prot_H-paniculata_contig2264.6026.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2264.6026.1
Unique Nameprot_H-paniculata_contig2264.6026.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length197
Homology
BLAST of mRNA_H-paniculata_contig2264.6026.1 vs. uniprot
Match: D8LSK7_ECTSI (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK7_ECTSI)

HSP 1 Score: 231 bits (590), Expect = 1.430e-74
Identity = 114/196 (58.16%), Postives = 152/196 (77.55%), Query Frame = 0
Query:    5 SLSKPLQAFVQILMSRKVMSEEEAKVALQKSYEQFGDIGLSLNEAISSVDKMLDCIEMGVRSMKANGRDGAIYHCMVNKSTDEIAKVHGSKLVDWQVELFKGIVALFAKKEEEELALLEIRELKISAKGITHGVRYTEWNTD----IRAFAEQLVADFWLARPGNRAAYKLGVRTYVELPELLKSYDLAIPQVIHH 196
            SL +PLQAF QILM+RKVMS++EA+ AL  SY++FG++  +L+EAIS VDKML  ++MGVRSMKA+G +G IYHC +NK+ DEIAK+HGSKL DWQV+ F+G++  FAK EE++L LL+++       G+T  ++  E  +     I++FA+QLV DFWL RPGN   Y+LGVRTYVELPELLK++DL +PQVIHH
Sbjct:    3 SLREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAKSEEQQLELLDLQ-------GLTEHIKTKEAESTKREMIKSFADQLVDDFWLTRPGNDVFYRLGVRTYVELPELLKTFDLEVPQVIHH 191          
BLAST of mRNA_H-paniculata_contig2264.6026.1 vs. uniprot
Match: W7TNJ7_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNJ7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.140e-17
Identity = 52/187 (27.81%), Postives = 99/187 (52.94%), Query Frame = 0
Query:   11 QAFVQILMSRKVMSEEEAKVALQKSYEQFG-DIGLSLNEAISSVDKMLDCIEMGVRSMKANGRDGAIYHCMVNKSTDEIAKVHGSKLVDWQVELFKGIVALFAKKEEEELALLEIRELKISAKGITHGVRYTEWNTDIRAFAEQLVADFWLARPGNRAAYKLGVRTYVELPELLKSYDLAIPQVIHH 196
            QAF+Q+LMSRKVM+  +A  AL    E+      L +   +++++K L    + +R M     +    + +VN  +D+++K+H SK+ DW+   FK ++     +    +   E+  L++   G    VR      + R+    L A+FWL R      + LG RT++EL + ++++++ +PQV+++
Sbjct:   17 QAFLQLLMSRKVMTHSQAANALAMISEELNVQDQLDVKSCLANLNKELQNCNLQIRGMVHQDSEA---YAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPIGGTAASVR------EKRSVLSLLSAEFWLQRD-KHGRFALGPRTFLELDDFVRAHEMEMPQVLYY 193          
BLAST of mRNA_H-paniculata_contig2264.6026.1 vs. uniprot
Match: A0A7S2VZL5_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2VZL5_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.970e-13
Identity = 50/188 (26.60%), Postives = 100/188 (53.19%), Query Frame = 0
Query:   11 QAFVQILMSRKVMSEEEAKVALQKSYEQF--GDIGLSLNEAISSVDKMLDCIEMGVRSMKANGRDGAIYHCMVNKSTDEIAKVHGSKLVDWQVELFKGIVALFAKKEEEELALLEIRELKISAKGITHGVRYTEWNTDIRAFAEQLVADFWLARPGNRAAYKLGVRTYVELPELLKSYDLAIPQVIHH 196
            QAF+Q+L++ +V+SE +A+  L+   ++   G +   L   +  V++ L  +++ VR+M    ++    H +VN + D+IA+ HGSK+   ++  F+  +++  + + E+         K +A G        + N   +A  E +V   WLA    R   ++  R+++E+P+LL+S+ +  PQ I+H
Sbjct:   24 QAFLQMLLAARVVSENKAQSMLEAVRDRMEAGSLPGDLETTLKRVNRALKLMDLEVRTMALPQQERV--HAVVNLAADDIAEKHGSKMQHNEIRAFRNAISIIGECDGED---------KWAALG--------DLNKADQAVVEDMVQRGWLAVDSQRRG-RIAARSFLEIPDLLESHGIERPQFIYH 191          
BLAST of mRNA_H-paniculata_contig2264.6026.1 vs. uniprot
Match: A0A7S2GXD3_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GXD3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 9.840e-13
Identity = 54/201 (26.87%), Postives = 101/201 (50.25%), Query Frame = 0
Query:    5 SLSKPLQAFVQILMSRKVMSEEEAKVALQKSYEQFGDIGLSLNEAISSVDKMLDCIEMGVRSM---KANGRDGAIYHCMVNKSTDEIAKVHGSKLVDWQVELFKGIVALFAK----KEEEELALLEIRELKISAKGITHGVRYTEWNTDIRAFAEQLVADFWLARPG-NRAAYKLGVRTYVELPELLKSYDL-AIPQVIHH 196
            +LS   +AF+QILM+R+ M+++EA+++     ++ G +G     +   +++ L    + VRSM    +  + G + H +VN + D+I+   G+K    ++E FK  V    +    +++  +   ++R+ K+  +             + RA  + LV   WL     N     +G RTY+EL E L+S D+   PQ+I+H
Sbjct:   14 TLSDGEKAFLQILMARRCMTDDEARLS-HADCQRIGPVGDDPQHSFKKINRALKMTGLEVRSMVFTPSESQPGTLVHSIVNVTNDDISMKFGTKKSPAELEYFKKAVEAIGESIEAQQQNTVPFSDVRDHKLPPR-------------EARAVRDHLVEQHWLKLDHENEDMIGIGPRTYLELAEFLESLDVFPRPQIIYH 200          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2264.6026.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSK7_ECTSI1.430e-7458.16Non-structural maintenance of chromosomes element ... [more]
W7TNJ7_9STRA5.140e-1727.81Non-structural maintenance of chromosomes element ... [more]
A0A7S2VZL5_9STRA5.970e-1326.60Non-structural maintenance of chromosomes element ... [more]
A0A7S2GXD3_9STRA9.840e-1326.87Non-structural maintenance of chromosomes element ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011513Non-structural maintenance of chromosomes element 1PFAMPF07574SMC_Nse1coord: 11..179
e-value: 2.8E-10
score: 40.4
IPR011513Non-structural maintenance of chromosomes element 1PANTHERPTHR20973NON-SMC ELEMENT 1-RELATEDcoord: 6..191
NoneNo IPR availableGENE3D1.10.10.2370coord: 6..84
e-value: 6.1E-7
score: 31.4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..196
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2264contigH-paniculata_contig2264:1261..13885 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2264.6026.1mRNA_H-paniculata_contig2264.6026.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2264 628..13960 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2264.6026.1 ID=prot_H-paniculata_contig2264.6026.1|Name=mRNA_H-paniculata_contig2264.6026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
MKIPSLSKPLQAFVQILMSRKVMSEEEAKVALQKSYEQFGDIGLSLNEAI
SSVDKMLDCIEMGVRSMKANGRDGAIYHCMVNKSTDEIAKVHGSKLVDWQ
VELFKGIVALFAKKEEEELALLEIRELKISAKGITHGVRYTEWNTDIRAF
AEQLVADFWLARPGNRAAYKLGVRTYVELPELLKSYDLAIPQVIHH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011513Nse1