mRNA_H-paniculata_contig22599.6020.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22599.6020.1
Unique NamemRNA_H-paniculata_contig22599.6020.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22599.6020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22599contigH-paniculata_contig22599:3429..4153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size725
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22599.6020.1prot_H-paniculata_contig22599.6020.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22599 3636..4118 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.288232-UTR-H-paniculata_contig22599:3428..36351622929628.288232-UTR-H-paniculata_contig22599:3428..3635Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22599 3429..3635 +
1691480942.0926304-UTR-H-paniculata_contig22599:3428..36351691480942.0926304-UTR-H-paniculata_contig22599:3428..3635Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22599 3429..3635 +
1622929628.3152368-UTR-H-paniculata_contig22599:4118..41531622929628.3152368-UTR-H-paniculata_contig22599:4118..4153Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22599 4119..4153 +
1691480942.1087275-UTR-H-paniculata_contig22599:4118..41531691480942.1087275-UTR-H-paniculata_contig22599:4118..4153Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22599 4119..4153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.300234-CDS-H-paniculata_contig22599:3635..41181622929628.300234-CDS-H-paniculata_contig22599:3635..4118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22599 3636..4118 +
1691480942.1012528-CDS-H-paniculata_contig22599:3635..41181691480942.1012528-CDS-H-paniculata_contig22599:3635..4118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22599 3636..4118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22599.6020.1

>prot_H-paniculata_contig22599.6020.1 ID=prot_H-paniculata_contig22599.6020.1|Name=mRNA_H-paniculata_contig22599.6020.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
MSAPSVSPEDVTAPAPPTVPTSPRLSAAACRTYSPPLLTSACSIPRRVPT
PPEPVDMVAWSRWWDRRLRRFAGLPTSKKACSSAGWGCSRMFSNIHSPPL
SVSVQAWSQSSASIALSKKQVFRVLDFVAISIAACLLGICVSRGARCSFP
FSLTTVMACC*
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mRNA from alignment at H-paniculata_contig22599:3429..4153+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22599.6020.1 ID=mRNA_H-paniculata_contig22599.6020.1|Name=mRNA_H-paniculata_contig22599.6020.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=725bp|location=Sequence derived from alignment at H-paniculata_contig22599:3429..4153+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGATTACCGACCTTTCCTTGCAGTCGACGGGAGATCTTCCCTGGCGCA
TCGTGACCTCCTAGAACGTCGATATTCGGTGTAGGCAGCGATCCGTCTTC
GCTCCGTCCTCCGTGGGCCCACACGACCAGCCCGGGCGGCAGCATCGCAG
CTTGCTGTTCGGCGCTGACTCCTCCCTGTTCTGCCAACACGCGGAGAGTC
ACCCCCAATGAGTGCACCATCGGTGTCCCCGGAAGATGTGACCGCACCCG
CTCCCCCAACGGTCCCGACGAGTCCGCGATTATCTGCGGCAGCATGCCGC
ACATACTCCCCACCGTTGCTGACCAGCGCATGCTCCATACCGAGGCGAGT
CCCAACCCCCCCTGAACCGGTCGACATGGTGGCCTGGAGTCGCTGGTGGG
ACAGGAGGTTGAGGCGGTTCGCCGGGCTGCCGACGTCGAAGAAGGCGTGT
TCTTCTGCTGGTTGGGGATGTTCGAGAATGTTCTCCAACATCCATAGTCC
GCCATTGTCGGTTAGTGTCCAAGCTTGGTCGCAGAGTTCGGCATCCATCG
CCCTCTCCAAGAAGCAGGTCTTCAGGGTCCTAGACTTTGTGGCGATTAGC
ATCGCTGCTTGTTTATTGGGGATATGCGTTAGTAGGGGCGCAAGGTGCTC
CTTCCCCTTTTCCTTGACTACGGTGATGGCGTGCTGCTGAACGAATGCGT
CGGTCCCAATCGGTGCACCCACCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig22599:3429..4153+

>mRNA_H-paniculata_contig22599.6020.1 ID=mRNA_H-paniculata_contig22599.6020.1|Name=mRNA_H-paniculata_contig22599.6020.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig22599:3429..4153+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGCACCATCGGTGTCCCCGGAAGATGTGACCGCACCCGCTCCCCC
AACGGTCCCGACGAGTCCGCGATTATCTGCGGCAGCATGCCGCACATACT
CCCCACCGTTGCTGACCAGCGCATGCTCCATACCGAGGCGAGTCCCAACC
CCCCCTGAACCGGTCGACATGGTGGCCTGGAGTCGCTGGTGGGACAGGAG
GTTGAGGCGGTTCGCCGGGCTGCCGACGTCGAAGAAGGCGTGTTCTTCTG
CTGGTTGGGGATGTTCGAGAATGTTCTCCAACATCCATAGTCCGCCATTG
TCGGTTAGTGTCCAAGCTTGGTCGCAGAGTTCGGCATCCATCGCCCTCTC
CAAGAAGCAGGTCTTCAGGGTCCTAGACTTTGTGGCGATTAGCATCGCTG
CTTGTTTATTGGGGATATGCGTTAGTAGGGGCGCAAGGTGCTCCTTCCCC
TTTTCCTTGACTACGGTGATGGCGTGCTGCTGAATGAGTGCACCATCGGT
GTCCCCGGAAGATGTGACCGCACCCGCTCCCCCAACGGTCCCGACGAGTC
CGCGATTATCTGCGGCAGCATGCCGCACATACTCCCCACCGTTGCTGACC
AGCGCATGCTCCATACCGAGGCGAGTCCCAACCCCCCCTGAACCGGTCGA
CATGGTGGCCTGGAGTCGCTGGTGGGACAGGAGGTTGAGGCGGTTCGCCG
GGCTGCCGACGTCGAAGAAGGCGTGTTCTTCTGCTGGTTGGGGATGTTCG
AGAATGTTCTCCAACATCCATAGTCCGCCATTGTCGGTTAGTGTCCAAGC
TTGGTCGCAGAGTTCGGCATCCATCGCCCTCTCCAAGAAGCAGGTCTTCA
GGGTCCTAGACTTTGTGGCGATTAGCATCGCTGCTTGTTTATTGGGGATA
TGCGTTAGTAGGGGCGCAAGGTGCTCCTTCCCCTTTTCCTTGACTACGGT
GATGGCGTGCTGCTGA
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