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Homology
BLAST of mRNA_H-paniculata_contig2259.6017.1 vs. uniprot
Match: D7G4V7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4V7_ECTSI) HSP 1 Score: 125 bits (314), Expect = 6.640e-27 Identity = 72/189 (38.10%), Postives = 121/189 (64.02%), Query Frame = 2
Query: 551 EEKTRLDKLSEKIRTK----SSEQTIGVSEDGCEIITIYRSEEDVRLPSRLSSFANPILVSTLTAGFCLMLFEISRRELTKKLAVVAFALELAASMALSGIAFHAQQQYSYSTNMEPKTRIFLGRIRPVTICALAFFFSGVVLFAAAFMIEVVTELGIWWSATVAVLFFPSMVGGGIFIFTIAYMRRIS 1105
EE+ R+ ++ E IR + +S + +G + I++ EED RL RLS+F PILV+TL +GF L+LF++++ +L ++LAV++F LE ++S L I+F QQ Y++ST+++P TR FL ++ VT+ AL F GV+ F +F++E ELG+ W A + ++ P+M+ G +F+ + +RR S
Sbjct: 233 EEQRRMSRVQELIRERRQSVNSSEQLGDEAGEDTVFEIHKMEEDSRLLVRLSAFNVPILVATLLSGFTLLLFDVAKTDLARRLAVLSFGLETSSSTMLCLISFRGQQLYAHSTDIKPLTRRFLRKMCNVTVLALVLFSLGVIAFVVSFVVEASEELGVGWLAVLGLVLCPTMLAGLMFVISTVQVRRHS 421
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-20_000160.1 |
| Exons | 6 |
| Model size | 2833 |
| Cds size | 1146 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2259.6017.1 >prot_H-paniculata_contig2259.6017.1 ID=prot_H-paniculata_contig2259.6017.1|Name=mRNA_H-paniculata_contig2259.6017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=382bp
MAVATKSRLNKMFPKKDSATSSGTLNVVDEEKGREPDIAPSNSTGPVDLQ
SLTPFFDHSRVGPSDEVLPEQDIPLQKLNTEINELAKKIEQLEKEINRVK
NAAESGVSFRGKEGEFLRKEEQDLREEKKQLRTEKEQLREEKLERIRSRR
QSALGSTGGQSRRVSILWANACIGDPDGVREEKTRLDKLSEKIRTKSSEQ
TIGVSEDGCEIITIYRSEEDVRLPSRLSSFANPILVSTLTAGFCLMLFEI
SRRELTKKLAVVAFALELAASMALSGIAFHAQQQYSYSTNMEPKTRIFLG
RIRPVTICALAFFFSGVVLFAAAFMIEVVTELGIWWSATVAVLFFPSMVG
GGIFIFTIAYMRRISTVENSHLKTKSRVPVE* back to topmRNA from alignment at H-paniculata_contig2259:6450..12013+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2259.6017.1 ID=mRNA_H-paniculata_contig2259.6017.1|Name=mRNA_H-paniculata_contig2259.6017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5564bp|location=Sequence derived from alignment at H-paniculata_contig2259:6450..12013+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTAGAGCCATGGCTGTTGCAACGAAGTCAAGGTTAAACAAAATGTTCC
CAAAAAAGGATTCGGCGACATCTTCTGGCACTCTGAACGTTGTCGACGAA
GAAAAAGGACGGGAACCCGATATCGCACCATCGAACTCGACTGGACCTGT
CGATTTGCAGAGCTTAACGCCTTTCTTCGACCATAGTCGTGTCGGGCCGA
GTGATGAGGTGCTCCCGGAGCAAGACATTCCGCTTCAAAAACTGAATACT
GAAATCAACGAGCTGGCGAAAAAGATTGAACAGCTGGAAAAGGCAAGTAG
GTGCACAGTCGGTGGCAGAGCGGGGTAGGGAAGAGAGTACTACTTGAAAA
AGATTGAACAGCTACAAAAGACACATGGGTACATAGTCAATGGCACAGCG
GCATAGGTGAGGGAGTAACACGCATCGAACGTATTTGATGCGGCAGCCTT
CACCACAGTATCTCGATGCTCTTCTCTCCCAAGCATCTTCGTTTTCGACA
TAGTCACCTAAAAATGTGCCTTGACGGTGATGAAAACGTGGTCCCGTTTG
TGAAACGAAGACTCTGCCCTCGTCTGACGCTGAGCTTACACAGGAGATAA
ATCGTGTGAAGAATGCTGCTGAAAGCGGTGTCTCGTTTCGTGGCAAAGAA
GGGGAATTTCTCCGAAAGGAAGAACAGGATCTCAGGGAAGAAAAGAAACA
GCTGCGCACAGAAAAGGAGCAACTTCGCGAAGAGAAGCTAGAGAGGATTC
GATCTAGGAGACAATCTGCATTGGGTTCTACTGGAGGTGGGAAACGGACA
CCGTCGTAAAGCCTTGTTTTGCAACTCCAGGAGCGGAAACTATCGCAGGG
TCAATGGTGTTTGCAGGGATATATACTTGTTTGACGGTCCTGATGGACCA
CAATTCTCTACACGCCAGTCTGTGCTGCGTGATTCCTCTCGGAGTGCGCA
AGTCTCAGCGTGCTTCGTGTCCAGAAGGGAACGGTTTGAATTTTCAAGTT
TTGAGATATTTTGATTTGATTGGGTAACTTTAGTCGTCACTGTTGACCCT
TTCGGGACGCAACCCTGTGAAATCTACTCTCCGAGATCTGTGTTCGGGTC
ATGTTTTTCATACGGTAGAAAATAGTGTTAATCGAACCTCGAAACGCAAC
CCATCGTAGATATATTTTGGGGTCCAAGATCTGCTTTTGGGTATTCCTGT
GGAATGCCCGCAAAACTGCTTTTTTTCATCATGAATTGGATGTAATCTTC
AACGGTGTTTCGAAAAGTACCACGTCCCGAATGGGTTAAGGACCTGTTAG
CTCGAGATCAAAGCCACAGAATGAGCAGGTACGATAAGTGGCATGCACTT
AACAAGAACAGCGGATAGGCATGTCGATTTTGTTACTTTTCACATCATCG
CTATCTGCACTAGACTGCGCACACGCCACAACGATCTAACGTGACCGAAA
AATTGCTGCAAGTCATGGGAGCAATCAGTATTCTCACAGTCACATACTGT
CAGGAGGAGCACAACAGCTCTTGTACTTAGGTCGTATTGCAATATCCACC
AGGAATTTCATTATTATCAATTGCCTTTGGCCCTGAACAAATGGTACTCA
TTTGGGCAGCCGCTAACCTCACCCCCACGCCCTGAATTCACGCCAATCCT
CCTGCCGCCTACGAATTACACTAGGACAATCGAGGCGAGTGTCCATCCTG
TGGGCGAACGCATGCATCGGCGACCCCGACGGAGTGCGCGAGGGTAAGGC
ATGCATTGTATACCTTCATTTTTACTCTAATGGCCCGACGAGCGTCGTAA
AGACTGTCCACCGGTGAGGCGCCTAGGATTTTCCGCCGGCTACAAGTATC
ATGATGGTGATCCACAGGAGCCATGTCGATGCCACGCGACGCCAGCAGCA
ATGAAGTCCTTTGATGGATTTTTTCTTGCACGTTGCGCATCGCATACAAT
CGTCCCCGCACACGCTTCCGCACTTCTCTCCGATATGGTGGAACACGTAT
TGGCTGGCGATTGCGCCTTATATATACACTCATTATTACGTGTTTTCGCC
GTTCTCGCGATCTCCCGATACCATCTGCTTTCTCTTTGGTCGACATGCTC
TTGCGGCAGAAAAAACAAGACTGGACAAGCTATCGGAGAAAATCAGGACT
AAGAGCTCCGAACAGACTATCGGTGTTTCTGGTGAGACAGAATGGTCCGT
ATAGACGCTCCGCTCCCTACATGAGAGTGACTGTACCTATGAAGCGGGAA
TTTAAAATTTAGATGTGTCTTGGCCGCACCGTCGTACTACTCAAACCCAA
CAAAATTTCGTTCCTGGGCAACAACATTGCGCGCTCTAACTCACCCTTGT
CCTGAATTTCACCCAGTCCTCTCAGCTGTCAACACTGTACTGAGGTCTTT
GTGCTGTAATAAAATCTGTGAAAATCCGACGGGCTGCACGAAATTGCTTG
TGGGTTCAATGTGCAAACATTGCACCCCCCGAACAAATACGAATGAAGTA
TTCGCCCCTATCCTTTATTCGTTTACAAGTCTATGAATGGTGACTCTACA
GATGGTCACCAGATGGTAGTATACCCGGCAAACAGTCACACGTTCAGGTC
GCGTTTATTTTCCGGATGGTACTGTACAGATTGAGTACTCTATCTGTTCG
AGCTTTTGGACGCTCCATGATATGTCGAGTACATTGCATATTATTGGCGT
CACATGGACATCTTCCCAAATTCAAGCAGACACAGTATTCATTCCAGATT
TCTTGTAATTAGTCGTTTCTTGTTTTCGTATTTGTCCAGGGGGCGAAGAA
TTGACCTATTCATTCGCGTGTAGCGTGGCATAAGCTCAAAAGGCTGACAG
GGAAAAATCGTGCTTGAGCTTGGTGACACCCCGATACGGCTACTCTCGCA
CGCCTGTCAGTCCAAAGGGACCGGGCGCGACCAACCACTGATACACCGAC
GCGATAGCATAGCAAGAGGTTGCTGCACTGCCATCCGTCTCAAATGCGAC
GCTCTACACATAGCTGTGTTCGATGCTACGATTTGTGCCCCCCCCCCCCC
CCCGAACAGAAGACGGATGTGAGATCATAACGATCTACCGTAGCGAGGAG
GACGTTCGTTTACCATCAAGGCTTAGCTCCTTCGCAAATCCGATCCTCGT
GTCTACATTGACGGCGGGTTTTTGTTTGATGTTGTTCGAGATCTCCAGGC
AAGTTAGTTCACGTTCGAGTTTTTGCGCTGGGCCTCGGATAAGTAGTTGG
TGATATTTATGGTATCCGTTGATGCCGCTGAACAACAACCAGCACCCTTT
CATTTTATCATCGGTGTTAATGATGTCCCTATCCTTGGTCGATGAATTCT
GCGGAGAAGCGCATACTAAATGCCACCAACACAAGCTGATGAGTAGCACT
AAAATAACTGACAATACGGAGGGCTGCGACTCGTTACTAGTGTAAACGAC
TTCCTTCCCCCCACCCACCCCCCCCCCCCCCCTCTTAAACGGCCAGACGG
GAACTCACGAAGAAATTGGCGGTTGTTGCCTTCGCCCTAGAGTTGGCGGC
TAGTATGGCGCTATCGGGCATCGCATTCCACGCGCAGCAACAGTACTCCT
ACTCAACCAATATGGAACCGAAGACTCGGATTTTCCTTGGTCGAATTCGC
CCCGTGACGATTTGCGCACTCGCTTTTTTCTTTTCGGGAGTTGTGCTGTT
CGCGGCGGCTTTCATGATCGAGGTGGTTACTGAGCTCGGGATTTGGTGGA
GCGCGACCGTTGCAGTCCTGTTCTTTCCGTCTATGGTCGGCGGAGGAATT
TTTATATTTACCATCGCTTATATGCGGCGAATTTCGACGGTCGAAAACTC
ACATCTAAAGACGAAGTCTAGGGTTCCGGTAGAGTAGAAAATGAGATGGA
CATCAGGGTGGTTGTACATGGCTCAAAATGTAATACGTGATTCAGTGGAG
ATAACCGTCGTCACTTGCGTGATAAATCGACCGGATTCTATGTGACGAAG
CGCAATGTAGTTTTCCCGAACGTCAAAATCGACGTATTTTGAGCGATTCG
GACTTCATCGAGGTTATTGCAAGTTTTCTCAATGAGATGGAAGTTATCAT
GAGAATCATCACGGTAGCGTCTTGGGATTTGCTAGCGACATAGCATCGAT
TCCTCTCGAGTATTACTGGCACTGTTGTTCGTTGCCATGGCTCTGCATCC
ACGTTTTTCTGCCGATGGTTTTGATGACTGAACTGCTTTGGTTTGCTGCT
GGTTATTGTCTGCCGATTTTAATTGTAACAATTGAGCGGTCTTGTGTCGC
TGCCGGTTATTGAAATAATTGAGTAGGTGTTAATTTTCTGGCGGTCATTG
TAACAATTGAGCAGGTTTCTGCAGCTGCCGGTTATTGAAATTATTGAGCA
GGTTGCTGTCCTGCCGGTCATTGAAATATTGGAGCAGTCTTCCGTTGCTA
CCGGTTATTACAATTGGGCGCCTCTCTTTCCTGTCGCGCATCGCATAATG
GAGTATTCTTGGGCTTGTGGTTCGTTATCATGTAACTAAGTCGATGCCCA
TGGCCGTCAGGTTCGCGTAGACTCCCCATCCACCGTTGAATATGGTACAA
CGAGTTGTCTACCTATACATACTTGATTTAGCTGGAAGGATAGGGATAGT
ATATTGATGTCGTCTGCTCATAAAAGGTGCTCCGCACCCAGCGCGTTGTT
TTCCACGCTGCAACGTTAGGCAAAAGCATCTAACGCTCTGCACATCTCAT
CTTGGTTCTAGTGAGTTCGCCGCCTACCATTTTGTTACTGAGCTTCCTAC
CCAAAACGCTTTGATATGGTGTAAGGTGACCGTTTTCATTACTACACTCC
AGCTATAAAAAGGCAGACGATTATGGCGTCAACTTGTTCTTCTCCCACTT
GAATTTTATCCAAGCCTGGAATTATTTCACTTCGGTCTCGATATTTAACG
CCGAACGTGAATCGACTTAGGGTGCGATGTGGGGAGAGGGAACCCGCTTT
GGTCGAGGCCGTTAACGGCTCGGTAAGCTGCGATTATTTCTTGACCTTGA
GAAATTTTGCGCGCACGATACCAGAGGTCGTCTGATCGTCCGTATTCCGT
GAGTTTTAGATGATACTGATAGGTTGTTAGGGCCTACTTCGTTCTTTGTG
GTGTCCCAGAATATTGTAAATTTTATATAGCCCGACGCGTGATGGACTCA
GTTCCGAGTGATTTAGGGCGGGTGACTAATGTGTCTCTTAACTTGGCCGA
ATCATGCGCTGGTAGCTATTCGCGTGGGCGATAGGGTGGGCTAAGTAAGT
CGAGACGAATGATTCTCCGCTCGTAATTTCACGCGGTATATTACGGGTGA
CAGCTGAGAATAGATGACGTACGTTCCACGCCAGGGGCGAAGCAATTTTG
GATTCGGCAGTTGAAGATATCCGAAGATGGATTCGCAAGCGACTGCTAGA
GATGGCGCTAGTAGCTAATAAGAATACCAACGAAACATGCTGTTCCAAAG
GATATAGATGGTAAATGATGGTTAAAAGGATCGCTTGAGGGCAAAAAAGG
CTTTTGAATAATGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig2259:6450..12013+ >mRNA_H-paniculata_contig2259.6017.1 ID=mRNA_H-paniculata_contig2259.6017.1|Name=mRNA_H-paniculata_contig2259.6017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2292bp|location=Sequence derived from alignment at H-paniculata_contig2259:6450..12013+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGTTGCAACGAAGTCAAGGTTAAACAAAATGTTCCCAAAAAAGGA
TTCGGCGACATCTTCTGGCACTCTGAACGTTGTCGACGAAGAAAAAGGAC
GGGAACCCGATATCGCACCATCGAACTCGACTGGACCTGTCGATTTGCAG
AGCTTAACGCCTTTCTTCGACCATAGTCGTGTCGGGCCGAGTGATGAGGT
GCTCCCGGAGCAAGACATTCCGCTTCAAAAACTGAATACTGAAATCAACG
AGCTGGCGAAAAAGATTGAACAGCTGGAAAAGATGGCTGTTGCAACGAAG
TCAAGGTTAAACAAAATGTTCCCAAAAAAGGATTCGGCGACATCTTCTGG
CACTCTGAACGTTGTCGACGAAGAAAAAGGACGGGAACCCGATATCGCAC
CATCGAACTCGACTGGACCTGTCGATTTGCAGAGCTTAACGCCTTTCTTC
GACCATAGTCGTGTCGGGCCGAGTGATGAGGTGCTCCCGGAGCAAGACAT
TCCGCTTCAAAAACTGAATACTGAAATCAACGAGCTGGCGAAAAAGATTG
AACAGCTGGAAAAGGAGATAAATCGTGTGAAGAATGCTGCTGAAAGCGGT
GTCTCGTTTCGTGGCAAAGAAGGGGAATTTCTCCGAAAGGAAGAACAGGA
TCTCAGGGAAGAAAAGAAACAGCTGCGCACAGAAAAGGAGCAACTTCGCG
AAGAGAAGCTAGAGAGGATTCGATCTAGGAGACAATCTGCATTGGGTTCT
ACTGGAGGAGATAAATCGTGTGAAGAATGCTGCTGAAAGCGGTGTCTCGT
TTCGTGGCAAAGAAGGGGAATTTCTCCGAAAGGAAGAACAGGATCTCAGG
GAAGAAAAGAAACAGCTGCGCACAGAAAAGGAGCAACTTCGCGAAGAGAA
GCTAGAGAGGATTCGATCTAGGAGACAATCTGCATTGGGTTCTACTGGAG
GACAATCGAGGCGAGTGTCCATCCTGTGGGCGAACGCATGCATCGGCGAC
CCCGACGGAGTGCGCGAGGGACAATCGAGGCGAGTGTCCATCCTGTGGGC
GAACGCATGCATCGGCGACCCCGACGGAGTGCGCGAGGAAAAAACAAGAC
TGGACAAGCTATCGGAGAAAATCAGGACTAAGAGCTCCGAACAGACTATC
GGTGTTTCTGAAAAAACAAGACTGGACAAGCTATCGGAGAAAATCAGGAC
TAAGAGCTCCGAACAGACTATCGGTGTTTCTGAAGACGGATGTGAGATCA
TAACGATCTACCGTAGCGAGGAGGACGTTCGTTTACCATCAAGGCTTAGC
TCCTTCGCAAATCCGATCCTCGTGTCTACATTGACGGCGGGTTTTTGTTT
GATGTTGTTCGAGATCTCCAGAAGACGGATGTGAGATCATAACGATCTAC
CGTAGCGAGGAGGACGTTCGTTTACCATCAAGGCTTAGCTCCTTCGCAAA
TCCGATCCTCGTGTCTACATTGACGGCGGGTTTTTGTTTGATGTTGTTCG
AGATCTCCAGACGGGAACTCACGAAGAAATTGGCGGTTGTTGCCTTCGCC
CTAGAGTTGGCGGCTAGTATGGCGCTATCGGGCATCGCATTCCACGCGCA
GCAACAGTACTCCTACTCAACCAATATGGAACCGAAGACTCGGATTTTCC
TTGGTCGAATTCGCCCCGTGACGATTTGCGCACTCGCTTTTTTCTTTTCG
GGAGTTGTGCTGTTCGCGGCGGCTTTCATGATCGAGGTGGTTACTGAGCT
CGGGATTTGGTGGAGCGCGACCGTTGCAGTCCTGTTCTTTCCGTCTATGG
TCGGCGGAGGAATTTTTATATTTACCATCGCTTATATGCGGCGAATTTCG
ACGGTCGAAAACTCACATCTAAAGACGAAGTCTAGGGTTCCGGTAGAGTA
GACGGGAACTCACGAAGAAATTGGCGGTTGTTGCCTTCGCCCTAGAGTTG
GCGGCTAGTATGGCGCTATCGGGCATCGCATTCCACGCGCAGCAACAGTA
CTCCTACTCAACCAATATGGAACCGAAGACTCGGATTTTCCTTGGTCGAA
TTCGCCCCGTGACGATTTGCGCACTCGCTTTTTTCTTTTCGGGAGTTGTG
CTGTTCGCGGCGGCTTTCATGATCGAGGTGGTTACTGAGCTCGGGATTTG
GTGGAGCGCGACCGTTGCAGTCCTGTTCTTTCCGTCTATGGTCGGCGGAG
GAATTTTTATATTTACCATCGCTTATATGCGGCGAATTTCGACGGTCGAA
AACTCACATCTAAAGACGAAGTCTAGGGTTCCGGTAGAGTAG back to top
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