prot_H-paniculata_contig2262.6022.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig2262.6022.1
Unique Name	prot_H-paniculata_contig2262.6022.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	442

Homology

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BLAST of mRNA_H-paniculata_contig2262.6022.1 vs. uniprot
Match: A0A6H5JIC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC8_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 6.090e-57
Identity = 128/230 (55.65%), Postives = 162/230 (70.43%), Query Frame = 0

Query:  226 SETAKTVSQTGTPXXXXXXXTSSRSVAPLTYVARRPSRAG---SMSSSYLDS----GEVDPQG------RQPSARIRNEAKHVSEQKRGVTTSYKSEEQSKQAHKISFFLVVLGVLTGVGSHGIDIGIVILGDVGNWVVTKGGEASGENPMIRFFLYWMYVFTLTAVAALMTSFFAPGVMGSGIPAMKYMMDTDDLAKKLRSFSLTALFVKASGLLLVGGGGLNVGREGP 442
            SET KT+S++GTP        +SR   P +    R SR G   S++SSY++S       D +G      ++PSAR++NEAKH S+QKRGVTTSYKSEE  KQ HKISFFLVV+GV+ G+GSHGID GI I   +G  ++ KGG   G +   +FF + +Y   LT +AA++T++F+PGV GSGIPAMKYMMDTDDLAKKLRSF+L A+ VKA GL+L  GGGLNVGREGP
Sbjct:  499 SETMKTMSRSGTP--------NSRCGTPGSSAGGR-SRGGASASVASSYINSLGRGASEDGRGASGGTMKRPSARLQNEAKHFSDQKRGVTTSYKSEELYKQYHKISFFLVVMGVVIGLGSHGIDEGIQIFVHLGEDIMEKGGALLGGSTGAKFFCFLLYDIILTGIAAMLTAYFSPGVEGSGIPAMKYMMDTDDLAKKLRSFTLVAVVVKACGLMLAAGGGLNVGREGP 719

[Close]

BLAST of mRNA_H-paniculata_contig2262.6022.1 vs. uniprot
Match: D7FQ35_ECTSI (Chloride channel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ35_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 3.990e-56
Identity = 140/274 (51.09%), Postives = 179/274 (65.33%), Query Frame = 0

Query:  187 GSPGMAWGVDQGDIAVAQQDKVED---LEALENGNGHVVWPR--SETAKTVSQTGTPXXXXXXXTSSRSVAPLTYVARRPSRAG---SMSSSYLDS------GEVDPQG----RQPSARIRNEAKHVSEQKRGVTTSYKSEEQSKQAHKISFFLVVLGVLTGVGSHGIDIGIVILGDVGNWVVTKGGEASGENPMIRFFLYWMYVFTLTAVAALMTSFFAPGVMGSGIPAMKYMMDTDDLAKKLRSFSLTALFVKASGLLLVGGGGLNVGREGP 442
            G     WG  + D    +Q +  D   L+ALE G G     R  SET KT+S++GTP        SSR   P +    R SR G   S++SS+++S      G+    G    ++PSAR++NEAKHVS+QKRGVTTSYKSEE  KQ HKISFFLVV+GV+ G+GSHGID GI +   +G  ++ KGG   G +   +FF + +Y   LT +AA++T++F+PGV GSGIPAMKYMMDTDDLA KLRSF+L A+ VKA GL+L  GGGLNVGREGP
Sbjct:  451 GGAAADWGAGRPDGYHLRQREGGDTTSLDALEAG-GVARHHRGSSETMKTMSRSGTP--------SSRCGTPGSSAGGR-SRGGASASVASSHINSLGRGASGDGGGAGGGTMKRPSARLQNEAKHVSDQKRGVTTSYKSEELYKQYHKISFFLVVMGVVIGLGSHGIDEGIELFVHLGEEIMEKGGALLGGSTGAKFFFFLLYDIILTGIAAMLTAYFSPGVEGSGIPAMKYMMDTDDLANKLRSFTLVAVVVKACGLMLAAGGGLNVGREGP 714

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig2262.6022.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig2262.6022.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JIC8_9PHAE	6.090e-57	55.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FQ35_ECTSI	3.990e-56	51.09	Chloride channel protein n=1 Tax=Ectocarpus silicu...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001807	Chloride channel, voltage gated	PRINTS	PR00762	CLCHANNEL	coord: 423..442 score: 45.1 coord: 389..406 score: 39.22
IPR001807	Chloride channel, voltage gated	PFAM	PF00654	Voltage_CLC	coord: 377..442 e-value: 1.0E-6 score: 28.3
IPR014743	Chloride channel, core	GENE3D	1.10.3080.10		coord: 301..442 e-value: 2.1E-17 score: 65.2
IPR014743	Chloride channel, core	SUPERFAMILY	81340	Clc chloride channel	coord: 312..442
None	No IPR available	PANTHER	PTHR45720	FAMILY NOT NAMED	coord: 272..442
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 344..368
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 320..343
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 394..413
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 369..393
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 436..442
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..319
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 414..435
None	No IPR available	TMHMM	TMhelix		coord: 412..434
None	No IPR available	TMHMM	TMhelix		coord: 321..343
None	No IPR available	TMHMM	TMhelix		coord: 369..391

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig2262	contig	H-paniculata_contig2262:7546..19102 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig2262.6022.1	mRNA_H-paniculata_contig2262.6022.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig2262 7543..19102 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig2262.6022.1 ID=prot_H-paniculata_contig2262.6022.1|Name=mRNA_H-paniculata_contig2262.6022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=442bp
MKQGVIRPHRRQPSRPSVVDLFNLIVPAEEARATELSPSPHQPDWRQNID
EAQVAFDPQGPSGSCDDDTTCDDCGDTGAGGEQWADVIGQKVERQVSPAV
TKSTSPGGRNATFVAARARNKTPLMALFEEPETEELDMAGDTTYGGIYSG
ALTSTNGARMTDKLGFSQKFGDAFGTVAVRRPSSGPGSPGMAWGVDQGDI
AVAQQDKVEDLEALENGNGHVVWPRSETAKTVSQTGTPASKSGTPTSSRS
VAPLTYVARRPSRAGSMSSSYLDSGEVDPQGRQPSARIRNEAKHVSEQKR
GVTTSYKSEEQSKQAHKISFFLVVLGVLTGVGSHGIDIGIVILGDVGNWV
VTKGGEASGENPMIRFFLYWMYVFTLTAVAALMTSFFAPGVMGSGIPAMK
YMMDTDDLAKKLRSFSLTALFVKASGLLLVGGGGLNVGREGP

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001807	Cl-channel_volt-gated
IPR014743	Cl-channel_core