mRNA_H-paniculata_contig2262.6023.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2262.6023.1
Unique NamemRNA_H-paniculata_contig2262.6023.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2262.6023.1 vs. uniprot
Match: A0A6H5JIC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC8_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.490e-24
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 QVLAASVAAGVSSTFAATIGGVLFSIEITTLYYDMGNYFKAFVAAISGTVAVSLVRTLAE 180
            QVLAASVA G+SSTFAATIGGVLFSIEITTLYYD+GNYFKAFVAAISGTVAVS+VR LAE
Sbjct:  750 QVLAASVAVGLSSTFAATIGGVLFSIEITTLYYDVGNYFKAFVAAISGTVAVSVVRHLAE 809
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BLAST of mRNA_H-paniculata_contig2262.6023.1 vs. uniprot
Match: D7FQ35_ECTSI (Chloride channel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ35_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 6.360e-24
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 QVLAASVAAGVSSTFAATIGGVLFSIEITTLYYDMGNYFKAFVAAISGTVAVSLVRTLAE 180
            QVLAASVA G+SSTFAATIGGVLFSIEITTLYYD+GNYFKAFVAAISGTVAVS+VR LA+
Sbjct:  745 QVLAASVAVGLSSTFAATIGGVLFSIEITTLYYDVGNYFKAFVAAISGTVAVSVVRHLAD 804
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BLAST of mRNA_H-paniculata_contig2262.6023.1 vs. uniprot
Match: A0A2P4XD43_9STRA (Chloride channel protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XD43_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.780e-12
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 QVLAASVAAGVSSTFAATIGGVLFSIEITTLYYDMGNYFKAFVAAISGTVAVSLVRTLAE 180
            Q+LAA+ A GVSS F++ IGGVLFS+E+T+ YY M NY KAF++A+SG V + L   LA+
Sbjct:  278 QLLAAACAVGVSSVFSSPIGGVLFSMEVTSTYYLMSNYIKAFISAVSGAVMLRLTLVLAK 337
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BLAST of mRNA_H-paniculata_contig2262.6023.1 vs. uniprot
Match: A0A225WHR5_9STRA (Chloride channel protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WHR5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.790e-12
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 QVLAASVAAGVSSTFAATIGGVLFSIEITTLYYDMGNYFKAFVAAISGTVAVSLVRTLAE 180
            Q+LAA+ A GVSS F++ IGGVLFS+E+T+ YY M NY KAF++A+SG V + L   LA+
Sbjct:  264 QMLAAACAVGVSSLFSSPIGGVLFSMEVTSTYYLMSNYIKAFISAVSGAVMLRLTLVLAK 323
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BLAST of mRNA_H-paniculata_contig2262.6023.1 vs. uniprot
Match: A0A5D6YQ65_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YQ65_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.800e-12
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 QVLAASVAAGVSSTFAATIGGVLFSIEITTLYYDMGNYFKAFVAAISGTVAVSLVRTLAEGS 186
            Q+LAA+ A GVSSTF+A IGGVLFS+E+T  YY M NY KAF+++++G + + L   LA  +
Sbjct:  341 QLLAAACAVGVSSTFSAPIGGVLFSMEVTATYYLMSNYMKAFISSVAGALMLQLTLALASNT 402
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BLAST of mRNA_H-paniculata_contig2262.6023.1 vs. uniprot
Match: A0A484E3H0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3H0_BRELC)

HSP 1 Score: 68.6 bits (166), Expect = 5.180e-12
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 QVLAASVAAGVSSTFAATIGGVLFSIEITTLYYDMGNYFKAFVAAISGTVAVSLVRTLAE 180
            Q+LAA+ A GVSS F++ IGGVLFS+E+T+ YY M NY KAF++A+SG V + L   LA 
Sbjct:  262 QLLAAACAVGVSSLFSSPIGGVLFSMEVTSTYYLMSNYIKAFISAVSGAVMLRLTLVLAN 321
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BLAST of mRNA_H-paniculata_contig2262.6023.1 vs. uniprot
Match: A0A0N7L7S9_PLAHL (Chloride channel protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L7S9_PLAHL)

HSP 1 Score: 68.6 bits (166), Expect = 5.190e-12
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 QVLAASVAAGVSSTFAATIGGVLFSIEITTLYYDMGNYFKAFVAAISGTVAVSLVRTLAE 180
            Q+LAA+ A GVSS F++ IGGVLFS+E+T+ YY M NY KAF++A+SG V + L   LA 
Sbjct:  252 QLLAAACAVGVSSLFSSPIGGVLFSMEVTSTYYLMSNYIKAFISAVSGAVMLRLTLVLAN 311
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BLAST of mRNA_H-paniculata_contig2262.6023.1 vs. uniprot
Match: A0A2D4BJM6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJM6_PYTIN)

HSP 1 Score: 68.2 bits (165), Expect = 7.080e-12
Identity = 32/62 (51.61%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 QVLAASVAAGVSSTFAATIGGVLFSIEITTLYYDMGNYFKAFVAAISGTVAVSLVRTLAEGS 186
            Q+LAA+ A GV+STF++ IGGVLFS+E+T+ YY + NY KAF++++SG V + +  +LA+ S
Sbjct:  259 QLLAAACAVGVASTFSSPIGGVLFSMEVTSTYYLISNYMKAFISSVSGAVMLQVSLSLAQSS 320
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BLAST of mRNA_H-paniculata_contig2262.6023.1 vs. uniprot
Match: H3H2K8_PHYRM (Chloride channel protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H2K8_PHYRM)

HSP 1 Score: 68.2 bits (165), Expect = 7.090e-12
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 QVLAASVAAGVSSTFAATIGGVLFSIEITTLYYDMGNYFKAFVAAISGTVAVSLVRTLAE 180
            Q+LAA+ A GVSS F++ IGGVLFS+E+T+ YY M NY KAF++A+SG + + L   LA+
Sbjct:  274 QLLAAACAVGVSSLFSSPIGGVLFSMEVTSTYYLMSNYIKAFISAVSGALMLRLTLVLAQ 333
[Close]
BLAST of mRNA_H-paniculata_contig2262.6023.1 vs. uniprot
Match: A0A8K1C3H4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3H4_PYTOL)

HSP 1 Score: 68.2 bits (165), Expect = 7.090e-12
Identity = 31/62 (50.00%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 QVLAASVAAGVSSTFAATIGGVLFSIEITTLYYDMGNYFKAFVAAISGTVAVSLVRTLAEGS 186
            Q+LAA+ A GV+STF++ IGGVLFS+E+T+ YY + NY KAF++++SG++ + +   LA+ S
Sbjct:  307 QLLAAACAVGVASTFSSPIGGVLFSMEVTSTYYLISNYMKAFISSVSGSLMLQITLALADSS 368
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2262.6023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIC8_9PHAE2.490e-2491.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ35_ECTSI6.360e-2490.00Chloride channel protein n=1 Tax=Ectocarpus silicu... [more]
A0A2P4XD43_9STRA2.780e-1256.67Chloride channel protein n=1 Tax=Phytophthora palm... [more]
A0A225WHR5_9STRA3.790e-1256.67Chloride channel protein n=1 Tax=Phytophthora mega... [more]
A0A5D6YQ65_9STRA3.800e-1253.23Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A484E3H0_BRELC5.180e-1256.67Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A0N7L7S9_PLAHL5.190e-1256.67Chloride channel protein n=1 Tax=Plasmopara halste... [more]
A0A2D4BJM6_PYTIN7.080e-1251.61Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
H3H2K8_PHYRM7.090e-1255.00Chloride channel protein n=1 Tax=Phytophthora ramo... [more]
A0A8K1C3H4_PYTOL7.090e-1250.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2262contigH-paniculata_contig2262:21450..21635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue4.9e-19
Seed eggNOG ortholog2880.D7FQ35
KEGG koko:K05011
KEGG TC2.A.49.2.12,2.A.49.2.13,2.A.49.2.6,2.A.49.2.7
KEGG Pathwayko04978,map04978
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.voltage-gated chloride channel activity
EggNOG OGsCOG0038@1,KOG0476@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.5545623-CDS-H-paniculata_contig2262:21449..216351622929628.5545623-CDS-H-paniculata_contig2262:21449..21635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2262 21450..21635 +
1691480942.2635753-CDS-H-paniculata_contig2262:21449..216351691480942.2635753-CDS-H-paniculata_contig2262:21449..21635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2262 21450..21635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2262.6023.1prot_H-paniculata_contig2262.6023.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2262 21450..21635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2262.6023.1

>prot_H-paniculata_contig2262.6023.1 ID=prot_H-paniculata_contig2262.6023.1|Name=mRNA_H-paniculata_contig2262.6023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
QVLAASVAAGVSSTFAATIGGVLFSIEITTLYYDMGNYFKAFVAAISGTV
AVSLVRTLAEGS
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mRNA from alignment at H-paniculata_contig2262:21450..21635+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2262.6023.1 ID=mRNA_H-paniculata_contig2262.6023.1|Name=mRNA_H-paniculata_contig2262.6023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig2262:21450..21635+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGCTGGCGGCTTCCGTGGCGGCCGGCGTTTCGTCAACCTTCGCGGC
CACGATTGGCGGCGTCTTGTTCTCCATCGAGATCACCACTCTCTACTACG
ACATGGGCAACTACTTCAAGGCCTTTGTCGCCGCCATATCGGGGACGGTG
GCCGTCAGCCTTGTCCGCACGCTTGCTGAAGGCTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2262:21450..21635+

>mRNA_H-paniculata_contig2262.6023.1 ID=mRNA_H-paniculata_contig2262.6023.1|Name=mRNA_H-paniculata_contig2262.6023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig2262:21450..21635+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGCTGGCGGCTTCCGTGGCGGCCGGCGTTTCGTCAACCTTCGCGGC
CACGATTGGCGGCGTCTTGTTCTCCATCGAGATCACCACTCTCTACTACG
ACATGGGCAACTACTTCAAGGCCTTTGTCGCCGCCATATCGGGGACGGTG
GCCGTCAGCCTTGTCCGCACGCTTGCTGAAGGCTCGCAGGTGCTGGCGGC
TTCCGTGGCGGCCGGCGTTTCGTCAACCTTCGCGGCCACGATTGGCGGCG
TCTTGTTCTCCATCGAGATCACCACTCTCTACTACGACATGGGCAACTAC
TTCAAGGCCTTTGTCGCCGCCATATCGGGGACGGTGGCCGTCAGCCTTGT
CCGCACGCTTGCTGAAGGCTCG
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