mRNA_H-paniculata_contig2267.6032.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2267.6032.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE) HSP 1 Score: 216 bits (549), Expect = 4.100e-65 Identity = 98/172 (56.98%), Postives = 121/172 (70.35%), Query Frame = 3
Query: 27 LGRGNCFYHVSQFSLMSESTAQVTFRKICEHFALELYHEHIFLPTRQALERVIHEYDRLGFTGVVGSTDVTHVKWDCCPCSFALTYMGKEGFATIAYQATVNHSGRALAVTKGFRGATNDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEDGVWMEHKGVYLLVDNGYHEVRT 542
LGRGNCF + Q SLMS+ A TF K C+HFA EL+ EHI+LPT + V+ YD+LG TG +GSTDVTH+ W CP + +Y GKEGF TIAYQ TV+H+GRA+A+T GF GATNDK+IIRYD V T+ D Y RT++L DG + E KG Y +VDNGYHEV +
Sbjct: 258 LGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLRRADGTFRERKGCYYIVDNGYHEVNS 429
BLAST of mRNA_H-paniculata_contig2267.6032.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 204 bits (519), Expect = 4.080e-61 Identity = 94/175 (53.71%), Postives = 122/175 (69.71%), Query Frame = 3
Query: 27 LGRGNCFYHVSQFSLMSESTAQVTFRKICEHFALELYHEHIFLPTRQALERVIHEYDRLGFTGVVGSTDVTHVKWDCCPCSFALTYMGKEGFATIAYQATVNHSGRALAVTKGFRGATNDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEDGVWMEHKGVYLLVDNGYHEVRTSRP 551
L RGN F + S +S T TF + C++FA ELY E+++LPT + L +V+ +YDR+GF G VGSTDVTH+ W CP + A Y GKEG T+A+Q TV+HSGR LAVT+GF GATNDK+IIRYD AV + DP Y ++ ++L+ +DG E KG YLLVDNGYH+ RT P
Sbjct: 91 LSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIP 265
BLAST of mRNA_H-paniculata_contig2267.6032.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 204 bits (519), Expect = 3.480e-60 Identity = 94/175 (53.71%), Postives = 122/175 (69.71%), Query Frame = 3
Query: 27 LGRGNCFYHVSQFSLMSESTAQVTFRKICEHFALELYHEHIFLPTRQALERVIHEYDRLGFTGVVGSTDVTHVKWDCCPCSFALTYMGKEGFATIAYQATVNHSGRALAVTKGFRGATNDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEDGVWMEHKGVYLLVDNGYHEVRTSRP 551
L RGN F + S +S T TF + C++FA ELY E+++LPT + L +V+ +YDR+GF G VGSTDVTH+ W CP + A Y GKEG T+A+Q TV+HSGR LAVT+GF GATNDK+IIRYD AV + DP Y ++ ++L+ +DG E KG YLLVDNGYH+ RT P
Sbjct: 182 LSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIP 356
BLAST of mRNA_H-paniculata_contig2267.6032.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI) HSP 1 Score: 201 bits (512), Expect = 4.550e-60 Identity = 93/171 (54.39%), Postives = 121/171 (70.76%), Query Frame = 3
Query: 27 LGRGNCFYHVSQFSLMSESTAQVTFRKICEHFALELYHEHIFLPTRQ--ALERVIHEYDRLGFTGVVGSTDVTHVKWDCCPCSFALTYMGKEGFATIAYQATVNHSGRALAVTKGFRGATNDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEDGVWMEHKGVYLLVDNGYHE 533
LGRGNCF + Q S MS +T Q F C+HFA E+Y EHI+LP+ Q L+ V+ +YDRLGF+G +GS DVTH+ W+ CP + +Y GKEG TI YQ TVNH+GRA AVT+GF G+TNDK+I+ +D AV+ + D Y ++TF ++NEDG KG YLLVDNGYH+
Sbjct: 133 LGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHK 303
BLAST of mRNA_H-paniculata_contig2267.6032.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 199 bits (506), Expect = 2.400e-59 Identity = 91/171 (53.22%), Postives = 119/171 (69.59%), Query Frame = 3
Query: 27 LGRGNCFYHVSQFSLMSESTAQVTFRKICEHFALELYHEHIFLPTRQ--ALERVIHEYDRLGFTGVVGSTDVTHVKWDCCPCSFALTYMGKEGFATIAYQATVNHSGRALAVTKGFRGATNDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEDGVWMEHKGVYLLVDNGYHE 533
LGRGNCF + Q S MS T Q F K C+HFA E+Y EHI+LP+ Q L+ V+ +YDRLGF+G +GS DVTH+ W CP + A +Y GKEG T+ YQ TVNH+GRA+AVT+GF +TNDK+ + +D V+ + D Y ++TF ++NEDG KG YLLVDNGYH+
Sbjct: 106 LGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHK 276
BLAST of mRNA_H-paniculata_contig2267.6032.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 201 bits (510), Expect = 5.410e-59 Identity = 94/175 (53.71%), Postives = 119/175 (68.00%), Query Frame = 3
Query: 27 LGRGNCFYHVSQFSLMSESTAQVTFRKICEHFALELYHEHIFLPTRQALERVIHEYDRLGFTGVVGSTDVTHVKWDCCPCSFALTYMGKEGFATIAYQATVNHSGRALAVTKGFRGATNDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEDGVWMEHKGVYLLVDNGYHEVRTSRP 551
L RGNCF + S +S TA TF + +FA E+Y EHIFLPT ++V+ +YDRLGF+G GSTDVTH+ W CP + A +Y GKEG+ T+AYQ TV+H+ R LAVT GF G+TNDKSIIRYD AV + EDP Y ++ F ++ DG + KG YLLVDNGYH+ T P
Sbjct: 166 LARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIP 340
BLAST of mRNA_H-paniculata_contig2267.6032.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE) HSP 1 Score: 192 bits (489), Expect = 3.890e-58 Identity = 88/158 (55.70%), Postives = 110/158 (69.62%), Query Frame = 3
Query: 27 LGRGNCFYHVSQFSLMSESTAQVTFRKICEHFALELYHEHIFLPTRQALERVIHEYDRLGFTGVVGSTDVTHVKWDCCPCSFALTYMGKEGFATIAYQATVNHSGRALAVTKGFRGATNDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEDGVWMEHKG 500
LGRGNCF + Q SLMS+ A TF K C+HFA EL+ EHI+LPT + V+ YD+LG TG +GSTDVTH+ W CP + +Y GKEGF TIAYQ TV+H+GRA+A+T GF GATNDK+I+RYD V T+ D Y RT++L DG + E KG
Sbjct: 11 LGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIMRYDAGVHTIKTDAQYTKRTYKLRRADGTYRERKG 168
BLAST of mRNA_H-paniculata_contig2267.6032.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE) HSP 1 Score: 191 bits (484), Expect = 2.690e-56 Identity = 90/172 (52.33%), Postives = 115/172 (66.86%), Query Frame = 3
Query: 27 LGRGNCFYHVSQFSLMSESTAQVTFRKICEHFALELYHEHIFLPTRQALERVIHEYDRLGFTGVVGSTDVTHVKWDCCPCSFALTYMGKEGFATIAYQATVNHSGRALAVTKGFRGATNDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEDGVWMEHKGVYLLVDNGYHEVRT 542
LG+GNCF V Q S MS+S AQ TF K C HFA E++ EHI+LPT L+ V+ + +LG+TG GSTDVTH+ W+ CP + ++ GKEGF TIAY TV+H GR LAVT GF GATNDK+IIRYD V + Y +R ++L +G +G +L+VDNGYHE T
Sbjct: 44 LGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVT 215
BLAST of mRNA_H-paniculata_contig2267.6032.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 190 bits (483), Expect = 2.070e-55 Identity = 97/199 (48.74%), Postives = 122/199 (61.31%), Query Frame = 3
Query: 27 LGRGNCFYHVSQFSLMSESTAQVTFRKICEHFALELYHEHIFLPTRQA--LERVIHEYDRLGFTGVVGSTDVTHVKWDCCPCSFALTYMGKEGFATIAYQATVNHSGRALAVTKGFRGATNDKSIIRYDVAVQTVGEDPTYC----------------------------DRTFRLFNEDGVWMEHKGVYLLVDNGYHE 533
LGRGNCF + Q S MS T Q F K C HFA E+Y E I LPT ++ L+ V+ +YDRLGFTG VGS DVTH+ W CP + A +Y GKEGF TIAYQ TV+H+GRA+AVT+GF G+TNDK+I+ +D AV+ + D Y ++TF ++NEDG KG YLLVDNGYH+
Sbjct: 93 LGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHK 291
BLAST of mRNA_H-paniculata_contig2267.6032.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE) HSP 1 Score: 182 bits (463), Expect = 2.220e-55 Identity = 87/172 (50.58%), Postives = 109/172 (63.37%), Query Frame = 3
Query: 27 LGRGNCFYHVSQFSLMSESTAQVTFRKICEHFALELYHEHIFLPTRQALERVIHEYDRLGFTGVVGSTDVTHVKWDCCPCSFALTYMGKEGFATIAYQATVNHSGRALAVTKGFRGATNDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEDGVWMEHKGVYLLVDNGYHEVRT 542
LGRGNCF + Q SLMS+ A TF K C+HFA EL+ EHI+LPT + V+ YD+LG TG +GSTDVTH+ W CP + +Y GKEGF TIAYQ TV+H+GRA+A+T G V T+ D Y RT++L DG + E KG YL+VDNGYHEV +
Sbjct: 11 LGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSG----------------VHTIKTDAQYTKRTYKLRGADGTFRERKGCYLIVDNGYHEVNS 166 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2267.6032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2267.6032.1 >prot_H-paniculata_contig2267.6032.1 ID=prot_H-paniculata_contig2267.6032.1|Name=mRNA_H-paniculata_contig2267.6032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp MSESTAQVTFRKICEHFALELYHEHIFLPTRQALERVIHEYDRLGFTGVVback to top mRNA from alignment at H-paniculata_contig2267:18733..19317+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2267.6032.1 ID=mRNA_H-paniculata_contig2267.6032.1|Name=mRNA_H-paniculata_contig2267.6032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=585bp|location=Sequence derived from alignment at H-paniculata_contig2267:18733..19317+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2267:18733..19317+ >mRNA_H-paniculata_contig2267.6032.1 ID=mRNA_H-paniculata_contig2267.6032.1|Name=mRNA_H-paniculata_contig2267.6032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig2267:18733..19317+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |