mRNA_H-paniculata_contig22698.6041.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22698.6041.1
Unique NamemRNA_H-paniculata_contig22698.6041.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22698.6041.1 vs. uniprot
Match: D8LD01_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD01_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.050e-11
Identity = 58/129 (44.96%), Postives = 72/129 (55.81%), Query Frame = 1 
Query:  235 RVQLAGEALTTGIGIVIGGATVIAVGRGLTTLASAFNLADYRTTSGHDLRLNDRRLHTQCRRNIHPLTGRILPVPAASSMDDCSRGAILSSFVGEVTEEEEEVVDWREEVRRASRLPDVKSDPVAESGS 621
            ++ L  EAL  G   VI GA +I  GRGL+TLA AF LADYRTTSGHDLRL D +L ++ RR + P +       + S      RGA  ++   E         DWREE+R AS+LPD   D V   GS
Sbjct:   69 QLALESEALAVGAA-VIAGAAIIGAGRGLSTLAGAFKLADYRTTSGHDLRL-DEKLGSK-RRRLDPSS----ETTSGSLESTGGRGASETALGVET--------DWREEIRLASQLPD---DSVVFGGS 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22698.6041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD01_ECTSI1.050e-1144.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22698contigH-paniculata_contig22698:497..3337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001730.1
Exons3
Model size1163
Cds size621
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22698.6041.1prot_H-paniculata_contig22698.6041.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22698 1012..3310 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929630.7337134-UTR-H-paniculata_contig22698:496..10111622929630.7337134-UTR-H-paniculata_contig22698:496..1011Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22698 497..1011 -
1691480943.343521-UTR-H-paniculata_contig22698:496..10111691480943.343521-UTR-H-paniculata_contig22698:496..1011Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22698 497..1011 -
1622929630.7914407-UTR-H-paniculata_contig22698:3310..33371622929630.7914407-UTR-H-paniculata_contig22698:3310..3337Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22698 3311..3337 -
1691480943.3755171-UTR-H-paniculata_contig22698:3310..33371691480943.3755171-UTR-H-paniculata_contig22698:3310..3337Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22698 3311..3337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929630.7503288-CDS-H-paniculata_contig22698:1011..12911622929630.7503288-CDS-H-paniculata_contig22698:1011..1291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22698 1012..1291 -
1691480943.3522692-CDS-H-paniculata_contig22698:1011..12911691480943.3522692-CDS-H-paniculata_contig22698:1011..1291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22698 1012..1291 -
1622929630.7671046-CDS-H-paniculata_contig22698:2268..23621622929630.7671046-CDS-H-paniculata_contig22698:2268..2362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22698 2269..2362 -
1691480943.3598657-CDS-H-paniculata_contig22698:2268..23621691480943.3598657-CDS-H-paniculata_contig22698:2268..2362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22698 2269..2362 -
1622929630.780898-CDS-H-paniculata_contig22698:3063..33101622929630.780898-CDS-H-paniculata_contig22698:3063..3310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22698 3064..3310 -
1691480943.3675842-CDS-H-paniculata_contig22698:3063..33101691480943.3675842-CDS-H-paniculata_contig22698:3063..3310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22698 3064..3310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22698.6041.1

>prot_H-paniculata_contig22698.6041.1 ID=prot_H-paniculata_contig22698.6041.1|Name=mRNA_H-paniculata_contig22698.6041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
MSRYRPLRLFHVITVIFLSVRLSQAFYMSGKLTVRLSAACLRYTDSTFAR
ACVGQNRQASSRSNWSRRGRVQLAGEALTTGIGIVIGGATVIAVGRGLTT
LASAFNLADYRTTSGHDLRLNDRRLHTQCRRNIHPLTGRILPVPAASSMD
DCSRGAILSSFVGEVTEEEEEVVDWREEVRRASRLPDVKSDPVAESGSNK
DIIFRE*
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mRNA from alignment at H-paniculata_contig22698:497..3337-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22698.6041.1 ID=mRNA_H-paniculata_contig22698.6041.1|Name=mRNA_H-paniculata_contig22698.6041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2841bp|location=Sequence derived from alignment at H-paniculata_contig22698:497..3337- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTCCCAGTCCGACCTATCAGTTGTGATGTCCAGATATCGCCCCCTCCG
ACTCTTCCACGTAATCACTGTGATCTTCTTGAGTGTTCGACTGTCTCAGG
CATTCTATATGAGTGGAAAACTTACCGTTCGCCTCAGTGCAGCATGTCTG
AGATACACGGATTCAACATTTGCGCGAGCATGTGTCGGGCAAAATCGCCA
AGCAAGTTCAAGGAGCAATTGGTCACGGCGGGGCCGTGTTCAGCTCGCCG
GCGAAGCCTTGACGACTGGTATAGGTGAGTGTTCATCGATATGGAATGGA
TTATTGAGCTCTCGAACAAATAATGCTTTTAATAACTCGAAAAGTGGGTG
GGATCATGAGAAGGCCCACATACCCTAGTCAGTACAATTGTGACTGTTCA
ATTAAGCACGGTTTTACTGTACTATGTACTGTTTCTGGACCTCAAGCGCA
GTCGGTACTGCTCGTGGTGAGCGCTAGAAGTCATAGAGCCGTATGGTAAC
TGTCTAACTGGTCCAGAGATAGCGTATCATCTGTTTGTAGAATAGAATGG
CAAGGCATTGGGGGTACTCCGCGTGGGTTAAGGATGTCGACGAGGAAATC
GTTTCTCATGACAACGCGCTGTTTTCAGGTTCATGTGCTTATAACGATCG
CCTGGAGTGCGCGTATCACTGCCCCGCAGTTGTGAGATTCTTCGCTCATG
CCTATGTGCACCCCCTCACCATCCAGTTAAGCCTGCCATGCGAAACGTGA
GTTTTACGCGTCACCTATCTTCCACCCAAAATCCCAACCGAAACGGGCAC
GACGGCCCCTGAAGATATGTTGGTTTGGGATTGCGGCAAACGGAACAGCG
TCAGCGTTTTCGGGCTGGGAGCTAGCTAGTTCTGGTTTTCTTATGCATCT
GTTGTCAGGTCTAATCATGCCCACTTCGTCCATGCCCATCGAGCGCGCTC
GTGTGTAAATTTTCTTGCGGAAAAGGTATTGTGATCGGGGGAGCCACGGT
AATTGCGGTAGGTCGAGGACTGACCACCTTAGCTAGCGCGTTTAATCTCG
CGGACTATCGGACCACGAGGTGAGAATATGCACAACAAAACCTGAAAGTA
TTCCTCTCGCCCCAGAGGTGTTTAGATTCGGTGTCGCTCAAGTGTATCAC
CAGGAAGGAGTTATCAGGCGATACTCGGAAGTGGGGATCAACTTTCTTGT
TGGGATTGATGTTCCGTTGAATTTGAATGGAATGTTTCGAAAATGGTGCT
TGACAAAGGCACTTTCCGGGGAGAGTCAGTGTCCAATAAGAACGTTGATC
CTCAATCCCGAGTACCGCCTTTTAGTTGCGTTTTTATCGACGCTTGGCTG
CCTTGGACCACCCTGATCGAAGCGTAGTGGGCTCTCCGTAATTTGATACA
CGCGTGGCCAGAGGGGTACCTTGTTGCGGATATTGCGACGTCCACGCTGT
GGTGAGGTTGGCAATGTTTACACTACGTACTACGACGTTGTGGTGAGGTT
GACAATGTTTATACAACATCTTAATACGTTTTATGCACATTGTCAACCTC
ACCGCAACGTGCGACGTTGTAATATCCGCAACAAGATATTCACAAGGTGC
CCTCTGGCCACATGTGTAGGTCTTGTGCTGTGCGACGTCGTGAATGCCGA
CGTCGTAGGCTACTCTCTAGACCACGCGCACCGTCTCCGAATCTAAATGC
AGTATATTTACAATTGTGTGTAAAATTACAGAATTTTTGGATTTCCAAAG
TATGCTTGTGGCATCATTATCATCGCGTATGATCAATAAATGACAAGTCG
TGTGAATGGTGGCATGTAGATACATTCCTAGATATGTGCAGCGAGAAAAA
CATTGAAACTGGAAAGTAATGAGGCAGCCAAACAACCGAAAACACCATGG
CCTCACCCCGCGGATGTTTCTCCATGATTTATCTCCCATCCGTTCGTCCA
CTACCACGGCCTATGCTTGCAAACGTCTTCCTCTCTCCCCCACAACGCAT
TCGGGTGATGAACGGTGATGCCCTTCCCCGCGCGGCCAAACAAAAGTGGG
CACGACCTTCGCCTAAACGACCGAAGGTTACATACCCAATGCCGAAGGAA
CATCCACCCTCTCACCGGAAGGATTCTTCCCGTACCTGCTGCTTCGAGTA
TGGACGATTGTAGTCGTGGAGCAATTCTCAGCTCCTTTGTTGGTGAAGTC
ACGGAAGAGGAGGAGGAAGTGGTGGATTGGCGGGAGGAGGTTCGACGAGC
ATCGCGCTTGCCCGACGTTAAGAGCGATCCCGTTGCGGAGAGTGGATCGA
ACAAGGATATCATTTTTCGAGAATAGAGTTGGGACATGTGCAGCAGGGAG
TATCACAGTGCAGATAACGGTATGCGTGTTGTCACGGTGGGCCGAGAGGG
GACACAGCGGCGCTATTGTAAATTGCGTTTCTCACTAACTAAAGCGCAAG
TCGGGACCTTTTTGTTCGGCCGAACAGAGTGTTAGGGGACGATTTGGTTG
CTCAGTGATGTAGAGAGCGTCATACATCAGAAGCTTATCATGCAATCAGG
TCTGCACATCGGTGTAGGATAACGTTTGGCGTGCAAGGTGGAGGGATGAA
GGGCACTGTGACCCAATGAGTTACCCTAACGTCATCCGGTGCGCTTCTTG
CCGAGACGTAAAGTTGCGTGTGTGTATAGCTTTTGCTTGTCTAGGCTGTA
CAGGAATCCATCTCATTATACGAATGTGATGAACAGGGTTGGGTACCAAA
ACCGTGTACACGACGTCATCTTGTTTCACGTCGAAAGTTTGTAAATAGCA
TTACAATAACTAAATGCGCACTCATTACTCAGTAGCCTGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig22698:497..3337-

>mRNA_H-paniculata_contig22698.6041.1 ID=mRNA_H-paniculata_contig22698.6041.1|Name=mRNA_H-paniculata_contig22698.6041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig22698:497..3337- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCAGATATCGCCCCCTCCGACTCTTCCACGTAATCACTGTGATCTT
CTTGAGTGTTCGACTGTCTCAGGCATTCTATATGAGTGGAAAACTTACCG
TTCGCCTCAGTGCAGCATGTCTGAGATACACGGATTCAACATTTGCGCGA
GCATGTGTCGGGCAAAATCGCCAAGCAAGTTCAAGGAGCAATTGGTCACG
GCGGGGCCGTGTTCAGCTCGCCGGCGAAGCCTTGACGACTGGTATAGATG
TCCAGATATCGCCCCCTCCGACTCTTCCACGTAATCACTGTGATCTTCTT
GAGTGTTCGACTGTCTCAGGCATTCTATATGAGTGGAAAACTTACCGTTC
GCCTCAGTGCAGCATGTCTGAGATACACGGATTCAACATTTGCGCGAGCA
TGTGTCGGGCAAAATCGCCAAGCAAGTTCAAGGAGCAATTGGTCACGGCG
GGGCCGTGTTCAGCTCGCCGGCGAAGCCTTGACGACTGGTATAGGTATTG
TGATCGGGGGAGCCACGGTAATTGCGGTAGGTCGAGGACTGACCACCTTA
GCTAGCGCGTTTAATCTCGCGGACTATCGGACCACGAGGTATTGTGATCG
GGGGAGCCACGGTAATTGCGGTAGGTCGAGGACTGACCACCTTAGCTAGC
GCGTTTAATCTCGCGGACTATCGGACCACGAGTGGGCACGACCTTCGCCT
AAACGACCGAAGGTTACATACCCAATGCCGAAGGAACATCCACCCTCTCA
CCGGAAGGATTCTTCCCGTACCTGCTGCTTCGAGTATGGACGATTGTAGT
CGTGGAGCAATTCTCAGCTCCTTTGTTGGTGAAGTCACGGAAGAGGAGGA
GGAAGTGGTGGATTGGCGGGAGGAGGTTCGACGAGCATCGCGCTTGCCCG
ACGTTAAGAGCGATCCCGTTGCGGAGAGTGGATCGAACAAGGATATCATT
TTTCGAGAATAGTGGGCACGACCTTCGCCTAAACGACCGAAGGTTACATA
CCCAATGCCGAAGGAACATCCACCCTCTCACCGGAAGGATTCTTCCCGTA
CCTGCTGCTTCGAGTATGGACGATTGTAGTCGTGGAGCAATTCTCAGCTC
CTTTGTTGGTGAAGTCACGGAAGAGGAGGAGGAAGTGGTGGATTGGCGGG
AGGAGGTTCGACGAGCATCGCGCTTGCCCGACGTTAAGAGCGATCCCGTT
GCGGAGAGTGGATCGAACAAGGATATCATTTTTCGAGAATAG
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