mRNA_H-paniculata_contig22588.6016.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22588.6016.1
Unique NamemRNA_H-paniculata_contig22588.6016.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22588.6016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22588contigH-paniculata_contig22588:2230..2802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size575
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.7885303-UTR-H-paniculata_contig22588:2229..24871622929627.7885303-UTR-H-paniculata_contig22588:2229..2487Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22588 2230..2487 +
1691480941.9201803-UTR-H-paniculata_contig22588:2229..24871691480941.9201803-UTR-H-paniculata_contig22588:2229..2487Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22588 2230..2487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.8023012-CDS-H-paniculata_contig22588:2487..28021622929627.8023012-CDS-H-paniculata_contig22588:2487..2802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22588 2488..2802 +
1691480941.9290025-CDS-H-paniculata_contig22588:2487..28021691480941.9290025-CDS-H-paniculata_contig22588:2487..2802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22588 2488..2802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22588.6016.1prot_H-paniculata_contig22588.6016.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22588 2488..2802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22588.6016.1

>prot_H-paniculata_contig22588.6016.1 ID=prot_H-paniculata_contig22588.6016.1|Name=mRNA_H-paniculata_contig22588.6016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MSYPVHTVFFRVSRFPNFRFYYRQSVAKFSNFPCYSALGGGRVVLLIFTT
WNYISPFVLGRKHKNVEIRKSGNPENRTHKKNGNLEFQKFRECKNATMQC
TWRRS
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mRNA from alignment at H-paniculata_contig22588:2230..2802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22588.6016.1 ID=mRNA_H-paniculata_contig22588.6016.1|Name=mRNA_H-paniculata_contig22588.6016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=573bp|location=Sequence derived from alignment at H-paniculata_contig22588:2230..2802+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCGTACTGTACGGACGGCGTGTGCTTTCCTTCTAAAAGTTTACCTCTGC
TCCCGTCGTATAACCATTGTGGTCCATGCGACTATTGTAGCACTTTGAAA
GAAACACATTTCGTGCTCAAGAGCTTGACACGGTATAACTATATACGGAA
GAGGCATTACTCTAATCTAATCTACGAATTCATGCTGACTTTGCCATTTG
AAATGTAACGAATTTTTTTCCCTTCTTTCTTGCATTTCCTCAGAAGAGGA
TAACAACAATGTCCTACCCTGTTCACACTGTTTTTTTCCGGGTTTCCCGA
TTTCCGAATTTCCGTTTTTACTACCGGCAGTCGGTGGCAAAGTTTTCCAA
CTTTCCGTGCTACAGTGCACTTGGCGGCGGTCGGGTAGTTCTACTGATTT
TCACAACATGGAACTATATTTCACCATTTGTACTTGGTCGTAAACACAAA
AACGTGGAAATCCGGAAATCCGGAAATCCGGAAAATCGGACACACAAAAA
AAATGGAAATTTGGAATTTCAGAAATTTCGAGAATGCAAAAATGCAACAA
TGCAGTGCACTTGGCGGCGGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig22588:2230..2802+

>mRNA_H-paniculata_contig22588.6016.1 ID=mRNA_H-paniculata_contig22588.6016.1|Name=mRNA_H-paniculata_contig22588.6016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig22588:2230..2802+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCTACCCTGTTCACACTGTTTTTTTCCGGGTTTCCCGATTTCCGAA
TTTCCGTTTTTACTACCGGCAGTCGGTGGCAAAGTTTTCCAACTTTCCGT
GCTACAGTGCACTTGGCGGCGGTCGGGTAGTTCTACTGATTTTCACAACA
TGGAACTATATTTCACCATTTGTACTTGGTCGTAAACACAAAAACGTGGA
AATCCGGAAATCCGGAAATCCGGAAAATCGGACACACAAAAAAAATGGAA
ATTTGGAATTTCAGAAATTTCGAGAATGCAAAAATGCAACAATGCAGTGC
ACTTGGCGGCGGTCGATGTCCTACCCTGTTCACACTGTTTTTTTCCGGGT
TTCCCGATTTCCGAATTTCCGTTTTTACTACCGGCAGTCGGTGGCAAAGT
TTTCCAACTTTCCGTGCTACAGTGCACTTGGCGGCGGTCGGGTAGTTCTA
CTGATTTTCACAACATGGAACTATATTTCACCATTTGTACTTGGTCGTAA
ACACAAAAACGTGGAAATCCGGAAATCCGGAAATCCGGAAAATCGGACAC
ACAAAAAAAATGGAAATTTGGAATTTCAGAAATTTCGAGAATGCAAAAAT
GCAACAATGCAGTGCACTTGGCGGCGGTCG
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