN+V+E+T ERH V +GDI LGLYLVRGDA+VL+GE+D+A E L++VSADEI+E ++E + A+ DW F
Sbjct: 7 PGIMGLVEQLDKRILIVLQDGRHLIGTLRSFDQFSNVVIENTFERHVVDGCYGDIPLGLYLVRGDAVVLLGEVDDAGHEGI-LRRVSADEILELEREKESR----ARDDWDF 113
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: A0A6G0XJC2_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJC2_9STRA) HSP 1 Score: 123 bits (308), Expect = 3.110e-29 Identity = 63/118 (53.39%), Postives = 86/118 (72.88%), Query Frame = 1
Query: 841 FPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALEETPR-LKKVSADEIIEAQQEASAEERQDAKLDWLFQDAS 1191
FPG SL EQLDK+++VVLRDGRHLVG++RS+DQ+SNIVLE+T ERH VGN + DI LGLY++RG+ +VLMGELD+A E L + +A+E++ A+ E + + + W F S
Sbjct: 4 FPGVTSLVEQLDKQMLVVLRDGRHLVGMIRSFDQYSNIVLEETCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAADENLVRKTAEEVLTAEMEQQEQGQATVRDTWNFDHPS 121
BLAST of mRNA_H-paniculata_contig227.6042.1 vs. uniprot
Match: A0A0P1A9M0_PLAHL (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9M0_PLAHL) HSP 1 Score: 123 bits (308), Expect = 3.300e-29 Identity = 60/113 (53.10%), Postives = 85/113 (75.22%), Query Frame = 1
Query: 841 FPGSASLFEQLDKKVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDALVLMGELDEALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWL 1176
FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQFSNI+LEDT+ERH G +F DI LGL ++RG +VL+GELD E + P +K+V +E++EA++ + E L +L
Sbjct: 5 FPGNSSLIQQLDKQVLMVLRDGRHLVGNLRSFDQFSNIILEDTYERHVAGGLFCDIELGLNIIRGGNIVLLGELDSDKERDQPHMKRVKLEEVLEAEERLNEEGNTSLSLSFL 117
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 226.1 |
| Seed ortholog evalue | 1.8e-56 |
| Seed eggNOG ortholog | 2880.D8LL00 |
| Preferred name | LSM1 |
| KEGG ko | ko:K03952,ko:K12620,ko:K14794,ko:K16931 |
| KEGG TC | 3.D.1.6 |
| KEGG Pathway | ko00190,ko01100,ko03018,ko04714,ko04723,ko04913,ko04925,ko04927,ko04932,ko04934,ko04979,ko05010,ko05012,ko05016,map00190,map01100,map03018,map04714,map04723,map04913,map04925,map04927,map04932,map04934,map04979,map05010,map05012,map05016 |
| KEGG Module | M00146,M00397 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000288,GO:0000290,GO:0000291,GO:0000339,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005845,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009628,GO:0009631,GO:0009651,GO:0009892,GO:0009987,GO:0010035,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010629,GO:0010721,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019827,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030424,GO:0030425,GO:0032501,GO:0032502,GO:0032991,GO:0033962,GO:0034518,GO:0034622,GO:0034641,GO:0034655,GO:0035770,GO:0036002,GO:0036464,GO:0036477,GO:0042221,GO:0042538,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044297,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0065003,GO:0065007,GO:0070925,GO:0071044,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097447,GO:0097458,GO:0098727,GO:0120025,GO:0120038,GO:0120114,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1990124,GO:1990726,GO:1990904,GO:2000026 |
| EggNOG free text desc. | deadenylation-dependent decapping of nuclear-transcribed mRNA |
| EggNOG OGs | KOG1782@1,KOG1782@2759 |
| Ec32 ortholog description | Sm-like protein LSm1 |
| Ec32 ortholog | Ec-11_006170.1 |
| COG Functional cat. | J |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko03009,ko03019 |
| Exons | 4 |
| Model size | 2947 |
| Cds size | 750 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig227.6042.1 >prot_H-paniculata_contig227.6042.1 ID=prot_H-paniculata_contig227.6042.1|Name=mRNA_H-paniculata_contig227.6042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=250bp
MQSPSTALYPRRRSQFRTRIETTTMAEAAARGPSRGSLQQQQPPPQQQQQ
QQQQYYQQTQQAQHSLQQQQLHGQGTGAGGGVVDGPVAGARSSHLRTPHP
PPVGVVFPPRMGLPGPGVGYHPPPPPPPPPAFFPGSASLFEQLDKKVMVV
LRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGNIFGDIALGLYLVRGDAL
VLMGELDEALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQDAS* back to topmRNA from alignment at H-paniculata_contig227:6513..16763+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig227.6042.1 ID=mRNA_H-paniculata_contig227.6042.1|Name=mRNA_H-paniculata_contig227.6042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10251bp|location=Sequence derived from alignment at H-paniculata_contig227:6513..16763+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATATGGCCAGCGATCCTAACGGGTTTCTAATGTAGCTTGACTAGACTT
CTATAGGATGTCTCGTGTCACAACTGCAGCACGGTATGGTATCATTAATG
ACCTCCAACCACCTGTACTCGTCTTCTACTCTGAGAGCTAAAGTCGCCTT
TTTTTGCGCCAAATCTTTTTATCCTGCCTACCTGGCTGGTCATCTCGTCA
CTGCTGCTGGAGCAGACTCTGCAACGGTCACTAGCGTTCCACATCCCAAT
CCAGCCTGTCCCGAGCCCGCGTAATTATCTATTGATTGTACCGCGGCGCC
ATCATACCGCCGTCCGCCCTTTCCCTGCCCCATCTTATTCAGTAGAATTG
CGGGTTGCGAGCCACCACGGTCCTGCGTGCTGCATTAACACCTCGGATTA
TTGACGCATTTTCTAGGTAGTAGCTCGTAAGCGACGTGTTCAAAATGCAG
TCTCCCTCTACCGCGCTGTACCCCCGTCGCCGCAGTCAGTTCCGCACCCG
CATAGAGACCACAACCATGGCCGAGGCAGCAGCCAGAGGCCCGAGCAGAG
GCTCATTGCAACAGCAGCAGCCACCACCACAACAACAGCAGCAACAACAA
CAACAATATTACCAACAGACACAACAAGCTCAACACTCACTACAACAGCA
GCAGCTGCATGGACAGGGGACAGGAGCAGGGGGGGGGGTGGTGGATGGCC
CGGTTGCGGGCGCGCGAAGCTCCCATCTGCGAACACCACATCCACCTCCC
GTGGGTGTGGTGTTTCCACCAAGAATGGGACTTCCTGGGCCTGGGGTTGG
CTACCACCCGCCGCCGCCACCTCCGCCCCCACCGGCCTTTTTCCCGGGAT
CGGCCAGTTTGTTCGAGCAGCTCGACAAGAAGGTCATGGTGAGTACTGTG
TGTACTGTAATCTAGTACAATATTCTAGTGCAGGTACCGCCAGCATCAAA
GTAAGCTGGACACTCAGCCGTCTAGGATGTGCCTGCCTCTCGGCTGCTGT
GTAAATAATGTAACGGACGTGCTACGTATTGGTCGTACCTTGTACCAATA
TTGTAGAGAATCTTGCTAGCCCTCAGCCAACCGGTAGATATAAGCATTTG
AGGAATCGCTTCCTGGAAGCACTACTACTCAATGAGACACCGCACCGCAT
GTTGAAGGGCATCGAACTGGCAATGTCATTACAGCAAGGACAGTGAAGTG
AAGTGAAGTAGAAGCGGAGAATCGCTTGCTGGGCTGGACTGATCGAAAAG
GCTTCTTCAGTATGCATTATTTCGTTTCAAACGTGGTCGTCTTATCTTGA
TGCAGCCGCAGAAGATAGCACGTGCCGTCTCAGGTCTATTCGTCGACTTG
TCAGATAATATTTTGTTTGTCGATGGTGGCATAGCGGCATGGCGAAATAA
GAGATGATTCCATCTTATCCAGAGCTCTGACGCCCATTGGGCGCAGGGGG
TGTTACCCCCTTTCATTGGCCTGGGTAGCACAGCAACTCCAGGCATATTC
CTATCGCGTAGAGCTCTATGTGTCATGTATATCACAAGTACAATGTCTGA
TAGAAAAAATACGCAAGAACAAGTACGACATGCTTTTTCCCGCGGGGCCT
GAGGCCTCCTGTGTGAGACTGTACTGTGCAGGTGATGTATTTGCCAGGTT
CACTTGGGTCCACGTGTATTACGACTGGATTATTTGTTTTTTTGTTCGGC
GATATTAATATTACCACCTCTGCTTGCTTTCTGAGTAGAATTTGACCTCG
TGCGTCCTACAGTACATGATTTTTGCTGTCTATCCCATGGCTCAAGTCGT
GGAGACAAACTACCAAAAATGGCCGGAGTTGAAGAATTCATCCTTCAGAT
AGAGCTAGGCGGGTAAAACATAATTTTTTGGCTGAGGCCGGGGGGAATTG
TCTTGTCGATCTCTGTGACTGTCGCCCTCCGCGAAATGCCCACGTAATCG
CAACCTGAAAAGCAAGCCAACACAACGACTGTGCCATGATAGCAAAGATG
GGAAACTGCCGCTATGCAGGAGGTACGTGCAACTCAGACGGGGTATTCAA
ATGCTCCAGTGTACGAAAACTCCAGCACTCGACATTTTGAGATCTGATTT
TTGTTCCGAAACAGCCTTTTTGGATGACACCCAAAGGGTTTAGTGTGAAG
GGTTAAGGAATGTTTTGTTGTCTTGGGCTAAAAAGAGTGTGTGGTGGTCG
GTTGATTAGTTTTTCTTAATATCCGCTACAGACAGTACTCTAGGTTTGTG
GAGGCCAATTTAGCCAAATCAAGTAGTTCTGCTCAGGACTTGAGAGGAGC
CGTCAAACTCGTCGCCCACATACCGTCCGCTGCCCGACCATGACATCTAC
CCTGTTCGTAATAGTTGAGTAGTTGCCTCGTGGTAACGCTGATCCCAAAA
CCAGTTCTGCGAAAATAGTCTTGATAATATCCAGCGTAGTTTCGAGTGTC
GTATCCACGAGTTCATCATCTACATCCGTACCTGGTTTCATGTCATACGG
GTTCATAGTGTACGTATAAGCAGGCGTGTGGCACACAATCAATACACGAG
TCTAACCAACGCGATGAGGCACAAGCGTGTAAGTGATGACGCATATACGG
TAGATATCAAGTAGGTGCAATGGTACCTCACCTCCCCCCCTTGATCGTGC
GGTTAATTCAAGAAAAGCTCTTTTTGCGCCGCCGAAGGACGCGCCAGCTG
CTGCGCAAGTACGAAACACATAGCCGCTAGTCAGTTCAACCGATTAACCG
AGCGGTGGTTACACACCCCCAGACATGTGAAACGGGTAGTAGCAACCCCT
ACGAAACTTGGGAGAGCGGCTGTGCCCTTTTTAACCCACTGTGGGTTAAT
GCGATCGATCGCTCTTGTTGAAAAAAATCCACCGGACTCAATTGGCGCAC
ACCCCCAACACTACAGCAATACCGATATGCACGAACGTTTGCTTTACTGT
CCACATATGGAGATTAGCGAAAAGCACTAACTGTATGCGATGGATGTAGT
GAGGTCGAAGCTTAAAATGGCCAGATTGGCTGTCTTTCGCTTAGTATCTC
TTCCATTCGAACCTCTTAGCTTTCAGTGCATTGCAATGGATACATCGTCA
CGTATTTTGCGCCTTTGGCAGTACCATACTGTCACGCACTATCGCGGGCT
GTTAAACCCAGTTTTTGTCAAAATCGCACAGCGGTTACTACAAAGCAACA
AGTGATGAATGTTGCACTCACAAACGTTGGACCTTGCCGTGGTGGTGCAG
GAGTGGGCATGGTATGTCAGGTGCTGTGTTGACAATGATTCGTTTTGACC
CAAGCAGTTTAGGATTTCGTAGGGCTGAGGTACTAGCAGTATATTGGGCC
ATCTAAGTACCGTAGGGTAGGGTGTCGGGCAGGCACGAATACTTTGGGTG
ATCACTTTTCAACATCTATCTTCTCGACAACTTGAACTCTTTCGTTGGGC
AAATATAGCCGAGGTCTGAGGATAGGGTGGGCTGGCTGGCTGGCTGGCTC
TTTTCACGGTGCGGTATCCTGCTTCTCGATTAATTCGAGTTTACACGTGT
GGTGTTAATTGTACACGGCGAGCGACGGTAGTGTCCTCTATTCCTCGGGG
GATATTGTTTTGTGCGGTTGACGGACAGCGTCACCACTTTCGTTGTCCAA
AATCTTGCGCAATACGTTGTTCGTTCGTCTCTGCCAGCACATGGATAAGA
GCGTTTATGGTTGGAAGCTACGATGCTATGATGGCCCTCATGTGGTAAAA
ACAAAAAAAAACGCAGTTACAAGTACAGCAGTCGCTCTTCAGTGTCGGCT
GACATAAGCCGTATGACGCAGTGTCGTTCTGCGTACCGTTACCGATCGCC
CCAGTTTACACTCGGTCCGTTATACGATATGTAGCTGTGGACAGGGTGAA
ATATGATCTGTACCATTTTATTGCTGACTGAACCCCAAAATGAAACACTC
GCGCTCGGGACTGGGGTGCTAGGCTTGTTGTATCACATCATATCGATGCA
ACTACAGTAGTAATGTAAGAAGCTAGCTCGACACCGGCACTTTGGATGTG
CCGTAGACTGGCCCCCCGGCATTGGGCTGCAATACCAATACGCCACGTCT
AAAATGCTGCAATTGCGTGTGTACAAATGATCAATCACAGCTGTCGTGAA
AGACTTGGCAATTTGTGTTCGAAAACGCTTGGTGAGCAATGGAAACCGAG
ACTAGGCTATCAGGCGCGTCTTAAATACATCAATTTAGCCTCCTCGTCCC
TCGTTCGGAGAAACAAAGTCAACGTTAATTCCCTCTCGGAGAAACAAACA
CCACAATCGCTGACTGCACTCGCGGTGTTTTGAAAGCAGCTCCCAGTCAC
CACTCCTCGCTGCGGGTCCTACACGAGAAACGAGCCGCTGGATGAGTGTA
ACCAAGCCACATACTTGTGGTACTCCGTCGACAGCAGCGGTGCACACGAA
GAGTCGAAATGCGTGCATTCCTGAGACCGCCGACGTTGTCAACCCAACCA
GCCACTCCGCGCTAGACGCTTCGGTTGATCAGAATCCACTCCTGTGCTCC
GTGAGTTGCCGTCTTTCTGTATTTGGGTGAAGGGTATATTGCAGATCACC
CCGGGGAATGCGTGCTTTCTTTCAAAACCATTTTTGTCGAAACGTGATAA
AACAAACCTCGACTAAATAGATCTTTCAATAGATTATATAACTTGTGGGT
GTCGAGCGACGTACTCGTAGCTATCGACAAATCGAGTTGGAAAAACACCA
TCATGCAGGGTTCGAGGGTAATGTAACTCGCACGGTAGTGGGATGTGAAC
CTGATACCCTTGTGTGTGTGTTTTCTTCTGTCTCAAATGTCCGCTTTGTT
CTCTACAAGTACTCCACACGCCTGCTCTACCTAGTCTTCTGAGACTTGGA
GAGTGATTGACAAGATTAACGCCGCGTTGAATCCTAATTGGGCACCCGTT
CGCCCCAGGTCCTCGCACGTTTGTTTTGTTCACCAAGCTTGAAATTTCGG
GAGGACCTGGCCGATACCGTCGCCAGAATCTGTTGTGACGGTTCGCGCTT
CGTGTTGCGCCTTGGAGCAGAACCAATGTGGACTCTAACGTCAACGGCAA
CCCCGACCCCTAGGCCTAGGACGTGGATATCAACAGAAAGAGCTTAACAC
GGTAATCGGCGTTGTGGCATCATGCGTGGAGGAGCAACATCTTTTCGGGG
CATGTGTTGACACATCCCGAAATATTCCGAGATTTCTTTTCCTGGATATG
ATTTGTGGTCAAGATTGTATACCCAGCCGAGCTGATCAACCGCTGCTGTC
TAACAAATGTGTCATAATTCTATTTAGCGGTTCGTGGATAATATATAGGT
GGTGGTTTAATGGGTTGTTTGGTGCCTTACGCTCCATTGCACCTCGAGTT
GAGTAGAAGTAACAGTTCGTCTTGACCTGTAACCCTAAATCCCGCCACCC
AGCCGTCCGTTAGCACTGGCAGGGCGCAATCAACAGGCAGCATCTGTCCT
GTCCTTTCCTGTCCTGTCATACAAAAAAGCAGTAATTTGTTCAGAAAGGA
AAAAGTAGCATCAGCTGTCGTGTTCCTTCCTTGGCAAATCGTTGCAGACC
AGCAAGCCTACATTTTGATATAGTTCGATGTGCAATTTTTGGCAGCCCCG
CGTCGACAAAGGAGGGGAGGGTTGGGTACGGAGGTGGTGTACCGAATTTT
GACGAACAGAACTGTTTTAACCTGGTTGAGGTCAGACCCGCATGTTGAAA
AATATACTATAGTGCATCGAAGTCTCAGCGTGTTTTGGTTATCAATATAA
ACGTAGAATATCATATGTCGACGCTAGGTGTAAAAGGGCGTCATATTTTT
TTATAACTGTCATGTACGCCAAAGGCTGGCACAGTAGCCGGGGCGTCATG
TGCTTGATGCAGAAGTTGTACAGCTAACATAATGAAGTACACGCATCGGG
TCCCTCGAGCTCTGGCAGTCAGATGAACAGCGCTAATAACGTGATGCCGT
AGACTTGCGCCCAGCAACAATATATATATATATATAGACTGTACCACTGC
ATGCAGCACTATGTTTTCGGCACACAAAAGCTTGCCGGCACCCGTATATG
ATTCCGAGATTTCCGTAGCGAACGATAAGCACTGCGTGTGTGGTATCCTG
TAATGAGTAACGGTACCCACAGGCACAGCTGGATGTAATTTGCCACAATC
AGTCGTGGCAGTCGGGACATGACAACATGACTGATATTTATCCAAGTTGG
AAATTAAGCGATGGGCTTCCTAGAACAAAAGTGTTTTTCCCCCTCATTTC
CCTCTCCACATGTGCGGGGGTTAAAGCCGGCATCCTCGCCGACTTCTGTC
ATCATTGTTGATAACGACAACTTTCTCGTGAAAAGCTGTGTCGGAGTGTT
TATCTTGTGTCATATTCCAAACACCCTTCCTTGCTGATATTCATACTGAG
TGTTCATCAATTTACGCGCTTGTCGCAATTTAAACAGGTGGTTCTGCGCG
ACGGGCGACATCTTGTAGGGGTCATGAGGAGCTACGACCAGTTTTCAAAC
ATCGTACTGGAGGACACACACGAACGACACTTTGTGGGGAGTGAGTGCTA
AGTGCAGATAAAAGTACAGTAGTAACCGCTGTCATTATCCACACAGAAAT
GTGTTTCAAGTTTCGTACGCCGTCCCCGAACCTCCAATGAGGTGGTTTTT
CCCTCGTCACTCTTTCACTCTCAACCATTAACCAACAAGCAAAAATCAAT
TCCTTATATTTTAGTAGGGGTGAACAGGAGTGAAGCGAGGTTTAACCTTT
CCTTCCCATCGGATGATGACGAATTCAACCATATACAAGAGGGACCCAAA
AGAAAATCTGGTCTGTTAGTCACACCGTTTGTCCAGCATTTCTTGAAACG
TTTTGAGTGCCACACTAAATGAAGCACTGTCAAGCCGCTGGCGAGGTTAC
TCTGAAACCAGTGCTTCCGTTCCATAGTTCCTGCTCAACCCAGTGCCTGT
TCGGTGTGTGCTGTTACGCTAATCAAAGATGGAAATGAAAAAATGCCTCA
CCTGCAAGTGAGGCTACGAAACTACGCTTTGTGCGTTGTGGACAGACTCG
ATTGTTCTCACGGCGCACGTCACAGAACAGTTCAAACAACTTGATATCTG
TGCCTGGCATCAGTGTTGTCAAAGCGCATTGTTTTCTTTATTCGTGCCTA
CTGTGTGCGTGTTACGGCGACAACCTGACCTGAACATGGATTCCCTCAAG
GACCCCGTCATGTACTTGGAACACTGTTCACCATTGAGGAAAAAGATGTG
ACCTATTCTGCCTTAGGTTGGGAGATATTGGTCTTGGACAGCTCGAGCGC
TACATTCAATGACACGCTCCCGTATCCATAGCCATCTGATCCTGACCTCA
CCACTTCGTCCTAGAATTACGCTTTTCAGTGCCGGCTTGGCGCATGGATT
TGTGACAAGACCAAGCAGTTGTAAGGATGGTACAGCCTGTGAACTTATTT
ATTCTGAATGCTTACTTCCTGCTTGCCACATACGCTCTACATTTTTGTCA
TGTACCGTATGTCAAATAGCTCTCCATGTACAAGTGGCGCAACTCGGGAC
TCTTGTAGAATCTATCTTGTAGAGGGACACTCCAGAGAGTTCAGAGAATG
GATCAACGTGATAAAATATTTGTGTGTGTGTTGTACCGTGCTGTGACGCA
CTTCCCTCATACTCTTGAAAACATGATGATTCTTTGGTGATGAAACAAGT
CAGCCCGCCGTGGGTATGGTGTGACACGGATGAATTGTGAAAGGAGCGGG
GTAGCAACCCGCCGTCCCTCCGCAACGTTTTTTTCCAGGTTTTGGGACAA
AATCCGGTTGTAAAATCATGCTCCACACCGTGCAGCTGTCCCTCCAAGTA
TGGAGCCGATTCCTTGAGTGCCATGCGCGCCTGTAGCTCATCGTTTTCAT
TGCATAACAAAACCTAGGAAGCTCCCCCTTGATCTCGTCTGGACATCTTT
CAGGACAGCATCCCACAAAACATGCGTGAAGTAGCTAGCCCTCGGCTGAT
ACCCGGGGCAGGGAACGCGGTGCAGCTTCGCCGGGCGTTTTAATTCCGTG
TGACACTGGCTGTCTTGAAGAGCAGGAGGCTTTGCTTCGGTTCTAGAACG
TGTATTGCAAATATATTTGAAAACATGTCTGTCCCATGCTTGGCGTTCAA
ATGCGGGTGTTCATGTCACATGATGTTAATATGCCGTGGTGATGGGTCTC
GCTGCAGATATTTTTGGGGATATCGCGCTTGGATTGTACCTGGTGCGAGG
GGATGCGCTAGTCCTCATGGGGGAGCTTGATGAAGCTTTGGAAGAAACGC
CGAGGCTCAAGAAAGTCTCGGCAGACGAGATCATCGAAGCGCAGCAGGAG
GCTTCCGCGGAGGAGCGTCAAGACGCCAAGCTTGATTGGCTGTTTCAGGA
CGCATCCTAGCTCTTAGCAGAAACACACGGACAGAACACATAACAGAGAG
CGAGCGAGGCGAGAGTGACTCCCCAAGTGTGCTATCGTCATGAGACCAGA
TGATGCACACGGGGCGGGTGTACGCGAATGTACAGAGAGGCCAATATACA
TGCATATTCCCCGACGAAGGGTTGGGATGCTTCCGATTTGCAAGCGTGGT
TCCCGCACGACCGCGAAATAGCACTATCCTCGGATATGCATGCTGAAATG
TCAAGAGCGAGGAATTGACTTGGTGGATTTCATCCCCCATGCAATGCTAC
TTTTCGTACGCTCAACCCTTTTGCCTAGAATGCTTTTATCCCCTCTCCCG
TTTCCCCCTGCCGCCATGTGGGTGTGGTGGAAAAGCTGCTTCGAAATATA
TATATATCTATATATATATATATATATACATCTATATATATATATATATG
CTTAAGCCATCGTGTGCCCTCCGTCTCTTTGTGCTAGGATAGTGCCCTAT
TGGGTCCTGTTTGGATAGACCGCTGAACCTGTTCGGACGAACGCGTCTAT
ATTTTTCAGGTGTTTGTTTCGACTTTGCTCGTGTTTGGTGTTGGAAGTGA
ACAACTTCTTGTGTCTGTCAGTGGGTCTGTCTGTCTGTCTGTCGCTCTGT
CTGTCGCTCTGTCGCTCTGTCTTGTGTGTGTTGTTGGATTTTCATGGCCC
GAGCCGTAAACAAGAGTCACGCTATGGTAGGTTGGTAGTAGGTGGGTATA
GTGGGTAGCATATTATGATATGATGCCAGATTTGAATCGAAAAGAGAGAA
ATGGAGATTGGCGAGATAGCAAGCACTCGTAACCCGACAATACAAATAGG
GGAGGTTGTCGCCAAGATATAGTTAGTTGAGCGGTTGTGCGCCGACCACG
TGGGCTTTGTGGCTGACTTACAGTACGTGTTCGTTGCTGTAGATAGGGTA
TTTTTATTGTTCCCCGCTGTCGGCCCAATTCATTTTTATTTTTGTACTGG
TTATAATTTACAACAAGCCAGAAGTATTTACGGTCCATGTTGAAATATTT
TATTACTGTAGGATATGCTTCTGCTTGGACGTCATCACGTGAGATGCTTC
AGCTTTGTACGTTTATGATTCAGATGTGATGTGCGTTTTTTGCTGTTTTC
AGCTTAGCCTCGTGGGCACTAACTCCTATACGACTGCTTTCAAGTCTACG
TTGTTTTGGTGAGTAATTTTTTTTCCTGTGGAATCGTGAGACCAGGGTTG
CAAATAATGGGTAGGGTAACCAGTTTGGCCAATGCAGGGCAAACATCTGT
ACGCACGGTTTGTTTGATGCGAGCTGCCCTTGTGTTTTGTCCGGCCTATC
GTTGCGGTTGTTTACTGTTTGTTGGTGGTCGTTGTCATTTTTTTGGAAAG
CATACAGTACATACACATACTATGATGGTGCCTGCGAGTAGTGAACTATA
GTATAGAAGAAAATAATTATCTTTGCAAAACAGCTGAATAAAGGAGTATT
TTTGGGTTCGAAATGTGTTCTTTTGATTTACAGTTGATGTTACTACATAC
TTGGGATCTATGTGTCTGTATCAATCTGACTTCTACATGGAAATAATGAC
TGGCGTTTGATACAGTGATGGTGCTGGGGCGAGTTGTCCCCCATACGCCG
AAGACGCTTGATGCCCTGCATTCGTTATGTCGAGTGTTCAATAAACCGCT
GCTGTATCTGGAGTATCGACACAGTGACTGTTGTGGAAGGTCGGTCGAGT
AGGTATTTCTCATGAGTCAAGGTAATAATGAACAAAAATAATAGATGAGA
G back to topCoding sequence (CDS) from alignment at H-paniculata_contig227:6513..16763+ >mRNA_H-paniculata_contig227.6042.1 ID=mRNA_H-paniculata_contig227.6042.1|Name=mRNA_H-paniculata_contig227.6042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1500bp|location=Sequence derived from alignment at H-paniculata_contig227:6513..16763+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGTCTCCCTCTACCGCGCTGTACCCCCGTCGCCGCAGTCAGTTCCG
CACCCGCATAGAGACCACAACCATGGCCGAGGCAGCAGCCAGAGGCCCGA
GCAGAGGCTCATTGCAACAGCAGCAGCCACCACCACAACAACAGCAGCAA
CAACAACAACAATATTACCAACAGACACAACAAGCTCAACACTCACTACA
ACAGCAGCAGCTGCATGGACAGGGGACAGGAGCAGGGGGGGGGGTGGTGG
ATGGCCCGGTTGCGGGCGCGCGAAGCTCCCATCTGCGAACACCACATCCA
CCTCCCGTGGGTGTGGTGTTTCCACCAAGAATGGGACTTCCTGGGCCTGG
GGTTGGCTACCACCCGCCGCCGCCACCTCCGCCCCCACCGGCCTTTTTCC
CGGGATCGGCCAGTTTGTTCGAGCAGCTCGACAAGAAGGTCATGATGCAG
TCTCCCTCTACCGCGCTGTACCCCCGTCGCCGCAGTCAGTTCCGCACCCG
CATAGAGACCACAACCATGGCCGAGGCAGCAGCCAGAGGCCCGAGCAGAG
GCTCATTGCAACAGCAGCAGCCACCACCACAACAACAGCAGCAACAACAA
CAACAATATTACCAACAGACACAACAAGCTCAACACTCACTACAACAGCA
GCAGCTGCATGGACAGGGGACAGGAGCAGGGGGGGGGGTGGTGGATGGCC
CGGTTGCGGGCGCGCGAAGCTCCCATCTGCGAACACCACATCCACCTCCC
GTGGGTGTGGTGTTTCCACCAAGAATGGGACTTCCTGGGCCTGGGGTTGG
CTACCACCCGCCGCCGCCACCTCCGCCCCCACCGGCCTTTTTCCCGGGAT
CGGCCAGTTTGTTCGAGCAGCTCGACAAGAAGGTCATGGTGGTTCTGCGC
GACGGGCGACATCTTGTAGGGGTCATGAGGAGCTACGACCAGTTTTCAAA
CATCGTACTGGAGGACACACACGAACGACACTTTGTGGGGAGTGGTTCTG
CGCGACGGGCGACATCTTGTAGGGGTCATGAGGAGCTACGACCAGTTTTC
AAACATCGTACTGGAGGACACACACGAACGACACTTTGTGGGGAATATTT
TTGGGGATATCGCGCTTGGATTGTACCTGGTGCGAGGGGATGCGCTAGTC
CTCATGGGGGAGCTTGATGAAGCTTTGGAAGAAACGCCGAGGCTCAAGAA
AGTCTCGGCAGACGAGATCATCGAAGCGCAGCAGGAGGCTTCCGCGGAGG
AGCGTCAAGACGCCAAGCTTGATTGGCTGTTTCAGGACGCATCCTAGATA
TTTTTGGGGATATCGCGCTTGGATTGTACCTGGTGCGAGGGGATGCGCTA
GTCCTCATGGGGGAGCTTGATGAAGCTTTGGAAGAAACGCCGAGGCTCAA
GAAAGTCTCGGCAGACGAGATCATCGAAGCGCAGCAGGAGGCTTCCGCGG
AGGAGCGTCAAGACGCCAAGCTTGATTGGCTGTTTCAGGACGCATCCTAG back to top
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