mRNA_H-paniculata_contig2260.6021.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2260.6021.1
Unique NamemRNA_H-paniculata_contig2260.6021.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2260.6021.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 4.900e-42
Identity = 85/217 (39.17%), Postives = 124/217 (57.14%), Query Frame = 1 
Query: 1627 TIDLSGHVLGMKKGMTGAVNDKSIVRFDKTVQAVREGEPYRSKTYKLRDKDGVEQVEKGIYPIVDGGYHQWRSLVCLAKEAATRKELAWSKRLSRPK---ECFFGILKGRFRILELPILFKESAQVDKVVWTCCILGNMRHLFDGLKLHEPDMD*AGLDGLLDAWLHEDRTMNFGTNGRNSNGRPENVEVEDDFFTMKRRLVMRYT*RLESNEVAWL 2268
            T+D +  VL +  G TG+ NDKSI+R+D  V  +RE   Y  K + + + DG     KG Y +VD GYH+W +L+  +K    + +LA+SKRL   +   ECFFGI+KG FRIL+L I + +   +D V +TCCIL NM H +D     E + + AG  GL +AW H           + S+   E+VEVE  F T +++L+  +  R   N++AWL
Sbjct:   24 TVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWL 240
[Close]
BLAST of mRNA_H-paniculata_contig2260.6021.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.110e-41
Identity = 91/198 (45.96%), Postives = 120/198 (60.61%), Query Frame = 3 
Query: 1044 DAEDEDGPHPKKQRRVCARPLYSESAWGRMP---QSPDITDPNSRDARRVRRRFRIPYSLFVDLMKVVQEGQWFPKREGHVDVTGRRMAPVELKVPASLQILGIGNSFDDIGQLSLMSGSTAQRAFHTFCKRFAEDLFHGWIKLPTEDALTATMKAYDAVGFTEAVGSPDVTHIAWGCTSASHTHLYTGKEGFPTLAY 1628
            D ED++     K+RRV  R  Y++S W +     +    TD  +R+ARR R  FR+PY  FV L+++V++  WFP   G  DVTGR+  PVELKV A LQIL  GN F DI  +S +S  T    FH FCK FA +L+  ++ LPT + L   M+ YD +GF  AVGS DVTHI WG    +   +YTGKEG PT+A+
Sbjct:   83 DTEDDEASREVKRRRVYVRKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPT--GESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAF 278
[Close]
BLAST of mRNA_H-paniculata_contig2260.6021.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.750e-40
Identity = 86/217 (39.63%), Postives = 125/217 (57.60%), Query Frame = 1 
Query: 1627 TIDLSGHVLGMKKGMTGAVNDKSIVRFDKTVQAVREGEPYRSKTYKLRDKDGVEQVEKGIYPIVDGGYHQWRSLVCLAKEAATRKELAWSKRLSRPK---ECFFGILKGRFRILELPILFKESAQVDKVVWTCCILGNMRHLFDGLKLHEPDMD*AGLDGLLDAWLHEDRTMNFGTNGRNSNGRPENVEVEDDFFTMKRRLVMRYT*RLESNEVAWL 2268
            T+D +  VL +  G TG+ NDKSI+R+D  V  +RE   Y  K + + + DG     KG Y +VD GYH+W +L+  +K    + +LA+SKRL   +   ECFFGI+KGRFRIL+L I + +   +D V +TCCIL NM H +D     E + + AG  GL +AW H           + S+   E+VEVE  F T +++L+  +  R   N++AWL
Sbjct:  265 TVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWL 481
[Close]
BLAST of mRNA_H-paniculata_contig2260.6021.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 7.150e-39
Identity = 82/230 (35.65%), Postives = 124/230 (53.91%), Query Frame = 1 
Query: 1627 TIDLSGHVLGMKKGMTGAVNDKSIVRFDKTVQAVREGEPYRSKTYKLRDKDGVEQVEKGIYPIVDGGYHQWRSLVCLAKEAATRKELAWSKRLSRPK---ECFFGILKGRFRILELPILFKESAQVDKVVWTCCILGNMRHLFDGLKLHEPDMD*AGLDGLLDAWLHEDRTMNFGTNGRNSNGRPENVEVED-------------DFFTMKRRLVMRYT*RLESNEVAWL 2268
            T+D  G  L +  G TGA NDK+I+R+D  V  +R    Y  + YKLR  +G E+  +G + I+D  YH+W +L+  +K   + K+ A+S+ L   +   ECFFGILKGRFRIL+L + + +   +D + +TCCIL NM H FDGL + + + D  G  G  DAW H+  T       +     P+  E E+             D   +KR+L+  +  R + N++ WL
Sbjct:   24 TVDHVGRALAVTNGFTGATNDKTIIRYDSGVNNIRTESQYTEREYKLRKVNGTERTRRGCFLIMDNWYHEWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFDENTDWTGSAGHHDAWEHDPLTDYTSVGSKGVLLLPKEGEEEECGEGGHVRKERHPDHAELKRQLIESFAFRKKINDITWL 253
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BLAST of mRNA_H-paniculata_contig2260.6021.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.260e-38
Identity = 91/218 (41.74%), Postives = 129/218 (59.17%), Query Frame = 1 
Query: 1627 TIDLSGHVLGMKKGMTGAVNDKSIVRFDKTVQAVREGEPYRSKTYKLRDKDGVEQVEKGIYPIVDGGYHQWRSLVCLAKEAATRKELAWSKRLSRPK---ECFFGILKGRFRILELPILFKESAQVDKVVWTCCILGNMRHLFDGLKLHEPDMD*AGLDGLLDAWLHEDRTMNFGTNGRNSNGRPENVEVEDDFFTMKRRLVMRYT*RLESN-EVAWL 2268
            T+D SG VL + +G TGA NDK+I+R+DK V  +R    Y  + YKL  +DG +  EKG Y +VD GYH+WR+L+  +K    R +L +SKRL   +   EC+FGILKGRFRI +L I F +   +D V +TCCIL NM H FD       + + AG  GL +A    D   ++ + G + +G+ E VEVE  F  ++ +LV  +  R E   ++ WL
Sbjct:  190 TVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNA-ADRDPNTDYSSVG-SMDGQHEAVEVETGFGALRSKLVTNFVYRREKKRDIVWL 405
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BLAST of mRNA_H-paniculata_contig2260.6021.1 vs. uniprot
Match: A0A6H5JRQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ7_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.540e-37
Identity = 82/197 (41.62%), Postives = 114/197 (57.87%), Query Frame = 3 
Query: 1071 PKKQRRVCARPLYSESAWGRMPQSPDIT-DPNSRDARRVRRRFRIPYSLFVDLMKVVQEGQW--FPKREGHVDVTG-RRMAPVELKVPASLQILGIGNSFDDIGQLSLMSGSTAQRAFHTFCKRFAEDLFHGWIKLPTEDALTATMKAYDAVGFTEAVGSPDVTHIAWGCTSASHTHLYTGKEGFPTLAYDRPLGAC 1649
            PK++R V  R  Y    W RM +  D+  DP++R+A++ RRRFR+PY  F+ L+  V+ G W  F   E  +   G RR  PVE KV A L+ILG GN FDD+ +++ M  +T    FH F +RFA + F  W+++P ED L   MK YD VG + A+GS D THI W     S    + GKEG+ TL ++  +  C
Sbjct:   49 PKRRRTVRPRADYRTLPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNEDELKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSHIGKEGYATLVFNVAVSHC 245
[Close]
BLAST of mRNA_H-paniculata_contig2260.6021.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.460e-35
Identity = 86/201 (42.79%), Postives = 110/201 (54.73%), Query Frame = 3 
Query: 1038 SSDAEDE--DGPHPKKQRRVCARPLYSESAWGRMPQSPDITDPNSRDARRVRRRFRIPYSLFVDLMKVVQEGQWFPKREGHVDVTGRRMAPVELKVPASLQILGIGNSFDDIGQLSLMSGSTAQRAFHTFCKRFAEDLFHGWIKLPTED--ALTATMKAYDAVGFTEAVGSPDVTHIAWGCTSASHTHLYTGKEGFPTLAY 1628
            S + ED   D P P+  R    R      AW +M +  D+ D NSR +++ R  FR+PYS F+ L+ +V+   WF       D  GR   PVE KV A L ILG GN F  I Q+S MS +T Q  FH FCK FA +++   I LP+E    L   MK YD +GF+ A+GS DVTHI W     +    YTGKEG PT+ Y
Sbjct:   33 SQEEEDTAPDLPRPRLSRTQRQRKDVKTCAWAQMLEDKDLEDSNSRTSKQFRLDFRVPYSFFLRLVALVKSKNWFVT--AGCDGAGRHSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGY 231
[Close]
BLAST of mRNA_H-paniculata_contig2260.6021.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.000e-34
Identity = 81/191 (42.41%), Postives = 113/191 (59.16%), Query Frame = 3 
Query: 1071 PKKQRRVCARPLYSESAWGRMPQSPDIT-DPNSRDARRVRRRFRIPYSLFVDLMKVVQEGQW--FPKREGHVDVTG-RRMAPVELKVPASLQILGIGNSFDDIGQLSLMSGSTAQRAFHTFCKRFAEDLFHGWIKLPTEDALTATMKAYDAVGFTEAVGSPDVTHIAWGCTSASHTHLYTGKEGFPTLAYD 1631
            PK++R V  R  Y    W RM +  D+  DP++R+A++ RRRFR+PY  F+ L+  V+ G W  F   E  +   G RR  PVE KV A L+ILG GN FDD+ +++ M  +T    FH F +RFA ++F  W+++P ED L   MK YD VG + A+GS D THI W     S    + GKEG+ TL ++
Sbjct:   49 PKRRRTVRPRADYRTLPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFACEIFPVWVRMPNEDELKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSHIGKEGYATLVFN 239
[Close]
BLAST of mRNA_H-paniculata_contig2260.6021.1 vs. uniprot
Match: A0A6H5KLF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLF8_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 4.420e-34
Identity = 84/202 (41.58%), Postives = 116/202 (57.43%), Query Frame = 3 
Query: 1050 EDEDG----PHPKKQRRVCARPLYSESAWGRMPQSPDIT-DPNSRDARRVRRRFRIPYSLFVDLMKVVQEGQW--FPKREGHVDVTG-RRMAPVELKVPASLQILGIGNSFDDIGQLSLMSGSTAQRAFHTFCKRFAEDLFHGWIKLPTEDALTATMKAYDAVGFTEAVGSPDVTHIAWGCTSASHTHLYTGKEGFPTLAYD 1631
            E+EDG    P PK +R V  R       W RM +  D+  DP++R+A++ RRRFR+PY  F+ L+  V+ G+W  F   E  +   G RR  PVE+ V   L+ILG GN FDD+ +++ M  +T  + FH F  RFA + F  W+++P ED L   MK YD VG T A+GS D TH+ W     S    + GKEG+ TL Y+
Sbjct:    4 EEEDGCDEEPRPKCRRTVRPRADDRALPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDGVKAGKWPGFTTNEFELGGRGTRRCIPVEIDV---LRILGRGNYFDDVSEVTGMGEATVNQLFHKFTGRFAREFFPVWVRMPNEDELKEIMKTYDEVGMTGAMGSMDGTHLQWTVCPYSERSSHVGKEGYATLVYN 202
[Close]
BLAST of mRNA_H-paniculata_contig2260.6021.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.410e-32
Identity = 82/201 (40.80%), Postives = 109/201 (54.23%), Query Frame = 3 
Query: 1041 SDAEDEDGP---HPKKQRRVCARPLYSESAWGRMPQSPDITDPNSRDARRVRRRFRIPYSLFVDLMKVVQEGQWFPKREGHVDVTGRRMAPVELKVPASLQILGIGNSFDDIGQLSLMSGSTAQRAFHTFCKRFAEDLFHGWIKLPTED--ALTATMKAYDAVGFTEAVGSPDVTHIAWGCTSASHTHLYTGKEGFPTLAY 1628
            S  E++  P    P+  R    R      AW RM +  D+ + NSR +++ R  FR+P + F+ L+ +V+   WF       D  GR+  PVE KV A L ILG GN F  I Q+S MS +T Q  FH FCK FA +++   I LP+E    L   MK YD +GF+ A+GS DVTHI W     +    YTGKEG PT+ Y
Sbjct:   33 SQEEEDTAPDLTRPRLSRTQRQRKYVERCAWARMLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKNWFAT--AGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGY 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2260.6021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTC6_9PHAE4.900e-4239.17DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JPH7_9PHAE1.110e-4145.96Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE1.750e-4039.63Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM6_9PHAE7.150e-3935.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE1.260e-3841.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRQ7_9PHAE1.540e-3741.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L642_9PHAE1.460e-3542.79Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K8I3_9PHAE2.000e-3442.41Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLF8_9PHAE4.420e-3441.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI1.410e-3240.80Transposon protein, putative, Pong sub-class n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2260contigH-paniculata_contig2260:14858..19340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue7.6e-15
Seed eggNOG ortholog44056.XP_009041040.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size2693
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2260.6021.1prot_H-paniculata_contig2260.6021.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2260 15988..17757 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.3470519-UTR-H-paniculata_contig2260:14857..159871622929628.3470519-UTR-H-paniculata_contig2260:14857..15987Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2260 14858..15987 +
1691480942.1175008-UTR-H-paniculata_contig2260:14857..159871691480942.1175008-UTR-H-paniculata_contig2260:14857..15987Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2260 14858..15987 +
1622929628.3831575-UTR-H-paniculata_contig2260:17757..179021622929628.3831575-UTR-H-paniculata_contig2260:17757..17902Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2260 17758..17902 +
1691480942.1513274-UTR-H-paniculata_contig2260:17757..179021691480942.1513274-UTR-H-paniculata_contig2260:17757..17902Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2260 17758..17902 +
1622929628.3950243-UTR-H-paniculata_contig2260:18483..193401622929628.3950243-UTR-H-paniculata_contig2260:18483..19340Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2260 18484..19340 +
1691480942.1635392-UTR-H-paniculata_contig2260:18483..193401691480942.1635392-UTR-H-paniculata_contig2260:18483..19340Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2260 18484..19340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.3577654-CDS-H-paniculata_contig2260:15987..161731622929628.3577654-CDS-H-paniculata_contig2260:15987..16173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2260 15988..16173 +
1691480942.1310124-CDS-H-paniculata_contig2260:15987..161731691480942.1310124-CDS-H-paniculata_contig2260:15987..16173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2260 15988..16173 +
1622929628.3720715-CDS-H-paniculata_contig2260:17382..177571622929628.3720715-CDS-H-paniculata_contig2260:17382..17757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2260 17383..17757 +
1691480942.1406739-CDS-H-paniculata_contig2260:17382..177571691480942.1406739-CDS-H-paniculata_contig2260:17382..17757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2260 17383..17757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2260.6021.1

>prot_H-paniculata_contig2260.6021.1 ID=prot_H-paniculata_contig2260.6021.1|Name=mRNA_H-paniculata_contig2260.6021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
MPQSPDITDPNSRDARRVRRRFRIPYSLFVDLMKVVQEGQWFPKREGHVD
VTGRRMAPVELKVPASLQILGIGNSFDDIGQLSLMSGSTAQRAFHTFCKR
FAEDLFHGWIKLPTEDALTATMKAYDAVGFTEAVGSPDVTHIAWGCTSAS
HTHLYTGKEGFPTLAYDRPLGACTWDEEGNDRSSER*
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mRNA from alignment at H-paniculata_contig2260:14858..19340+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2260.6021.1 ID=mRNA_H-paniculata_contig2260.6021.1|Name=mRNA_H-paniculata_contig2260.6021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4483bp|location=Sequence derived from alignment at H-paniculata_contig2260:14858..19340+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTAGTGTACACCTCGGGCGCAAGTCAGGTCGGCAGGGGGGGGGGATCAT
TTTGTTTAACGAAGACCGCTTCGCAAAAAAGCGGTGCAAAAATAGCGCGA
ATCAAAAACTTAACAATTGCATGTAATTTATGCATCCCTAGAGGTGCACA
ATCCATGAGTTGAAGTAGGGTTTCTCAAAAAAGGGAGGGCAAGTAATGCA
AAAAAACCCAAAACAAATGCCCAATCCCATCTTTCCTTAAACAAGGCGCT
CCACTACCGTAGGATAACTCGGAAATATCGTATGTGACGTACCCTTGCCC
TGGGTGACATGGTTTAGCACCCCCTACTCAACTTCCTTCCGCGATTTTCT
CGAGAGCTGTGAGATTTATTACGACACCCAAGTCAGATCATTGCGAAGAT
CTCGTCTAGATCTGGCCCTAACTTCGATTTCTCTTCATGAGTGCAAGTTC
TTGGTTCTCGACGTAGTCGAAGTCGCGAGAAAAGGAGAGGAGGGTTGACA
TACTGTCACGCCTATGGTACCAATTGTTTACAGTACCGCAGGATCACGCT
TAATTGCCTTTTTCGAACTATATCTCCTTCCTGTAGACACTACTTCTAAG
GCTAAGACCAACTCTTCTGTGACCATTTTTTTGCTGTTTCTCAATAAGAA
AAATGAAATGGATGAAAAAAATTGGGTGACACCACTCTATGGGCGGTTTT
CTCATCCAATTTTTTGGAAGAAAATTGGGAAACCGAGCAGAACCCTGGTT
TCATCCAATTTTTTAATGAAAAATTGGGTGAGTTTGCGAGCACCCAATTT
TTTCATTTGGCGCGCGTCGCGCGATTCGTCGCGCGTCTTGGGCGCGCGCA
TTGAAATTTAAATCACAGGAGGTGCATGCCGCACACAATGGGCTTCTGGC
AAGATGAGCTCTCTCCGTCAAAATGCTGTTGAGGCAGCTGTTGACACAGC
TTTCGCAGCTGCATCGACAGTGTTACTGCAGTTGAAAGACACTTCAGCGT
GTGTATATCTCATATTGGAGCAACCTCTGCGCGATGGTCGAGCGATGCTG
AAGATGAAGATGGGCCACACCCAAAGAAGCAGAGAAGGGTGTGTGCTCGG
CCGCTGTACAGTGAATCAGCATGGGGAAGGATGCCGCAGTCCCCCGATAT
CACGGACCCCAATTCGAGAGACGCCCGCCGCGTCAGGAGGCGCTTTCGTA
TACCCTATTCTTTATTCGTGGATCTGATGAAGGTAGTGCAAGAAGGACAA
TGGTTTCCGAAGAGAGAGGGGCACGTGGATGTCACCGGTCGCCGAATGGC
TCCTGTAGAGCTGAAGGTAAGCAGCACGACAACAGGCGATGTCGCATACA
GCGTTTCACGCTTGTTGTGCTTAATCATGCGCCTGAATAGGCCATGCTTT
GTGTTGTACGTGGCAGCCAATTTCCCTCAGTTCGCTGTTGTATTAAAATG
CTGTCTCACTCTTGATGTCTTCCACCATACAGTGCTGCCTCAGTTGTGCT
TGACTGTAGAGATGGTAAGATCTGTGTCTATGACTGTTTGACTGTGCATG
ACAGAAGTCGTCCTCCCATTTACAGTTCAGTACAATTGTGATGATGCGCT
AAATTGCATTGTACATTACTGTAGTGTCTGGCCTCATTCCTGTGCAGTAC
AACCCGTCCTGTCCTCGAACATACCATGGTACAGGAAGTATGGCCCTGCG
AAGCTATAGTACATTGAATAATATGGCGGTGCTGACGAAAAAAAATAAGC
TTGTTTTCAACGAGAGTTTTTTTCCCACCCAAGGCTGCCGAATCAGCCAG
AGTGTGGGGGATATAAATTGAAGCACTTAACCGTCTCGACAACATGCCGT
TTGAAAATTTCAAATTGGGCAACAGTCAGTTAACCGACAAGTTTAAGGAA
CCCCTTAAAGAAAAGTGTTATTTATTACTGGCTATTGTAAATACTGTAGT
CTCTTTTTTCGTGTCGGCAAGGTGTGCTGCGCACACATGGCGAGAATCGT
TGTTTCGTGATTTGCTTTGCTGGGTAAGGAATATTCAGACCGCCCAATTG
ATGCGGTGAGCCTATGCCTTAAGCATAACGCGATGCAATACAGAATCGAT
TTTGCTGTGGGTGCGTTAGATGTTTTTGTTTGTTTATTGGTAAGTTCGAT
GGATTACCCCGATTGATATCCCTTTTCTTGTGGTCCTTCTCTCTCGCGAA
GTTGCTTTGTCAGAGAGTGAATTACGAATTGTACACAATGGTCATACACC
GCGGACGCCAGGATGATATTCGCGATGGATTCTCTTCCATAGGGGTGTGT
TGGGCCCATTAGAACAGTGCCACCTTGCCTTTCTGAGGGCGATTGGTCTT
CGATAAGCCGAGGTGCGCGGTTGCAAGTATTTGTTTTTAGCGAGGCCATC
GCACTGGGAATATGAGCGTCGTCAATCAATTTCTCCTTAATAATATTTCG
CTATCCCAACCGCCGTCAGTACGGCCAAGTGTTTCATGCGATACCGTCAC
CCCTTCCGTCGCGACTGTAACACAGGTTCCGGCGAGCTTGCAGATTCTGG
GGATAGGGAATAGCTTCGATGATATCGGCCAGCTCTCCTTGATGAGCGGG
TCGACTGCCCAACGTGCGTTCCATACATTTTGCAAGCGTTTCGCTGAAGA
TCTTTTTCATGGGTGGATTAAACTCCCTACCGAGGATGCCCTCACAGCCA
CGATGAAGGCGTACGATGCGGTAGGCTTCACCGAGGCAGTAGGCTCGCCT
GATGTCACCCACATCGCATGGGGTTGTACCTCAGCGTCACATACCCATCT
CTACACGGGCAAGGAAGGATTCCCGACTCTCGCATACGATAGACCTCTCG
GGGCATGTACTTGGGATGAAGAAGGGAATGACCGGAGCAGTGAACGATAA
ATCCATCGTTCGTTTCGACAAGACAGTACAAGCGGTCAGGGAGGGTGAGC
CATACAGGTCGAAGACTTACAAGCTCCGCGATAAGGACGGCGTGGAACAG
GTAGAAAAGGGTATTTACCCCATTGTCGACGGAGGATATCACCAGGTAAG
TCATCTGCTGTTGTTTGGTGGTCATGGCTGCTGCACCACCGTACGGAAAT
GCGTCGTATAGTTTTACGTTATGCGGCGATAATTTATTCGTTTCTGTCAA
ACATACCCCGTTTAATGTTGTGTATCAACCACACCCGACCTACGATGTGC
GACTTTGTTGATCCTAACGTAAACGGGTGCCCGAGGTCCCACTTTGTGAG
CCGCAACTCTAGACTCACCGGACATTCGTTCAAATATTAGCACCAGATGA
GGTGCAAACTATGAGACAGCAAGCTTCCTTGACATAGGTAGCAACTACGC
GAAATCCGTAGGTTGTACCATGTGGCTTACCTTCTTCACAGCGGAGGCCA
TGCCACCGTCGACAAGGACTTTACTAGGACTTCTGTGTCTTTTTTTATGG
TCGGTGTTGATGTCGTCTTCAGCTTCAATTTTCTCTGTACCGCTCAGTGA
TCACTGATCAAGGCTGAGATAAATCGTACGAGCCGGGCGTTTCAATATCT
GACTCGGTTGGCCAGACGCCGCAGAAGAACAGTGTATCGACACCACTGAT
TTTATTGTTTCACCTCTTATTTGCAGTGGAGGAGTCTAGTGTGCCTAGCA
AAAGAAGCTGCAACTCGAAAGGAATTAGCGTGGAGTAAACGTCTCTCACG
TCCGAAAGAATGCTTCTTCGGCATTCTCAAGGGTCGCTTCAGAATTTTGG
AGCTGCCCATTCTTTTCAAGGAGTCCGCTCAGGTAGACAAGGTGGTCTGG
ACATGCTGTATCCTTGGCAACATGCGGCATTTGTTCGACGGACTGAAATT
GCACGAGCCGGATATGGACTGAGCCGGGCTGGATGGCCTCCTTGACGCAT
GGCTTCACGAAGATCGCACAATGAACTTTGGCACGAACGGTCGCAATTCG
AACGGGCGGCCAGAGAACGTCGAAGTCGAGGACGATTTTTTCACCATGAA
AAGGAGGCTAGTCATGCGCTACACATAGAGGTTGGAAAGCAACGAAGTGG
CTTGGCTGCGGTCGCAATCTGGTCAGAAGTGATTTGAGGGTGTAGATTGG
GCATGGTGCTGTATGGATTTTCATGTTTCGAGAGGATTTATGTTGTGACG
TTTGAGGGTTTGGTTGGCAGGATGAGCTGTAGCAAGCGACGTAATTGTCG
GGCATCTTGGATGAATGGCAGATGGGCCACGGAATGGCCGCCACAGCATT
TTTGCTAGGCATGATATGGCCCGCCCTGACTTTCCATGGTATCGTGATTA
ATTTTGCTGCGATGGTGGTTGTAGAGGCCTGTTGAGACGACTGCGTGTCT
AAGTAGTTCATGAAATATTTCATACATACATCGAGCGCTACTGTACAGAA
AATGATTGACGGAATAATTGACCTGTGTTGGTTAACGCACGACACGGGTG
GCTTTTAATAATATTGCAAGCAAGAGATATCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig2260:14858..19340+

>mRNA_H-paniculata_contig2260.6021.1 ID=mRNA_H-paniculata_contig2260.6021.1|Name=mRNA_H-paniculata_contig2260.6021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at H-paniculata_contig2260:14858..19340+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCAGTCCCCCGATATCACGGACCCCAATTCGAGAGACGCCCGCCG
CGTCAGGAGGCGCTTTCGTATACCCTATTCTTTATTCGTGGATCTGATGA
AGGTAGTGCAAGAAGGACAATGGTTTCCGAAGAGAGAGGGGCACGTGGAT
GTCACCGGTCGCCGAATGGCTCCTGTAGAGCTGAAGATGCCGCAGTCCCC
CGATATCACGGACCCCAATTCGAGAGACGCCCGCCGCGTCAGGAGGCGCT
TTCGTATACCCTATTCTTTATTCGTGGATCTGATGAAGGTAGTGCAAGAA
GGACAATGGTTTCCGAAGAGAGAGGGGCACGTGGATGTCACCGGTCGCCG
AATGGCTCCTGTAGAGCTGAAGGTTCCGGCGAGCTTGCAGATTCTGGGGA
TAGGGAATAGCTTCGATGATATCGGCCAGCTCTCCTTGATGAGCGGGTCG
ACTGCCCAACGTGCGTTCCATACATTTTGCAAGCGTTTCGCTGAAGATCT
TTTTCATGGGTGGATTAAACTCCCTACCGAGGATGCCCTCACAGCCACGA
TGAAGGCGTACGATGCGGTAGGCTTCACCGAGGCAGTAGGCTCGCCTGAT
GTCACCCACATCGCATGGGGTTGTACCTCAGCGTCACATACCCATCTCTA
CACGGGCAAGGAAGGATTCCCGACTCTCGCATACGATAGACCTCTCGGGG
CATGTACTTGGGATGAAGAAGGGAATGACCGGAGCAGTGAACGATAAGTT
CCGGCGAGCTTGCAGATTCTGGGGATAGGGAATAGCTTCGATGATATCGG
CCAGCTCTCCTTGATGAGCGGGTCGACTGCCCAACGTGCGTTCCATACAT
TTTGCAAGCGTTTCGCTGAAGATCTTTTTCATGGGTGGATTAAACTCCCT
ACCGAGGATGCCCTCACAGCCACGATGAAGGCGTACGATGCGGTAGGCTT
CACCGAGGCAGTAGGCTCGCCTGATGTCACCCACATCGCATGGGGTTGTA
CCTCAGCGTCACATACCCATCTCTACACGGGCAAGGAAGGATTCCCGACT
CTCGCATACGATAGACCTCTCGGGGCATGTACTTGGGATGAAGAAGGGAA
TGACCGGAGCAGTGAACGATAA
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