mRNA_H-paniculata_contig22673.6034.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22673.6034.1
Unique NamemRNA_H-paniculata_contig22673.6034.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22673.6034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22673contigH-paniculata_contig22673:1454..1954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929629.8694472-CDS-H-paniculata_contig22673:1453..19541622929629.8694472-CDS-H-paniculata_contig22673:1453..1954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22673 1454..1954 +
1691480942.8346999-CDS-H-paniculata_contig22673:1453..19541691480942.8346999-CDS-H-paniculata_contig22673:1453..1954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22673 1454..1954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22673.6034.1prot_H-paniculata_contig22673.6034.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22673 1454..1954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22673.6034.1

>prot_H-paniculata_contig22673.6034.1 ID=prot_H-paniculata_contig22673.6034.1|Name=mRNA_H-paniculata_contig22673.6034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
QKAWITQITTCKGMALTIVQSTESSREAFMKLQKHYRASGLEEKSLLLHE
LKSLRMEPGEEPTNFLLWMDRVANDLERLGRTIDEDAGNLAIMNGLSPEY
DIERRMIESSDDAPNRARIETIIANQYNRLQQQKVEAGTEALAVTLKGTA
ETCQLCNKLGHAAPQCR
back to top

mRNA from alignment at H-paniculata_contig22673:1454..1954+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22673.6034.1 ID=mRNA_H-paniculata_contig22673.6034.1|Name=mRNA_H-paniculata_contig22673.6034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=501bp|location=Sequence derived from alignment at H-paniculata_contig22673:1454..1954+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAGGCGTGGATCACACAAATCACCACCTGCAAAGGAATGGCATTGAC
GATCGTCCAGAGCACCGAGTCGTCGCGTGAGGCGTTCATGAAGCTCCAAA
AGCACTACCGCGCCAGCGGCCTTGAAGAGAAATCACTTCTGCTGCACGAA
TTGAAATCCCTAAGGATGGAGCCCGGGGAAGAACCCACAAATTTCCTTTT
GTGGATGGATCGGGTCGCCAATGACTTGGAGCGGCTTGGGAGGACCATCG
ACGAAGATGCCGGGAATCTGGCGATAATGAACGGGCTTTCACCAGAGTAT
GACATTGAGAGGAGAATGATCGAGAGCAGCGATGACGCGCCAAATAGAGC
GCGCATCGAAACGATCATCGCGAACCAATATAACAGACTTCAGCAGCAGA
AAGTCGAGGCCGGGACGGAGGCACTGGCGGTCACGCTGAAAGGTACAGCG
GAAACGTGCCAGTTGTGCAACAAGCTTGGGCATGCAGCTCCTCAATGCAG
G
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig22673:1454..1954+

>mRNA_H-paniculata_contig22673.6034.1 ID=mRNA_H-paniculata_contig22673.6034.1|Name=mRNA_H-paniculata_contig22673.6034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig22673:1454..1954+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAGGCGTGGATCACACAAATCACCACCTGCAAAGGAATGGCATTGAC
GATCGTCCAGAGCACCGAGTCGTCGCGTGAGGCGTTCATGAAGCTCCAAA
AGCACTACCGCGCCAGCGGCCTTGAAGAGAAATCACTTCTGCTGCACGAA
TTGAAATCCCTAAGGATGGAGCCCGGGGAAGAACCCACAAATTTCCTTTT
GTGGATGGATCGGGTCGCCAATGACTTGGAGCGGCTTGGGAGGACCATCG
ACGAAGATGCCGGGAATCTGGCGATAATGAACGGGCTTTCACCAGAGTAT
GACATTGAGAGGAGAATGATCGAGAGCAGCGATGACGCGCCAAATAGAGC
GCGCATCGAAACGATCATCGCGAACCAATATAACAGACTTCAGCAGCAGA
AAGTCGAGGCCGGGACGGAGGCACTGGCGGTCACGCTGAAAGGTACAGCG
GAAACGTGCCAGTTGTGCAACAAGCTTGGGCATGCAGCTCCTCAATGCAG
GCAGAAGGCGTGGATCACACAAATCACCACCTGCAAAGGAATGGCATTGA
CGATCGTCCAGAGCACCGAGTCGTCGCGTGAGGCGTTCATGAAGCTCCAA
AAGCACTACCGCGCCAGCGGCCTTGAAGAGAAATCACTTCTGCTGCACGA
ATTGAAATCCCTAAGGATGGAGCCCGGGGAAGAACCCACAAATTTCCTTT
TGTGGATGGATCGGGTCGCCAATGACTTGGAGCGGCTTGGGAGGACCATC
GACGAAGATGCCGGGAATCTGGCGATAATGAACGGGCTTTCACCAGAGTA
TGACATTGAGAGGAGAATGATCGAGAGCAGCGATGACGCGCCAAATAGAG
CGCGCATCGAAACGATCATCGCGAACCAATATAACAGACTTCAGCAGCAG
AAAGTCGAGGCCGGGACGGAGGCACTGGCGGTCACGCTGAAAGGTACAGC
GGAAACGTGCCAGTTGTGCAACAAGCTTGGGCATGCAGCTCCTCAATGCA
GG
back to top