mRNA_H-paniculata_contig2262.6022.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2262.6022.1
Unique NamemRNA_H-paniculata_contig2262.6022.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2262.6022.1 vs. uniprot
Match: A0A6H5JIC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC8_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 6.250e-57
Identity = 128/230 (55.65%), Postives = 162/230 (70.43%), Query Frame = 1 
Query:  679 SETAKTVSQTGTPXXXXXXXTSSRSVAPLTYVARRPSRAG---SMSSSYLDS----GEVDPQG------RQPSARIRNEAKHVSEQKRGVTTSYKSEEQSKQAHKISFFLVVLGVLTGVGSHGIDIGIVILGDVGNWVVTKGGEASGENPMIRFFLYWMYVFTLTAVAALMTSFFAPGVMGSGIPAMKYMMDTDDLAKKLRSFSLTALFVKASGLLLVGGGGLNVGREGP 1329
            SET KT+S++GTP        +SR   P +    R SR G   S++SSY++S       D +G      ++PSAR++NEAKH S+QKRGVTTSYKSEE  KQ HKISFFLVV+GV+ G+GSHGID GI I   +G  ++ KGG   G +   +FF + +Y   LT +AA++T++F+PGV GSGIPAMKYMMDTDDLAKKLRSF+L A+ VKA GL+L  GGGLNVGREGP
Sbjct:  499 SETMKTMSRSGTP--------NSRCGTPGSSAGGR-SRGGASASVASSYINSLGRGASEDGRGASGGTMKRPSARLQNEAKHFSDQKRGVTTSYKSEELYKQYHKISFFLVVMGVVIGLGSHGIDEGIQIFVHLGEDIMEKGGALLGGSTGAKFFCFLLYDIILTGIAAMLTAYFSPGVEGSGIPAMKYMMDTDDLAKKLRSFTLVAVVVKACGLMLAAGGGLNVGREGP 719
[Close]
BLAST of mRNA_H-paniculata_contig2262.6022.1 vs. uniprot
Match: D7FQ35_ECTSI (Chloride channel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ35_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 4.100e-56
Identity = 140/274 (51.09%), Postives = 179/274 (65.33%), Query Frame = 1 
Query:  562 GSPGMAWGVDQGDIAVAQQDKVED---LEALENGNGHVVWPR--SETAKTVSQTGTPXXXXXXXTSSRSVAPLTYVARRPSRAG---SMSSSYLDS------GEVDPQG----RQPSARIRNEAKHVSEQKRGVTTSYKSEEQSKQAHKISFFLVVLGVLTGVGSHGIDIGIVILGDVGNWVVTKGGEASGENPMIRFFLYWMYVFTLTAVAALMTSFFAPGVMGSGIPAMKYMMDTDDLAKKLRSFSLTALFVKASGLLLVGGGGLNVGREGP 1329
            G     WG  + D    +Q +  D   L+ALE G G     R  SET KT+S++GTP        SSR   P +    R SR G   S++SS+++S      G+    G    ++PSAR++NEAKHVS+QKRGVTTSYKSEE  KQ HKISFFLVV+GV+ G+GSHGID GI +   +G  ++ KGG   G +   +FF + +Y   LT +AA++T++F+PGV GSGIPAMKYMMDTDDLA KLRSF+L A+ VKA GL+L  GGGLNVGREGP
Sbjct:  451 GGAAADWGAGRPDGYHLRQREGGDTTSLDALEAG-GVARHHRGSSETMKTMSRSGTP--------SSRCGTPGSSAGGR-SRGGASASVASSHINSLGRGASGDGGGAGGGTMKRPSARLQNEAKHVSDQKRGVTTSYKSEELYKQYHKISFFLVVMGVVIGLGSHGIDEGIELFVHLGEEIMEKGGALLGGSTGAKFFFFLLYDIILTGIAAMLTAYFSPGVEGSGIPAMKYMMDTDDLANKLRSFTLVAVVVKACGLMLAAGGGLNVGREGP 714
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2262.6022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIC8_9PHAE6.250e-5755.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ35_ECTSI4.100e-5651.09Chloride channel protein n=1 Tax=Ectocarpus silicu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2262contigH-paniculata_contig2262:7543..19102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.1
Seed ortholog evalue3.3e-53
Seed eggNOG ortholog2880.D7FQ35
KEGG koko:K05011
KEGG TC2.A.49.2.12,2.A.49.2.13,2.A.49.2.6,2.A.49.2.7
KEGG Pathwayko04978,map04978
Hectar predicted targeting categoryother localisation
EggNOG free text desc.voltage-gated chloride channel activity
EggNOG OGsCOG0038@1,KOG0476@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons6
Model size1330
Cds size1326
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.4351182-UTR-H-paniculata_contig2262:7542..75451622929628.4351182-UTR-H-paniculata_contig2262:7542..7545Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2262 7543..7545 +
1691480942.1793373-UTR-H-paniculata_contig2262:7542..75451691480942.1793373-UTR-H-paniculata_contig2262:7542..7545Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2262 7543..7545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.4474013-CDS-H-paniculata_contig2262:7545..81601622929628.4474013-CDS-H-paniculata_contig2262:7545..8160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2262 7546..8160 +
1691480942.193253-CDS-H-paniculata_contig2262:7545..81601691480942.193253-CDS-H-paniculata_contig2262:7545..8160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2262 7546..8160 +
1622929628.4595256-CDS-H-paniculata_contig2262:14748..150081622929628.4595256-CDS-H-paniculata_contig2262:14748..15008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2262 14749..15008 +
1691480942.2036576-CDS-H-paniculata_contig2262:14748..150081691480942.2036576-CDS-H-paniculata_contig2262:14748..15008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2262 14749..15008 +
1622929628.4728086-CDS-H-paniculata_contig2262:15477..156241622929628.4728086-CDS-H-paniculata_contig2262:15477..15624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2262 15478..15624 +
1691480942.2143486-CDS-H-paniculata_contig2262:15477..156241691480942.2143486-CDS-H-paniculata_contig2262:15477..15624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2262 15478..15624 +
1622929628.4854434-CDS-H-paniculata_contig2262:16659..168281622929628.4854434-CDS-H-paniculata_contig2262:16659..16828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2262 16660..16828 +
1691480942.2225604-CDS-H-paniculata_contig2262:16659..168281691480942.2225604-CDS-H-paniculata_contig2262:16659..16828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2262 16660..16828 +
1622929628.4974844-CDS-H-paniculata_contig2262:18130..182081622929628.4974844-CDS-H-paniculata_contig2262:18130..18208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2262 18131..18208 +
1691480942.2326539-CDS-H-paniculata_contig2262:18130..182081691480942.2326539-CDS-H-paniculata_contig2262:18130..18208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2262 18131..18208 +
1622929628.5105965-CDS-H-paniculata_contig2262:19045..191021622929628.5105965-CDS-H-paniculata_contig2262:19045..19102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2262 19046..19102 +
1691480942.2473154-CDS-H-paniculata_contig2262:19045..191021691480942.2473154-CDS-H-paniculata_contig2262:19045..19102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2262 19046..19102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2262.6022.1prot_H-paniculata_contig2262.6022.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2262 7546..19102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2262.6022.1

>prot_H-paniculata_contig2262.6022.1 ID=prot_H-paniculata_contig2262.6022.1|Name=mRNA_H-paniculata_contig2262.6022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=442bp
MKQGVIRPHRRQPSRPSVVDLFNLIVPAEEARATELSPSPHQPDWRQNID
EAQVAFDPQGPSGSCDDDTTCDDCGDTGAGGEQWADVIGQKVERQVSPAV
TKSTSPGGRNATFVAARARNKTPLMALFEEPETEELDMAGDTTYGGIYSG
ALTSTNGARMTDKLGFSQKFGDAFGTVAVRRPSSGPGSPGMAWGVDQGDI
AVAQQDKVEDLEALENGNGHVVWPRSETAKTVSQTGTPASKSGTPTSSRS
VAPLTYVARRPSRAGSMSSSYLDSGEVDPQGRQPSARIRNEAKHVSEQKR
GVTTSYKSEEQSKQAHKISFFLVVLGVLTGVGSHGIDIGIVILGDVGNWV
VTKGGEASGENPMIRFFLYWMYVFTLTAVAALMTSFFAPGVMGSGIPAMK
YMMDTDDLAKKLRSFSLTALFVKASGLLLVGGGGLNVGREGP
back to top

mRNA from alignment at H-paniculata_contig2262:7543..19102+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2262.6022.1 ID=mRNA_H-paniculata_contig2262.6022.1|Name=mRNA_H-paniculata_contig2262.6022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11560bp|location=Sequence derived from alignment at H-paniculata_contig2262:7543..19102+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGATGAAGCAGGGTGTTATCAGGCCGCATCGCCGACAGCCCTCGAGACC
GAGCGTCGTGGACCTCTTCAACCTCATCGTCCCCGCGGAGGAAGCAAGAG
CAACTGAACTGTCGCCATCGCCTCATCAACCTGACTGGAGACAAAATATC
GACGAAGCTCAAGTTGCTTTTGACCCGCAAGGCCCTAGCGGCTCGTGCGA
TGACGATACTACTTGTGACGACTGTGGAGATACTGGAGCAGGTGGCGAGC
AATGGGCGGATGTTATCGGGCAAAAGGTTGAGCGGCAGGTCTCCCCCGCG
GTGACCAAGAGCACATCACCGGGCGGCCGGAATGCTACCTTTGTGGCTGC
CAGGGCGAGGAACAAAACGCCTCTCATGGCATTATTTGAGGAACCGGAGA
CGGAGGAATTGGACATGGCTGGAGACACCACCTATGGTGGTATATATTCG
GGGGCTTTGACCTCTACCAACGGGGCTCGAATGACGGACAAGCTCGGCTT
TTCGCAGAAATTTGGGGACGCGTTTGGTACGGTGGCGGTGCGGCGCCCTT
CTAGTGGTCCTGGGAGCCCTGGTATGGCATGGGGAGTTGATCAAGGAGAT
ATAGCTGTCGCACAGCAGGTGAGAGAAGAGCTAAAGTAGGCCACATGATG
TATTGAACTGTCTCTGCTGGCAAGATGTCTTGTTGGATCTGTAATTTTGG
ACTCTGCTGTCACACGCACCTGTCTAAAAACAAGTATTTAGCTGTGCTAC
TGTAAACTTGACTGGCTGGACTGTGTACTACTCTTGGTTATCATAATTTC
ACTACACACACGATACACCTGTCCACAGTTTTGTGTACCCCGTGTATCTC
CTTGAATTTTCTGGTCACGATGACGAACATTAATCGTCGTGACTTGGAGT
ATCGGGTCAGGTAGAGTTGCAGCGTCTCTTTCCGATGCACGCAGAGCCAG
ATTCTGAAGGCTGGTTCTTACTGATGGTGCATTTACATGTTTGCACAAAA
GAGGAACGGTCTGAACTGCACCTGCTGGTGGTGCCACTGGTTCGTTATTA
ATAGTATTACAAGTAAGATGCCAAAACAAATCAAATTTCTCTCAAATTCA
TTGATAATTTTCTCTGACCCGTCCAGTGTAGATGTTTCACCGATAGAGGC
TCTAGCAGTCTCACACAATTTTGCCCCGCGAAAGCTTGGCGTTGGTGTGT
GCTTGTTGTGCTTGGTTCACCTGCCAAACTGCATACTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTTTGTTTCTGTGAGAAGTTTCTGGGT
TGGCAAGTGTGCACTGAACATAAGGATGTTTCACCTCTGATATTTAAGAA
CAAATGTTGAACTGCTGCAGAAGATCCCCTGTAATTCATGTCCATGGTTT
GTGCCTCGTACCCGCTTTTTTACATGGGCTCTCAGAGCTGCGTTTCCGTT
CTAGGCTCCTGTCGTCTATCGTGTGACGCTCGTGACCAAGCGTATAATTA
TAGAGAAGATATGGTAGTGTCAAACATTGTCCTATGTTTGCAACAGGCCG
AGTGCGTACGGTGCCCCAAGAACAACTACCGTTGGTGTTGCGTGCGATGT
TTTTAGCATCATAGATGATCGTCACATGAGATAGGATGACGGTATTTTCT
GTTGGGCTGCAAAGAGGGTTGCATTCGGCAAAATCGATACAGACAGTAGC
TTTCGTTCAAAGAGGGAGTAACATGGTGTTGCGTGCGATGTTTTTAGCAT
CATAGATGATCGTCACATGAGATAGGATGACGGTATTTTCTGTTGGGCTG
CAAAGAGGGTTGCATTCGGCAAAATCGATACAGACAGTAGCTTTCGTTCA
AAGAGGGAGTAACATGACTAGTACACCACATGCCCGTAACACGATCGTAC
TGCACTGCACGGCTCTAATTTACAACATTTTCCGTGAGAAGTCTGGAACA
CTTGGCTCTGCTGTTTCATTGCCTCTCTTCTGTTCTCCACTCCAGTAACA
ACAATCGTACCATGTACATGAATAGCAGCTCACTGACTATTGCTGAACCT
GGCGAGGTAAACCCACCCATAAGACTTGAATCTTTTCGCTTTCTCAGGTT
CACGTATTATTGTTGTCTACTCCACTACTATGATCCACTGCAGTTGAACT
TCAGGCTATATAAACCCGCAAGAGCTATCAAGGAACGATCAGATCTAAAG
TTAATCTGCGGGCGTGCTTGGGCCGCGTGCTCTCGCAACCCTTTATCCGG
GGTTTTCGCATGTATGCAATGAACACATTTTATTGAAGTGAAAGCACGTT
TATTTTCATCGCGATAGGATACAGACATTATTGGCGTTATGTGCCTCACA
TATGTTACAGCGCGTATACATTATACCGGAAGAAGTAGTCTTCGATATAG
ACAAGGAAGGAAATATTTACACCGTCTGTAGTTGCCCCTAATTGCGTACA
AGAAAGACTCTCTTCAAGAGCTGTTGCGCACAATGAGGTGACATTGTTCT
ATCGTCATGATCTGTCTGTCACGACTCGTTTGGAGCAGGCTCACGGCTTC
TGTATTCGCATACAGGGGCTATTGCCGCGGCAATCACGAGCGATGATAGG
ACCCTGCCGATGTGCCTTCCTCTGTTCATTGTTCTGCCGCAGCTCCAGTA
ACACTGTGTAGATGTCTGCTATAATCGCAAGCTGTGGTCTCTCTTTGTTT
CTTCCGATATACAATTAACGATAGACTCTGTCACCGTTCCAACCAATGTG
TGTACTCCAGGTTGTCAGGTGTACTATCTCCACACGAAGTATATGTATCG
TTAAGGCTGCAGCGACCGGCCTTTTTATCCTTGGGGGGGGGAAATGTATG
AAGAACGAGCCCCGTGTAGCCGGGTGTCCAATCCCCTCCTTGTATACCAA
TTTCTATGTGCTATGTCTGAATATGGGAGAAAATTTCTGTTCTGCGATTG
ACTCCTTCAGTTTGAACGGGACTGTTATTCTCCAGTAAGAGCTTGCTGCC
CCACATTTCGGCTACTTCCTTTTATCTGCTACCCATTGTGTCTTGTGTGC
AGGATTGTGGCGGAGAACGAGTGCCTGTACTGTATTCTCTCGGACTCTCT
GTCCAAACTCTTCGCAACGGCTCAAATAGGAATAAGTTGGAAAGAATGTT
CACGAAATGGTCGAAGATAACGGTTGACAGTTCTCTTGTGTTTTATGGTC
CACGTTTTGCTGTAGCCCCGAAGCGAGCAGAAGCAGCGCCGGAACTTACA
CAAACAATAACTCTAGCCCACATCCCCTAGGCATAGTGTACGTTGGAGCT
CAAAGCCGATTTGCGCAACAAACGCACGCTGCGCACGCGTTAGAAGGGCT
CAAGGCGGCGACGTGGTGATGACCCCTCTTTTGGTTAGCATGCTAAGTGG
ATGTAGTCAGCCACTATGCTCGATCACTTGCAATAACAGTATTGTCACTT
AGTCCACTGCAGTTTCTTAAGCTGTACTCCTACTTCCGTACAAAGACTCC
CGATTGCTCGCACTTTCTGTTCCTCGAAAAGTGGGGCCTATTCACCTCGG
TGTTTGCCTGTTGAAACATTCACGGCTCTTCTATTTTGCGGTACATTTGC
GTTTTTTTGCAAGTTTGCGTGCCCGGTAACGCTGCGAGCCCCACCCTATC
CCTGGCCATCACCCCTAGCTATTCGTGCGTCAACTCGGACCCCGGTGGAG
CCTAAAGTCACCTAGACTCCGCACCGTGGCAAAGATCCGGGGGTCAGGTT
CGTGGAGCGGTCGCGCAGTACCTCACAGTAACACCAAGTACTAGGAAACC
ATGGATATATTTAAATTTGGATAAGGTGGGGTGATGACTACTGCACAATG
ATTTTTGTCCTTCGTGCAACAACCATCTTGGCCCATAGGACTCGCAGTTT
TCTCTCCAGGTGGTTTCAGAAGGCAAGGCACGGCTACGCCGGTGGCGCGC
GTGGCACTTGAAAATAACACTTGTATTAGAGAATGGAAACTGGTCCGAGG
TTAACGTCATCACTATCATCGTTGTCATCATCACCATACAACTAAATGAA
AGCTTCAACGTCGCACGGTTATCATTCACTGTGCGCCACACATTTAAAAT
CGTCGCTCTATGAGCAATCCTATATATATATATATATATAAATTTGTGTA
ACAATTTTAGTGCAAAAAAAAGGCCAACCATGGAGATTCTGGATCCTGAC
TAGACCACGTTGCGTATAAGGGTTCAAGAGCTCTGGCCCAGCAAGAGCAG
GAATTGTCACAAGCTTCTGAATGCCACAGGCTGTTTGGAACCAAACGTAT
TATGGTGTAATAACTACCCCGTCGGTTGAAACCGCACCTTGAGGGAAAAG
AAATACGCGTCGTCCGCGCGGGCTGAGGCGGACGATGTGAGTTTGCTTCG
CACCCAGCGTGTTCTCGAGTTCCTGTGCCTGCAGTAGCGTGCGTTGGCTT
CGCTGTCGCGCATGCCTAGTGGTTGCCGTAGTGCTATAGACACAATTATC
ACGTTAATTGTTTCATCGGCCTGTATGCTTGAGTAATGATTGCGTTTTTA
ACGCGCTGTACAGAGACACTTCATGGAGTATTCCTACGGTAATTCCTTGA
TCAGCTTGCATGCTTGAAAGGAACGAATGCGTTTTTTGTATCGTACGGAT
TCGTCAGAAAACGTTTTAATATTAATAGTCTGCCCATGTAGAACACATGT
GCCAAGCACTGTGAACACATTTGCTGGCGATAAAGTAACTTCCCTCCCTA
AACGTTGGATACATGTATCCAATTCCCTTCAACACGACTCGCCAAACGGT
CCTTCTCGCTGTGATGCTTCGCGAGCCAGAGGCACCCTCTGCGTAGGTGC
AGATCAACTGTGCTCGACTGTTGGAACTGTCTGTAGGGGATTAGTTAAAA
ATATTGTTATTATATGACGGATACGCCATTACCATGTGTCATACTCTTTT
TTACATATCCCAAATCCTGCGGCTCTATCGGATATCAAGAAGGCTTCTGG
CTACTCACATCAGTAGCTGCTTGCATGAATCGCATTTGCATAAACAGATT
TTTTTTTAATTGAAAAAAAAACGGTGTGGTACAATATCTGGCGGGAGGAT
AGGCGTACTTTACATATCGTGATTCTCAGACCATTCCCCACGCGTCCTCG
GGAGGACGGAGATTTTCCCCTACCTCTTCGGCGCGAGGGGGGGGGTGTTA
TTTCCCGTAGGTATTTCGGTATACGTTTCCACCCATGTGAATACTCAAGA
TCAACCATCCAAGCATTTTTCGCCAGAGAGGTGTGTGGTTGTTGCTCCGA
CTCTTTTCCTTTTCCCCTGGGTAAATGCTGCTTTTCCCCGGAACACTACT
TTTAATAACCATAATTTAGCGTTGAATTTTAATAATGCCGGGTACCCCCA
GGTTTTTTTACCCGTACAGTATTACGAGCGCTCGTGCCCTCACAATGTGT
TATGATCTCTCCGTCCGGGTCGATGGTCTTCACCGGATTGTCGTATTCCG
GTCAGCGACCTATCTGTCAGTAATCTGACAACTTGCGCTGACGTGGAACT
CGCGCGTGACTAGGCCTGGAGCATCTATTTCTATTTATGGGCTCGCTCGC
CCCCCTCTTTCTCAGTATATATTTCACTGCCCACTGAGACTCGCCCTTGG
TCTCGAGTCGCAACATAAGTGGGTCTAACTCAACTGTTTGGGAGCCTTCA
CGAAAGGAGATCAGCTGTCGGCACGCTCTACGGAAGGAGCTCAGCCCCCG
ACTATCCATCCGTCGCGGATTCGTGAAGCGTCTCTCCTCACACGCGTGCG
GCGAGACTTCCGTTGGCGACACTCGGTGTAACTTGGTAGGTTGTGTACTA
TCAAGAGATGGAGGATGGTGTTGAGCGTTCGGAAGACCATGTCCCTCCAG
ACGAAGAAGAGGAAAAATGCGAGGAGTCCAGCCAGCAGCAGCAGCCTTCG
CTACTGGCGGAGCAAAGTCGGTCTTCGTCCGTGCCTACTCGAGAACACAT
GGAGGCTGTCGTATGCGCACAATGTCTCGGTAGTGGCCGCTTTAGAGCAC
AAAATACTCGAGTTTTTGTATCAAGTCTCAATATTAATTTTTATATATAT
ATATATTTGTTTTGTTTTGTTTTTATACATGTAGCTCTAGAGTTGCAAAC
GTCCCACTGCCCCGACATTGTGCGCATCTCTGCCTCAAGTCATGAGCCAC
CAGGCCGCTCTCACCCGCGCGTGAGCAGACCTGGGACCCTGCGTTCTAGT
AGGAAGAAAGTTTAGAAGACGTATGGCTTGGTTCAGTTTCCAGAAGAAGT
GGAGCTTGTTATGTTGTCCCGTGAACATTCAATCGATTCCCGCGAGATTC
GATTCTGTTTTTAGGGTCTGTAATGTGTCCGAGAAATGATCGGAGAAATA
TATATATATATATATTACATAGGTATGGCTCTTGGATCACAAATGCCCCA
CTGCCAAGACGTTGCGCGCATTACCCCAGAGTCACAAGCCGTGGGGCCAC
TTCCAGCAGCGCGTGAGCAGATCTGGGACCCTGCGTTTTAGTAGAAGAAA
ATTCTTGCAGACGCAGAAATTGGTTAGGTTCCTTGAAAATGTGGTACTTG
TTATATCCTCTCGTGTACATACATGTGTGCATCTTTCTTTATTGTGGAAT
AAAGAATTCACGCGCTTCCAAAATTCCCCTATGCCCCGCGGCATCTTTAC
TGTTACTTACTTTTCTTGGTCGGTAAATCTGGGGCCCTGTGTTTGAATAC
AAGGGAATTATAGAGAACGGTGAAAATGGTTAGGTTTGGACAAGACGTGG
AACTTGTTATGTTCTCTCGCGTACGAGTGCAAAATTACTGTTTGTTATGC
ACATAAGAAAACACACGCGCTTCGGTTTTTCTTGACGCGGCATCATTTCT
GGTAATTTTCACCGTGAGCAGACCTAGGACCCCACCTTTTACCAGAAAGG
AATTTTTTTTTTCAAATCGTGATGTTCTCTCGTGTACATATGTACAGTGT
GTGCGTTATTATTCATTGGGAAAACAAAGAAGCACAAGAAAAAAATGTGC
TTGATAAATTCCCCGACGTCCTGCAACATACATCATCACTTGGACTTCCC
GTTCGCCAGCAGAAAGAAATATGTAATTCATATATTACACCATTTTTCAA
AAATCAAATCTCCTGAGCAAACCCGTACCCCCCCCCGGGCGCGTCGGGCA
CCTCAGGACAAGGTGGAAGACCTGGAGGCACTGGAGAACGGAAATGGGCA
TGTCGTGTGGCCGAGATCTGAAACAGCTAAAACTGTTTCGCAGACGGGAA
CCCCCGCCTCCAAGTCCGGCACGCCGACGTCCTCGCGGAGCGTGGCCCCT
CTCACTTACGTGGCGCGGCGTCCGTCGCGCGCCGGGTCAATGTCGTCGTC
TTATCTGGACTCTGGGGAAGTGGATCCACAGGGTAGGCAGCCTTCGGCAA
GAATTCGGAACGAAGCGTGAGTGGTTACTGTACTGTACTCTACTGCAATT
GTGACGTTGCGGAATCGATCATTAGGAGGAACGCCGTACTGTAAGTTGGT
TTTTCGGAGGTTGAGCTGCCTCGCTGCGAGGTGATTGTTCTGTTTTACTT
GCATATAGCATCCACCATCGGTTTTAGGTATACTGTCCTTGTTCTCTAGC
CGTGGAGTACATGCACGACGTGCGTGCGCGCACAGGACCCTTTGCTTTGT
TAAACCTGCTGTTGAGGTAACACTTAATTTATGGTCTATTTTTGGTTTTT
CCAAAAAGTACGCCCGAACGAGGTAGGCCTTGTTGTGGCTACCCGCACAA
ACGATACGGAAAGGAGCGTGTGATAAATGAGTAACAGCTGGATTCGGGAG
CTACACCCTCACCCCCCTCCCCCTGCGCAGGCAGAAATTGTATCAATTGC
ATGCCCCCCCCCCCCCCCCCCCCGATGATGCGCAGGAAGCACGTATCGGA
GCAGAAGCGAGGCGTGACGACTTCTTACAAGAGTGAGGAGCAGTCCAAGC
AGGCACACAAGATATCTTTCTTTTTGGTGGTGCTCGGCGTCTTAACGGGC
GTGGGATCTCATGGCATCGACATTGGGATAGTGTGAGCCCCCCCCCCCCC
CCCCCCGGGATATGGGATTCCAAATTTTTGAGCATGTCCATTTATCATCA
CGTGTATGTTTGGATTGACCTCAAAACATGAATGGGTGGTCACGGTAAAT
GTCCTTAAATAGATGTCTTACAAGATTGAAATTAATGTCCTACAAGCGTG
TTGAAGTCCTGTTTTGGCGTGCAAATCGTTGGTCATCTTCCAAACAATAC
TCCCTGGCTGTACATAATCTAAATTTGTCACTCCATACCGTCGCACAAAG
GCAAACACTCACTACGGACAGGGCGCTTGGTCTGCTTGTCGCTCTTGTCG
AGGGCGACCGTGGTTCACAGAATGTAATGCCCCCATGGATAATTTTATTG
GAAATCGATCATCTCGAAAACTACCGTGCTACTCTAGCCACGCCGAGGTG
CCTCATTGAAATTGGGGAAAACATGTCGCATTTGTCGATAGGCGGGTTCT
TTTTTCGACAGCGCAGAGTCGCTGGTCTCGAGGAAACCGAGCGTGGTGAA
AAAAATTCGGTTTGAAATTTCACTGTAGCCTACGGCGCGTTGGCTGTAGA
CGACCACTGGGACTGAATCTACCACTACCTGTGTTCGTCCCGGTCGGCTG
TGGGCATGACGGCATACCCAGTGACAGCTAGCTCTGCGCGCAGAGTAGCG
AGAAGGGGTCGTGTGGTCGCCGTCGTCCATATTTGGTTTCATTCATTGCC
TCTTCCCCGTTCTCTCTCGGCAGATCGTTTTTTTCGAGATAACTGTCAGC
GGAGTAACACGAGCGCCTTTGTCGTGGTTTGTTTAGAGGAACACGCCCCT
CACAGTAGTGTAAAGACGCCTCGAAAGCAGAGAGAGAGGGAGAGGGAGGG
AGGGGGAGAGAGACGTGTCGCTAATGCCACGTTTTTTTCTCGTGTTCGTT
GAATTTTGCTCGGTTGCGCGATGCACACACCCTCGCATATTTGATTTCCT
GGCTTGGTTACCCACGCACGCGCGATGATGGTAAATGCCCCTGTGGACCT
CGCGGGGCTGGCAACAGCATACTAGGCGATGTGGGAAATTGGGTGGTGAC
AAAGGGGGGGGAAGCCTCTGGGGAAAACCCGATGATACGTTTTTTCTTAT
ACTGGATGTATGTTTTCACGCTGACGGCGGTGGCGGCGCTGATGACGTCG
TTCTTTGCTCCGGGCGTCATGGGGTCTGGGATTCCGGTGAGAGATGGATT
CGTAGTCTCTTTATTGGGAGGGAAATGCCATGATCCTATTATGTGCACGT
GTAATGTCAAAGGTTTGCATGACCGGCTGAAAATAACACTGCATTGTTAC
CGTGCAACGCTGCACGAGCCAGACGTTATCCTAGCAGGGGTGTTCATGGA
ACATATATCAAACTTGAAACAAAGTTGGCATCGATGACAAGAGCAAGAGC
GTTTTAGTTCCTACTCCCCTCCCCCCTGCATTGATCCTGCGTGATCCTTA
AGATATAACCCGGTGAGGCCTTGATTCCGTTACAGCCTTTGCATTTCATG
TCCAAGTCAATTTTGAACAGCGAATCTCGGTGCGGTCGCAGCGAGTTGTT
CTGTTTGGGTCAAGGACGAAGTGCGGACTGGAATATAACTATACGGGCGC
AGCCTAGCCATGGTTCGGCTACAAGTAGAGAAGGAGGGAAATCGCGAAGC
TGTTGGACGCAAACGTAGTCGACGAGATATAAGTCGCGATTGACGTCAAA
TATTTTTTATGGAAGCACAGTATCAAATATCGACGCGTGCTTCATCGACT
CTCAAGTGATGTATGGGATGGTCATTTGCCGGTGTTTGTGAATTATGACC
AATCCTTTACGGATCTAATCTCTCTGGTATGCTTCAATCGATTCGCAAGA
ATTGTTTAGGAAAGGAACATCACAGATTGTTCTCTTCACAGATAACCTCG
TGTGCTCGTCGCGAAATCGAAGTTTGGGTGGTTGTTATGCTAACGCTTCG
GAAGGGTTCTATAATCGTGGCGATTGTGGAGCTCATGTTCATCTCGTTAC
GGACCAATCTGAGTGCTTGACAGCGGTCGTTGAGTCAAATCTCAACAGTG
CCACGTGGCATCTTGTGTGTCTGCAACCCACTGTCCTATAGCGGAGACGG
TACATCGAAATCCAGAAACATTTCACACGGCGTATGAAAACCAATGGCAT
GGATGACGCGGCTTCTGTACCCCAACCTACTATCAGATTATGACAATACC
ATCCGTTGGTACATTGTGCACGACTCTGCCCATAGTGTGAGTTCGCAGTG
TCACACACCACACGGGCGCACGGTGGGTATTGTAGCTCTCAAAAAGCGGA
CAAAATAGTTGCCCTTGTTTGTGTCCCCGGGACTGCAAATGTCAAGCTTG
CCGCAGCACGCAATTTCGAGAAGTAGCGCGCTTATGGAGGAAAGCAAGCT
ACCACAAACACAACGGCCGCAAGTAGACATTGAACAGCTTCTAAGAGTTC
GGGCTCGCTGTGTGATAACATCTTGACTATTGATACAGGCTATGAAGTAC
ATGATGGACACGGACGATCTGGCTAAAAAACTGAGGTCCTTCTCTCTCAC
CGCGCTATTTGTCAAGGTGAGAGAAACACGGAGTCGGTCTTCAGCAAGAT
GAAGCGAGACTGGTCTCTCCCCGCAGTGCCAGCGTAATTGTACCTGTATA
GACAGTGTCTAACTGGCAGGATAGGCGATGCCAAACGGGCGACAAGATTG
GCGGCAGTGCAACGTAGCCCTCGCGCTCACCAGAGCCCCCCCTCTCCAGT
GTTTTCAGAGACGCTTGAGTAGCACTGTCATCATGTAAGTACACTTGACG
TAACCCCCTTCCTCCCTCGTTATGTTGGTTGCTTGATATTGATCAGCCCA
TGCAGCTCTGAAGCACGAATGTGCTGCGTGACCTCGAGATGGAAACTAGC
GGAGGTAGTAAACATGGCACGTCAATCACCCCGACGAACAACGGCATATT
TTTTCAAGTCCGATTTTCTCCTGAGAATCAAGAAAAGAGCCTTGACTGTC
GAAAGGAGCACGTCTGGATATCTAGTGACGGATGTATTTTGATGACATAT
TTCCAACGACACACGCCACTTGATCGTCGCAAGTTCGGTGGTTGCTAAGA
AAATGTAGTTTTGAAACGCTTCAACATCATGGATGACATACCCCGCAAAG
TACGGTAAGGACATCTTTTCGGAACATACTTTCAAATCTCGTGTCAAGTG
AATAATCAAAAACGAATCTTGGTGCGAGCGCAGCGAGCCTTTGTGCGTGT
GTCGGGGATCATGATAAATCACGGACTGCACGGGCGTAGTATCGAAACGT
CCTCTAGAAGTTTCATTCATCCCGTAAGTTTATTCCCTCTTCTCGCTGCC
TACCATCCGTCGACCTCCGGGCTTGTTTGGCATCTTGCTTTCATCCGGGA
CAGGCGTCGGGGCTTCTACTTGTTGGGGGAGGTGGGCTGAATGTGGGCAG
GGAAGGTCCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2262:7543..19102+

>mRNA_H-paniculata_contig2262.6022.1 ID=mRNA_H-paniculata_contig2262.6022.1|Name=mRNA_H-paniculata_contig2262.6022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2652bp|location=Sequence derived from alignment at H-paniculata_contig2262:7543..19102+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCAGGGTGTTATCAGGCCGCATCGCCGACAGCCCTCGAGACCGAG
CGTCGTGGACCTCTTCAACCTCATCGTCCCCGCGGAGGAAGCAAGAGCAA
CTGAACTGTCGCCATCGCCTCATCAACCTGACTGGAGACAAAATATCGAC
GAAGCTCAAGTTGCTTTTGACCCGCAAGGCCCTAGCGGCTCGTGCGATGA
CGATACTACTTGTGACGACTGTGGAGATACTGGAGCAGGTGGCGAGCAAT
GGGCGGATGTTATCGGGCAAAAGGTTGAGCGGCAGGTCTCCCCCGCGGTG
ACCAAGAGCACATCACCGGGCGGCCGGAATGCTACCTTTGTGGCTGCCAG
GGCGAGGAACAAAACGCCTCTCATGGCATTATTTGAGGAACCGGAGACGG
AGGAATTGGACATGGCTGGAGACACCACCTATGGTGGTATATATTCGGGG
GCTTTGACCTCTACCAACGGGGCTCGAATGACGGACAAGCTCGGCTTTTC
GCAGAAATTTGGGGACGCGTTTGGTACGGTGGCGGTGCGGCGCCCTTCTA
GTGGTCCTGGGAGCCCTGGTATGGCATGGGGAGTTGATCAAGGAGATATA
GCTGTCGCACAGCAGATGAAGCAGGGTGTTATCAGGCCGCATCGCCGACA
GCCCTCGAGACCGAGCGTCGTGGACCTCTTCAACCTCATCGTCCCCGCGG
AGGAAGCAAGAGCAACTGAACTGTCGCCATCGCCTCATCAACCTGACTGG
AGACAAAATATCGACGAAGCTCAAGTTGCTTTTGACCCGCAAGGCCCTAG
CGGCTCGTGCGATGACGATACTACTTGTGACGACTGTGGAGATACTGGAG
CAGGTGGCGAGCAATGGGCGGATGTTATCGGGCAAAAGGTTGAGCGGCAG
GTCTCCCCCGCGGTGACCAAGAGCACATCACCGGGCGGCCGGAATGCTAC
CTTTGTGGCTGCCAGGGCGAGGAACAAAACGCCTCTCATGGCATTATTTG
AGGAACCGGAGACGGAGGAATTGGACATGGCTGGAGACACCACCTATGGT
GGTATATATTCGGGGGCTTTGACCTCTACCAACGGGGCTCGAATGACGGA
CAAGCTCGGCTTTTCGCAGAAATTTGGGGACGCGTTTGGTACGGTGGCGG
TGCGGCGCCCTTCTAGTGGTCCTGGGAGCCCTGGTATGGCATGGGGAGTT
GATCAAGGAGATATAGCTGTCGCACAGCAGGACAAGGTGGAAGACCTGGA
GGCACTGGAGAACGGAAATGGGCATGTCGTGTGGCCGAGATCTGAAACAG
CTAAAACTGTTTCGCAGACGGGAACCCCCGCCTCCAAGTCCGGCACGCCG
ACGTCCTCGCGGAGCGTGGCCCCTCTCACTTACGTGGCGCGGCGTCCGTC
GCGCGCCGGGTCAATGTCGTCGTCTTATCTGGACTCTGGGGAAGTGGATC
CACAGGGTAGGCAGCCTTCGGCAAGAATTCGGAACGAAGCGACAAGGTGG
AAGACCTGGAGGCACTGGAGAACGGAAATGGGCATGTCGTGTGGCCGAGA
TCTGAAACAGCTAAAACTGTTTCGCAGACGGGAACCCCCGCCTCCAAGTC
CGGCACGCCGACGTCCTCGCGGAGCGTGGCCCCTCTCACTTACGTGGCGC
GGCGTCCGTCGCGCGCCGGGTCAATGTCGTCGTCTTATCTGGACTCTGGG
GAAGTGGATCCACAGGGTAGGCAGCCTTCGGCAAGAATTCGGAACGAAGC
GAAGCACGTATCGGAGCAGAAGCGAGGCGTGACGACTTCTTACAAGAGTG
AGGAGCAGTCCAAGCAGGCACACAAGATATCTTTCTTTTTGGTGGTGCTC
GGCGTCTTAACGGGCGTGGGATCTCATGGCATCGACATTGGGATAGTGAA
GCACGTATCGGAGCAGAAGCGAGGCGTGACGACTTCTTACAAGAGTGAGG
AGCAGTCCAAGCAGGCACACAAGATATCTTTCTTTTTGGTGGTGCTCGGC
GTCTTAACGGGCGTGGGATCTCATGGCATCGACATTGGGATAGTCATACT
AGGCGATGTGGGAAATTGGGTGGTGACAAAGGGGGGGGAAGCCTCTGGGG
AAAACCCGATGATACGTTTTTTCTTATACTGGATGTATGTTTTCACGCTG
ACGGCGGTGGCGGCGCTGATGACGTCGTTCTTTGCTCCGGGCGTCATGGG
GTCTGGGATTCCGCATACTAGGCGATGTGGGAAATTGGGTGGTGACAAAG
GGGGGGGAAGCCTCTGGGGAAAACCCGATGATACGTTTTTTCTTATACTG
GATGTATGTTTTCACGCTGACGGCGGTGGCGGCGCTGATGACGTCGTTCT
TTGCTCCGGGCGTCATGGGGTCTGGGATTCCGGCTATGAAGTACATGATG
GACACGGACGATCTGGCTAAAAAACTGAGGTCCTTCTCTCTCACCGCGCT
ATTTGTCAAGGCTATGAAGTACATGATGGACACGGACGATCTGGCTAAAA
AACTGAGGTCCTTCTCTCTCACCGCGCTATTTGTCAAGGCGTCGGGGCTT
CTACTTGTTGGGGGAGGTGGGCTGAATGTGGGCAGGGAAGGTCCGGCGTC
GGGGCTTCTACTTGTTGGGGGAGGTGGGCTGAATGTGGGCAGGGAAGGTC
CG
back to top