prot_H-paniculata_contig2259.6017.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig2259.6017.1
Unique Name	prot_H-paniculata_contig2259.6017.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	382

Homology

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BLAST of mRNA_H-paniculata_contig2259.6017.1 vs. uniprot
Match: D7G4V7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4V7_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.420e-28
Identity = 72/189 (38.10%), Postives = 121/189 (64.02%), Query Frame = 0

Query:  181 EEKTRLDKLSEKIRTK----SSEQTIGVSEDGCEIITIYRSEEDVRLPSRLSSFANPILVSTLTAGFCLMLFEISRRELTKKLAVVAFALELAASMALSGIAFHAQQQYSYSTNMEPKTRIFLGRIRPVTICALAFFFSGVVLFAAAFMIEVVTELGIWWSATVAVLFFPSMVGGGIFIFTIAYMRRIS 365
            EE+ R+ ++ E IR +    +S + +G       +  I++ EED RL  RLS+F  PILV+TL +GF L+LF++++ +L ++LAV++F LE ++S  L  I+F  QQ Y++ST+++P TR FL ++  VT+ AL  F  GV+ F  +F++E   ELG+ W A + ++  P+M+ G +F+ +   +RR S
Sbjct:  233 EEQRRMSRVQELIRERRQSVNSSEQLGDEAGEDTVFEIHKMEEDSRLLVRLSAFNVPILVATLLSGFTLLLFDVAKTDLARRLAVLSFGLETSSSTMLCLISFRGQQLYAHSTDIKPLTRRFLRKMCNVTVLALVLFSLGVIAFVVSFVVEASEELGVGWLAVLGLVLCPTMLAGLMFVISTVQVRRHS 421

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig2259.6017.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig2259.6017.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G4V7_ECTSI	1.420e-28	38.10	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 75..105
None	No IPR available	COILS	Coil	Coil	coord: 179..199
None	No IPR available	COILS	Coil	Coil	coord: 114..148
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 282..301
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 302..326
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 327..331
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 260..281
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 332..360
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 249..259
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 361..381
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..229
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 230..248
None	No IPR available	TMHMM	TMhelix		coord: 227..249
None	No IPR available	TMHMM	TMhelix		coord: 259..281
None	No IPR available	TMHMM	TMhelix		coord: 334..356
None	No IPR available	TMHMM	TMhelix		coord: 302..324

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig2259	contig	H-paniculata_contig2259:6460..10336 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig2259.6017.1	mRNA_H-paniculata_contig2259.6017.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig2259 6450..12013 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig2259.6017.1 ID=prot_H-paniculata_contig2259.6017.1|Name=mRNA_H-paniculata_contig2259.6017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=382bp
MAVATKSRLNKMFPKKDSATSSGTLNVVDEEKGREPDIAPSNSTGPVDLQ
SLTPFFDHSRVGPSDEVLPEQDIPLQKLNTEINELAKKIEQLEKEINRVK
NAAESGVSFRGKEGEFLRKEEQDLREEKKQLRTEKEQLREEKLERIRSRR
QSALGSTGGQSRRVSILWANACIGDPDGVREEKTRLDKLSEKIRTKSSEQ
TIGVSEDGCEIITIYRSEEDVRLPSRLSSFANPILVSTLTAGFCLMLFEI
SRRELTKKLAVVAFALELAASMALSGIAFHAQQQYSYSTNMEPKTRIFLG
RIRPVTICALAFFFSGVVLFAAAFMIEVVTELGIWWSATVAVLFFPSMVG
GGIFIFTIAYMRRISTVENSHLKTKSRVPVE*