mRNA_H-paniculata_contig22658.6029.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22658.6029.1
Unique NamemRNA_H-paniculata_contig22658.6029.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22658.6029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22658contigH-paniculata_contig22658:940..2780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929629.3311696-CDS-H-paniculata_contig22658:939..9881622929629.3311696-CDS-H-paniculata_contig22658:939..988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22658 940..988 -
1691480942.6345367-CDS-H-paniculata_contig22658:939..9881691480942.6345367-CDS-H-paniculata_contig22658:939..988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22658 940..988 -
1622929629.3496232-CDS-H-paniculata_contig22658:2601..27801622929629.3496232-CDS-H-paniculata_contig22658:2601..2780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22658 2602..2780 -
1691480942.6451316-CDS-H-paniculata_contig22658:2601..27801691480942.6451316-CDS-H-paniculata_contig22658:2601..2780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22658 2602..2780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22658.6029.1prot_H-paniculata_contig22658.6029.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22658 940..2780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22658.6029.1

>prot_H-paniculata_contig22658.6029.1 ID=prot_H-paniculata_contig22658.6029.1|Name=mRNA_H-paniculata_contig22658.6029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MPSHTFVILQPLGSSGRRGSSSLHGWAADRPSPRLSPHGTVTPRTAVRNA
WGGSPGGSMRSGPQTPGCAHSHSGKF
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mRNA from alignment at H-paniculata_contig22658:940..2780-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22658.6029.1 ID=mRNA_H-paniculata_contig22658.6029.1|Name=mRNA_H-paniculata_contig22658.6029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1841bp|location=Sequence derived from alignment at H-paniculata_contig22658:940..2780- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTTCGCACACTTTTGTTATTTTGCAGCCGCTCGGCAGCAGCGGGCG
AAGGGGCTCCTCTTCCCTGCATGGTTGGGCAGCTGATCGGCCAAGTCCAA
GGCTTAGCCCCCATGGAACTGTTACACCTAGAACCGCCGTCAGAAATGCG
TGGGGAGGATCTCCGGGGGGAAGTATGAGGTGGGTTTCTTGTCTGTTTTG
CTGTGCTGTCCTGTGGGTGTGGGTATTAAGTTACAAGGTTGGATTTTTTT
ATTTTTTTTTTCAAAAACGAAATAAGCCAATTTTTTCAAAAATAAAATTG
TCTAGGTTTTAGCTTGGTTTTTATTTTGTTATTAGGATTTTAGGTGGTAC
CCACAATAGTGTGTTTCAGTTAGCGCCCTTGATCACTGATAGCTGGAGCG
ATACGGGGTGGTCGATGGCGCGAAATCGGTCCCAACGGATCAAAATGAAA
AATCGCTTTGTTTTTACGTGATAGCCCAAAAATGATGAATTACTTGATTC
ACGTACTAAACCTTATATCGAGAAAATCTCATCTCTGAGATCGAACTGGC
TTATGCCAATGCACTAAGTACATGTCGACAGCTGTGCTTTAGCGCATGTG
CAGTGGCGATTTTGAATCTTATTTCATAATGGTGACACACGTCACGAAAA
TAGTGTATTTTGAATATATTTATGTCCGTAGCTCGCTCATTTTTTTGTTG
AGCCAAAATCGCCTCCGCACATGCATCAGTACTTGCCACAGCGAACATAG
CATAACAAACCGCGCACAATTCCTGGTAGTTGGGGACGAGACATGTCTCA
TCAAAGATCGGATGGCTTTACATGCGGCTAATTTTTTCGGTACCAATATA
TCAAGTATAAAAACATCTGGAATATACCGCCATGACTTCGCGGCTACGCG
TTTCGGTAACAGTTTCAAGTACAAAACCGAATATCTAAATTGAGCAGCGT
CTCAGCAAGATTAAAAAGAAGTGAGTGACATTGCACATTTTGTTTTCAGG
CGAGTATAATCGCTGGCGGGCAGGAATATTCATGTTGATTTTTTGTTGGA
ATTAAGAAGGCTGAGGGCATGTACGATATATGTTACTTTCAATTAAACAT
TTTTGCCAGGGGTTGGGATTGTCACGTACGTACCTGCTTGTACCATGTTG
ACTCATGTCTGTCCTGTCTGCCACCCACGCATCTCTTATTGATAACGCAT
GCCCCCCCCCTAATTGATCTAATTTTGCTGATGAGAGTGCGCGACCTAAG
ACTTCGAATCAGCTGTATGACCTAAAGATGGATGTGTTACATTGACTGCG
GCAAGTGAGTTGACTTGTGAACAGGCTTTCGCTGTGGGTGAATGGCTTTG
TTTTAATTATGTCATGGGTTCACTTAAAAGCCGTTTACCGTCAAAGCCTT
GGACTACGCAACCCGCTCGAAGTGTGTGTTCAAGTTCGATTTTTTCGAGC
AGAACGAGTCTGCTGTTGTCGAAAAGCATGTCTGTTGACAGATCTCGACG
AGATCTGTACAAAGGCACAAGTTCCGGTGTCAGAAGTACAGTTGTGCAAT
TTTCGATAAAACCTGTTCCGAAAGACGCTTCGAGCGGGGTGTGTAATGGA
AGGGTTTTGTAATTCATCTTCACGTACAGTACAGTACAGTACAGTACACA
CGCAAGTGATGTAGCGATTGGTGATCGTAAATCGCTGGGATAGAAACGCA
AAGCTTCGTCCTCCCGAGGACTTGGGGTCAATGGTCTAAACGTGAGTACT
TCCTCCGCCACGGCCATATCCTATCCTGAACGACGTTGGCAGAAGTGGGC
CACAGACACCGGGCTGTGCTCACAGTCACAGCGGGAAATTT
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Coding sequence (CDS) from alignment at H-paniculata_contig22658:940..2780-

>mRNA_H-paniculata_contig22658.6029.1 ID=mRNA_H-paniculata_contig22658.6029.1|Name=mRNA_H-paniculata_contig22658.6029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig22658:940..2780- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTTCGCACACTTTTGTTATTTTGCAGCCGCTCGGCAGCAGCGGGCG
AAGGGGCTCCTCTTCCCTGCATGGTTGGGCAGCTGATCGGCCAAGTCCAA
GGCTTAGCCCCCATGGAACTGTTACACCTAGAACCGCCGTCAGAAATGCG
TGGGGAGGATCTCCGGGGGGAAGTATGAGATGCCTTCGCACACTTTTGTT
ATTTTGCAGCCGCTCGGCAGCAGCGGGCGAAGGGGCTCCTCTTCCCTGCA
TGGTTGGGCAGCTGATCGGCCAAGTCCAAGGCTTAGCCCCCATGGAACTG
TTACACCTAGAACCGCCGTCAGAAATGCGTGGGGAGGATCTCCGGGGGGA
AGTATGAGAAGTGGGCCACAGACACCGGGCTGTGCTCACAGTCACAGCGG
GAAATTTAAGTGGGCCACAGACACCGGGCTGTGCTCACAGTCACAGCGGG
AAATTT
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