mRNA_H-paniculata_contig2266.6030.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2266.6030.1
Unique NamemRNA_H-paniculata_contig2266.6030.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2266.6030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2266contigH-paniculata_contig2266:19978..20438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size461
Cds size348
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929629.39792-UTR-H-paniculata_contig2266:19977..200901622929629.39792-UTR-H-paniculata_contig2266:19977..20090Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2266 19978..20090 +
1691480942.6588995-UTR-H-paniculata_contig2266:19977..200901691480942.6588995-UTR-H-paniculata_contig2266:19977..20090Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2266 19978..20090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929629.4186144-CDS-H-paniculata_contig2266:20090..204381622929629.4186144-CDS-H-paniculata_contig2266:20090..20438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2266 20091..20438 +
1691480942.6754572-CDS-H-paniculata_contig2266:20090..204381691480942.6754572-CDS-H-paniculata_contig2266:20090..20438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2266 20091..20438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2266.6030.1prot_H-paniculata_contig2266.6030.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2266 20091..20438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2266.6030.1

>prot_H-paniculata_contig2266.6030.1 ID=prot_H-paniculata_contig2266.6030.1|Name=mRNA_H-paniculata_contig2266.6030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MVAEFSAARIVPAYVLVRRYDFSSQFRYSIFTVDFFSISGQAHGLFTLLL
SPGVFRNLFLVFFAVVNAREERGGTHSQPASAVAVSSKNRAPTSLCRTSS
QDLHDHLRHLHSRYV*
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mRNA from alignment at H-paniculata_contig2266:19978..20438+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2266.6030.1 ID=mRNA_H-paniculata_contig2266.6030.1|Name=mRNA_H-paniculata_contig2266.6030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=461bp|location=Sequence derived from alignment at H-paniculata_contig2266:19978..20438+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAATATGACGATGAGAGAACTTGTTTCATGTGTCTATTTGCTTGAAAAT
CATGTTGAACTTGACTTGCCATCGCGATAAACAGACTAAAATGGAGGTGT
TCATATCGGCCCTATGGTAGCCGAGTTTTCAGCTGCTCGGATTGTTCCGG
CGTATGTCCTCGTTCGGAGGTACGACTTTTCTTCACAGTTTAGGTATTCA
ATTTTCACTGTTGACTTTTTTTCAATTTCCGGACAAGCACATGGACTATT
TACTCTTCTTTTATCACCAGGTGTGTTTCGCAATCTCTTTTTAGTATTTT
TTGCAGTTGTAAATGCAAGAGAGGAGAGAGGAGGAACCCACAGCCAACCT
GCCAGCGCAGTGGCTGTTTCTTCTAAAAATCGTGCTCCAACGAGCCTTTG
TCGCACGAGCAGTCAAGACCTGCACGATCACCTGAGACATTTACATAGTA
GGTATGTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2266:19978..20438+

>mRNA_H-paniculata_contig2266.6030.1 ID=mRNA_H-paniculata_contig2266.6030.1|Name=mRNA_H-paniculata_contig2266.6030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig2266:19978..20438+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGCCGAGTTTTCAGCTGCTCGGATTGTTCCGGCGTATGTCCTCGT
TCGGAGGTACGACTTTTCTTCACAGTTTAGGTATTCAATTTTCACTGTTG
ACTTTTTTTCAATTTCCGGACAAGCACATGGACTATTTACTCTTCTTTTA
TCACCAGGTGTGTTTCGCAATCTCTTTTTAGTATTTTTTGCAGTTGTAAA
TGCAAGAGAGGAGAGAGGAGGAACCCACAGCCAACCTGCCAGCGCAGTGG
CTGTTTCTTCTAAAAATCGTGCTCCAACGAGCCTTTGTCGCACGAGCAGT
CAAGACCTGCACGATCACCTGAGACATTTACATAGTAGGTATGTGTGAAT
GGTAGCCGAGTTTTCAGCTGCTCGGATTGTTCCGGCGTATGTCCTCGTTC
GGAGGTACGACTTTTCTTCACAGTTTAGGTATTCAATTTTCACTGTTGAC
TTTTTTTCAATTTCCGGACAAGCACATGGACTATTTACTCTTCTTTTATC
ACCAGGTGTGTTTCGCAATCTCTTTTTAGTATTTTTTGCAGTTGTAAATG
CAAGAGAGGAGAGAGGAGGAACCCACAGCCAACCTGCCAGCGCAGTGGCT
GTTTCTTCTAAAAATCGTGCTCCAACGAGCCTTTGTCGCACGAGCAGTCA
AGACCTGCACGATCACCTGAGACATTTACATAGTAGGTATGTGTGA
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