mRNA_H-paniculata_contig22697.6040.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22697.6040.1
Unique NamemRNA_H-paniculata_contig22697.6040.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22697.6040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22697contigH-paniculata_contig22697:828..1366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size182
Cds size132
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22697.6040.1prot_H-paniculata_contig22697.6040.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22697 862..1350 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929630.6468365-UTR-H-paniculata_contig22697:827..8611622929630.6468365-UTR-H-paniculata_contig22697:827..861Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22697 828..861 +
1691480943.299073-UTR-H-paniculata_contig22697:827..8611691480943.299073-UTR-H-paniculata_contig22697:827..861Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22697 828..861 +
1622929630.6937828-UTR-H-paniculata_contig22697:1350..13661622929630.6937828-UTR-H-paniculata_contig22697:1350..1366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22697 1351..1366 +
1691480943.3276052-UTR-H-paniculata_contig22697:1350..13661691480943.3276052-UTR-H-paniculata_contig22697:1350..1366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22697 1351..1366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929630.6627085-CDS-H-paniculata_contig22697:861..9761622929630.6627085-CDS-H-paniculata_contig22697:861..976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22697 862..976 +
1691480943.3086092-CDS-H-paniculata_contig22697:861..9761691480943.3086092-CDS-H-paniculata_contig22697:861..976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22697 862..976 +
1622929630.6793647-CDS-H-paniculata_contig22697:1333..13501622929630.6793647-CDS-H-paniculata_contig22697:1333..1350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22697 1334..1350 +
1691480943.3179739-CDS-H-paniculata_contig22697:1333..13501691480943.3179739-CDS-H-paniculata_contig22697:1333..1350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22697 1334..1350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22697.6040.1

>prot_H-paniculata_contig22697.6040.1 ID=prot_H-paniculata_contig22697.6040.1|Name=mRNA_H-paniculata_contig22697.6040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
MRRHLFSLQTRTKWSQSMTSWTTARPCGRSFGEAANAPGEVQL*
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mRNA from alignment at H-paniculata_contig22697:828..1366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22697.6040.1 ID=mRNA_H-paniculata_contig22697.6040.1|Name=mRNA_H-paniculata_contig22697.6040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=539bp|location=Sequence derived from alignment at H-paniculata_contig22697:828..1366+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCCCAGCATTCGTCACGCGCGCGACGCACGCATGCGCAGACATCTGT
TCAGCCTACAGACGAGAACTAAATGGTCACAGTCGATGACCTCATGGACG
ACAGCCAGACCGTGCGGCCGGTCGTTTGGAGAAGCTGCAAATGCGCCAGG
TGAACAGGACCATGGCTGACGCGGAGTTAATCGCCCTCTACTTGGTCCTT
TTCCCAATAAATCAGCCCGCAGCATCGGTCCAGACCTTGATTGCCCTTTT
AACGCGTATCTCATCAGCACCATATGGAGAATATTGCAACACTGATGTCG
TTTTTGGTCCGTGTACATTACAGGCATCCTTCAAGAAAATCCCTCTCGGA
ATAAACAAATATCCTGAATTCATCAACCTCCAATTTCTTGAGCTGTGTCG
TGTACGTGACTGTATGGGAGAAAATTGTGTGTTTGTTGCTGACGATAATA
GTCCAATCCGTGTCCTGCCGTGTCCCCATGGGATAAATTTCTTGCTGCTG
TGCCAGGTGAAGTACAACTGTAAACAGGGCGACTGCGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig22697:828..1366+

>mRNA_H-paniculata_contig22697.6040.1 ID=mRNA_H-paniculata_contig22697.6040.1|Name=mRNA_H-paniculata_contig22697.6040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig22697:828..1366+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCAGACATCTGTTCAGCCTACAGACGAGAACTAAATGGTCACAGTC
GATGACCTCATGGACGACAGCCAGACCGTGCGGCCGGTCGTTTGGAGAAG
CTGCAAATGCGCCAGATGCGCAGACATCTGTTCAGCCTACAGACGAGAAC
TAAATGGTCACAGTCGATGACCTCATGGACGACAGCCAGACCGTGCGGCC
GGTCGTTTGGAGAAGCTGCAAATGCGCCAGGTGAAGTACAACTGTAAGTG
AAGTACAACTGTAA
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