mRNA_H-paniculata_contig2264.6026.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2264.6026.1 vs. uniprot
Match: D8LSK7_ECTSI (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK7_ECTSI) HSP 1 Score: 230 bits (587), Expect = 1.070e-70 Identity = 114/196 (58.16%), Postives = 152/196 (77.55%), Query Frame = 1
Query: 88 SLSKPLQAFVQILMSRKVMSEEEAKVALQKSYEQFGDIGLSLNEAISSVDKMLDCIEMGVRSMKANGRDGAIYHCMVNKSTDEIAKVHGSKLVDWQVELFKGIVALFAKKEEEELALLEIRELKISAKGITHGVRYTEWNTD----IRAFAEQLVADFWLARPGNRAAYKLGVRTYVELPELLKSYDLAIPQVIHH 663
SL +PLQAF QILM+RKVMS++EA+ AL SY++FG++ +L+EAIS VDKML ++MGVRSMKA+G +G IYHC +NK+ DEIAK+HGSKL DWQV+ F+G++ FAK EE++L LL+++ G+T ++ E + I++FA+QLV DFWL RPGN Y+LGVRTYVELPELLK++DL +PQVIHH
Sbjct: 3 SLREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAKSEEQQLELLDLQ-------GLTEHIKTKEAESTKREMIKSFADQLVDDFWLTRPGNDVFYRLGVRTYVELPELLKTFDLEVPQVIHH 191
BLAST of mRNA_H-paniculata_contig2264.6026.1 vs. uniprot
Match: W7TNJ7_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNJ7_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 3.350e-15 Identity = 52/187 (27.81%), Postives = 99/187 (52.94%), Query Frame = 1
Query: 106 QAFVQILMSRKVMSEEEAKVALQKSYEQFG-DIGLSLNEAISSVDKMLDCIEMGVRSMKANGRDGAIYHCMVNKSTDEIAKVHGSKLVDWQVELFKGIVALFAKKEEEELALLEIRELKISAKGITHGVRYTEWNTDIRAFAEQLVADFWLARPGNRAAYKLGVRTYVELPELLKSYDLAIPQVIHH 663
QAF+Q+LMSRKVM+ +A AL E+ L + +++++K L + +R M + + +VN +D+++K+H SK+ DW+ FK ++ + + E+ L++ G VR + R+ L A+FWL R + LG RT++EL + ++++++ +PQV+++
Sbjct: 17 QAFLQLLMSRKVMTHSQAANALAMISEELNVQDQLDVKSCLANLNKELQNCNLQIRGMVHQDSEA---YAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPIGGTAASVR------EKRSVLSLLSAEFWLQRD-KHGRFALGPRTFLELDDFVRAHEMEMPQVLYY 193
BLAST of mRNA_H-paniculata_contig2264.6026.1 vs. uniprot
Match: A0A7S2VZL5_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2VZL5_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.920e-11 Identity = 50/188 (26.60%), Postives = 100/188 (53.19%), Query Frame = 1
Query: 106 QAFVQILMSRKVMSEEEAKVALQKSYEQF--GDIGLSLNEAISSVDKMLDCIEMGVRSMKANGRDGAIYHCMVNKSTDEIAKVHGSKLVDWQVELFKGIVALFAKKEEEELALLEIRELKISAKGITHGVRYTEWNTDIRAFAEQLVADFWLARPGNRAAYKLGVRTYVELPELLKSYDLAIPQVIHH 663
QAF+Q+L++ +V+SE +A+ L+ ++ G + L + V++ L +++ VR+M ++ H +VN + D+IA+ HGSK+ ++ F+ +++ + + E+ K +A G + N +A E +V WLA R ++ R+++E+P+LL+S+ + PQ I+H
Sbjct: 24 QAFLQMLLAARVVSENKAQSMLEAVRDRMEAGSLPGDLETTLKRVNRALKLMDLEVRTMALPQQERV--HAVVNLAADDIAEKHGSKMQHNEIRAFRNAISIIGECDGED---------KWAALG--------DLNKADQAVVEDMVQRGWLAVDSQRRG-RIAARSFLEIPDLLESHGIERPQFIYH 191
BLAST of mRNA_H-paniculata_contig2264.6026.1 vs. uniprot
Match: A0A7S2GXD3_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GXD3_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 4.220e-11 Identity = 54/201 (26.87%), Postives = 101/201 (50.25%), Query Frame = 1
Query: 88 SLSKPLQAFVQILMSRKVMSEEEAKVALQKSYEQFGDIGLSLNEAISSVDKMLDCIEMGVRSM---KANGRDGAIYHCMVNKSTDEIAKVHGSKLVDWQVELFKGIVALFAK----KEEEELALLEIRELKISAKGITHGVRYTEWNTDIRAFAEQLVADFWLARPG-NRAAYKLGVRTYVELPELLKSYDL-AIPQVIHH 663
+LS +AF+QILM+R+ M+++EA+++ ++ G +G + +++ L + VRSM + + G + H +VN + D+I+ G+K ++E FK V + +++ + ++R+ K+ + + RA + LV WL N +G RTY+EL E L+S D+ PQ+I+H
Sbjct: 14 TLSDGEKAFLQILMARRCMTDDEARLS-HADCQRIGPVGDDPQHSFKKINRALKMTGLEVRSMVFTPSESQPGTLVHSIVNVTNDDISMKFGTKKSPAELEYFKKAVEAIGESIEAQQQNTVPFSDVRDHKLPPR-------------EARAVRDHLVEQHWLKLDHENEDMIGIGPRTYLELAEFLESLDVFPRPQIIYH 200 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2264.6026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2264.6026.1 >prot_H-paniculata_contig2264.6026.1 ID=prot_H-paniculata_contig2264.6026.1|Name=mRNA_H-paniculata_contig2264.6026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp MKIPSLSKPLQAFVQILMSRKVMSEEEAKVALQKSYEQFGDIGLSLNEAIback to top mRNA from alignment at H-paniculata_contig2264:628..13960- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2264.6026.1 ID=mRNA_H-paniculata_contig2264.6026.1|Name=mRNA_H-paniculata_contig2264.6026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13333bp|location=Sequence derived from alignment at H-paniculata_contig2264:628..13960- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2264:628..13960- >mRNA_H-paniculata_contig2264.6026.1 ID=mRNA_H-paniculata_contig2264.6026.1|Name=mRNA_H-paniculata_contig2264.6026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig2264:628..13960- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |