mRNA_H-paniculata_contig22692.6038.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22692.6038.1
Unique NamemRNA_H-paniculata_contig22692.6038.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22692.6038.1 vs. uniprot
Match: A0A6H5J820_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J820_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 8.090e-10
Identity = 42/86 (48.84%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  532 AVEEVGIRTSMSTGNRWVIGRRVKGDDGTGRGTGLVGSNINGNCRQHAGWATSAGKGQGGELFAMVEAPILSVGDARAAAERLFLG 789
            A  E+GIRTSMS GNRWVIGRR+ G+ G+G  + L                       G EL+A +EAP+LSVGDARAAA R+F G
Sbjct:  250 AAREIGIRTSMSKGNRWVIGRRLAGESGSGGRSRL-----------------------GHELYATIEAPVLSVGDARAAASRVFSG 312
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BLAST of mRNA_H-paniculata_contig22692.6038.1 vs. uniprot
Match: D7G5K6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K6_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.480e-9
Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:  532 AVEEVGIRTSMSTGNRWVIGRRVKGDDGTGRGTGLVGSNINGNCRQHAGWATSAGKGQGGELFAMVEAPILSVGDARAAAERLFLG 789
            A  E+GIRTSMS GNRWVIGRR+ G+ G G G   +G                       E++A +EAP+LSVGDARAAA R+F G
Sbjct: 1043 AAREIGIRTSMSKGNRWVIGRRLAGESGGGGGRSRLGH----------------------EVYATIEAPVLSVGDARAAASRVFSG 1106
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22692.6038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J820_9PHAE8.090e-1048.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5K6_ECTSI2.480e-947.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22692contigH-paniculata_contig22692:2303..3736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1436
Cds size870
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929630.523412-CDS-H-paniculata_contig22692:2302..31721622929630.523412-CDS-H-paniculata_contig22692:2302..3172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22692 2303..3172 +
1691480943.2417006-CDS-H-paniculata_contig22692:2302..31721691480943.2417006-CDS-H-paniculata_contig22692:2302..3172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22692 2303..3172 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929630.5360463-UTR-H-paniculata_contig22692:3172..37361622929630.5360463-UTR-H-paniculata_contig22692:3172..3736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22692 3173..3736 +
1691480943.2520838-UTR-H-paniculata_contig22692:3172..37361691480943.2520838-UTR-H-paniculata_contig22692:3172..3736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22692 3173..3736 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22692.6038.1prot_H-paniculata_contig22692.6038.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22692 2303..3172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22692.6038.1

>prot_H-paniculata_contig22692.6038.1 ID=prot_H-paniculata_contig22692.6038.1|Name=mRNA_H-paniculata_contig22692.6038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=290bp
EGCAACSGGGGEAELKRGGGWLLPVGGGNGQQQGEGFKALVEAFARRGRP
ELGVEELRWRSPEKGQQQLAALDDIHASLRDPQGSSLGSERKDLAASARR
ETSLRIGLREPPAEGEGADAEKNNNNPNGDSSNNGSSNLSGRAGSRPPSG
ETWSANEDDAEQRSVHGLLATKAHRPLAVEEVGIRTSMSTGNRWVIGRRV
KGDDGTGRGTGLVGSNINGNCRQHAGWATSAGKGQGGELFAMVEAPILSV
GDARAAAERLFLGRDGNSGANARDAAERSNDRTLASRLR*
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mRNA from alignment at H-paniculata_contig22692:2303..3736+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22692.6038.1 ID=mRNA_H-paniculata_contig22692.6038.1|Name=mRNA_H-paniculata_contig22692.6038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1434bp|location=Sequence derived from alignment at H-paniculata_contig22692:2303..3736+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGGTTGTGCAGCGTGCAGTGGCGGTGGAGGCGAGGCTGAGTTGAAGCG
AGGTGGTGGGTGGTTGTTGCCGGTTGGTGGGGGGAATGGGCAGCAACAAG
GGGAGGGCTTTAAAGCTCTGGTAGAGGCGTTCGCGAGACGGGGACGGCCG
GAGTTAGGTGTGGAGGAGTTGCGGTGGCGGTCGCCGGAAAAGGGGCAGCA
GCAGTTGGCCGCTCTCGATGACATCCACGCGTCGTTGCGAGATCCACAAG
GATCTTCTCTTGGTTCGGAGAGGAAGGATTTGGCGGCTAGTGCTCGGCGG
GAAACCAGTCTGCGGATTGGTCTTCGGGAACCCCCCGCAGAAGGAGAGGG
AGCTGATGCGGAGAAAAACAATAACAACCCCAACGGCGACAGCAGCAACA
ACGGCAGCAGTAACTTATCAGGGAGAGCAGGAAGCAGACCACCATCAGGA
GAAACATGGAGTGCAAACGAAGATGATGCTGAGCAAAGGTCAGTTCATGG
CTTACTGGCGACAAAGGCGCATCGCCCCCTAGCTGTGGAGGAAGTCGGCA
TAAGAACATCCATGTCCACCGGCAACCGATGGGTCATCGGTAGGCGCGTG
AAGGGAGATGATGGGACCGGGCGCGGGACAGGCTTAGTAGGGAGTAATAT
CAACGGGAATTGTAGACAACATGCTGGGTGGGCGACTAGTGCAGGAAAAG
GTCAGGGTGGAGAATTGTTCGCCATGGTAGAGGCGCCGATTTTGTCCGTG
GGAGATGCCCGGGCTGCCGCGGAGAGGCTGTTTCTCGGGAGAGATGGCAA
CAGCGGCGCCAATGCCCGTGATGCTGCGGAGAGAAGTAATGATCGCACGT
TGGCAAGCCGATTGCGTTGATGAGGAGTGAAAAGGGTGTACCCTGTCAAT
ATCTAGCACTTCATGGGATAGGGAGATCAGTTGTCATCCATCGTACTGAG
CTAGGGGGCTTACCCTCTAAAAATCTTGGAATTACATGGTTGTTCGTACA
TACGATGGTAGATGACTTGTGGTAGGATATGCAGTTCTGTCTTTAGACCC
GGCGTTTCGGAATTCGTCACAGTCGAGGTACTTGAAAATGTAAATTTCAT
GGCAAACAGTTGGATGTATTGTGCTCTTGCGTAGACAATCCCCGAACTTC
GACAAAAGCCTCGGGTTACAGCGAGCCAGTATTCATTTTGTGAATGGAAG
AAGCCGAGGGAGTAAAGTGCAACCCTGTACGCGAGACAGGGGATATATCT
GGTGCGACCGGAGTGATGATTATTCTGCGTGCGAGCAATGTTCACCCTTA
ATAGATTGCTACGATATGTACATATCAGTGAAAAAGACGGATGGTACACG
AGGCAAAGGCCGCGACCGGTATGATACCGTATGAAATAGCAAGAAAGACT
GAACAGGGGAGAAATGAATAACATCAAAATTGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig22692:2303..3736+

>mRNA_H-paniculata_contig22692.6038.1 ID=mRNA_H-paniculata_contig22692.6038.1|Name=mRNA_H-paniculata_contig22692.6038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1740bp|location=Sequence derived from alignment at H-paniculata_contig22692:2303..3736+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGGTTGTGCAGCGTGCAGTGGCGGTGGAGGCGAGGCTGAGTTGAAGCG
AGGTGGTGGGTGGTTGTTGCCGGTTGGTGGGGGGAATGGGCAGCAACAAG
GGGAGGGCTTTAAAGCTCTGGTAGAGGCGTTCGCGAGACGGGGACGGCCG
GAGTTAGGTGTGGAGGAGTTGCGGTGGCGGTCGCCGGAAAAGGGGCAGCA
GCAGTTGGCCGCTCTCGATGACATCCACGCGTCGTTGCGAGATCCACAAG
GATCTTCTCTTGGTTCGGAGAGGAAGGATTTGGCGGCTAGTGCTCGGCGG
GAAACCAGTCTGCGGATTGGTCTTCGGGAACCCCCCGCAGAAGGAGAGGG
AGCTGATGCGGAGAAAAACAATAACAACCCCAACGGCGACAGCAGCAACA
ACGGCAGCAGTAACTTATCAGGGAGAGCAGGAAGCAGACCACCATCAGGA
GAAACATGGAGTGCAAACGAAGATGATGCTGAGCAAAGGTCAGTTCATGG
CTTACTGGCGACAAAGGCGCATCGCCCCCTAGCTGTGGAGGAAGTCGGCA
TAAGAACATCCATGTCCACCGGCAACCGATGGGTCATCGGTAGGCGCGTG
AAGGGAGATGATGGGACCGGGCGCGGGACAGGCTTAGTAGGGAGTAATAT
CAACGGGAATTGTAGACAACATGCTGGGTGGGCGACTAGTGCAGGAAAAG
GTCAGGGTGGAGAATTGTTCGCCATGGTAGAGGCGCCGATTTTGTCCGTG
GGAGATGCCCGGGCTGCCGCGGAGAGGCTGTTTCTCGGGAGAGATGGCAA
CAGCGGCGCCAATGCCCGTGATGCTGCGGAGAGAAGTAATGATCGCACGT
TGGCAAGCCGATTGCGTTGAGAAGGTTGTGCAGCGTGCAGTGGCGGTGGA
GGCGAGGCTGAGTTGAAGCGAGGTGGTGGGTGGTTGTTGCCGGTTGGTGG
GGGGAATGGGCAGCAACAAGGGGAGGGCTTTAAAGCTCTGGTAGAGGCGT
TCGCGAGACGGGGACGGCCGGAGTTAGGTGTGGAGGAGTTGCGGTGGCGG
TCGCCGGAAAAGGGGCAGCAGCAGTTGGCCGCTCTCGATGACATCCACGC
GTCGTTGCGAGATCCACAAGGATCTTCTCTTGGTTCGGAGAGGAAGGATT
TGGCGGCTAGTGCTCGGCGGGAAACCAGTCTGCGGATTGGTCTTCGGGAA
CCCCCCGCAGAAGGAGAGGGAGCTGATGCGGAGAAAAACAATAACAACCC
CAACGGCGACAGCAGCAACAACGGCAGCAGTAACTTATCAGGGAGAGCAG
GAAGCAGACCACCATCAGGAGAAACATGGAGTGCAAACGAAGATGATGCT
GAGCAAAGGTCAGTTCATGGCTTACTGGCGACAAAGGCGCATCGCCCCCT
AGCTGTGGAGGAAGTCGGCATAAGAACATCCATGTCCACCGGCAACCGAT
GGGTCATCGGTAGGCGCGTGAAGGGAGATGATGGGACCGGGCGCGGGACA
GGCTTAGTAGGGAGTAATATCAACGGGAATTGTAGACAACATGCTGGGTG
GGCGACTAGTGCAGGAAAAGGTCAGGGTGGAGAATTGTTCGCCATGGTAG
AGGCGCCGATTTTGTCCGTGGGAGATGCCCGGGCTGCCGCGGAGAGGCTG
TTTCTCGGGAGAGATGGCAACAGCGGCGCCAATGCCCGTGATGCTGCGGA
GAGAAGTAATGATCGCACGTTGGCAAGCCGATTGCGTTGA
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