mRNA_H-paniculata_contig2258.6013.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2258.6013.1 vs. uniprot
Match: D7FLZ5_ECTSI (40S ribosomal protein S4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLZ5_ECTSI) HSP 1 Score: 499 bits (1285), Expect = 2.500e-172 Identity = 240/261 (91.95%), Postives = 253/261 (96.93%), Query Frame = 1
Query: 409 GRGPKKHMKRLNAPKHWLLGKMEGVWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKIRTDVNFPAGFMDVVQIEKSGDLFRLLYNTKGHFVLHRINSEESKFKLCRVNKVEFTKNKIPYLVTHDGRTIRYPDPLIKVHDVVKIDLETGKPIETIKFEIGNVCMISRGRNAGRVGVMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRTMVSLPKGKGVKLSILEERAAKAKKALNN 1191
GRGPKKHMKRLNAPKHWLLGKMEG+WAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGK+RTDVNFPAGFMDVVQI+KSGDLFRLLYNTKG FVLHRI+ EESKFKLCRVNKVE +KNKIPYLVTHDGRTIRYPDPLIKV+D +K+DLETGK I+TIKFEIGNVCMI+RGRNAGRVG+MQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTR MVSLPKGKGVKL+ILEE+AAK KKA NN
Sbjct: 2 GRGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGRFVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRAMVSLPKGKGVKLTILEEKAAKIKKAQNN 262
BLAST of mRNA_H-paniculata_contig2258.6013.1 vs. uniprot
Match: A0A835ZEV0_9STRA (40S ribosomal protein S4 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEV0_9STRA) HSP 1 Score: 419 bits (1076), Expect = 1.030e-140 Identity = 196/259 (75.68%), Postives = 227/259 (87.64%), Query Frame = 1
Query: 412 RGPKKHMKRLNAPKHWLLGKMEGVWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKIRTDVNFPAGFMDVVQIEKSGDLFRLLYNTKGHFVLHRINSEESKFKLCRVNKVEFTKNKIPYLVTHDGRTIRYPDPLIKVHDVVKIDLETGKPIETIKFEIGNVCMISRGRNAGRVGVMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRTMVSLPKGKGVKLSILEERAAKAKKALN 1188
RGPKKH+KRLNAPKHWLLGK+EG+WAPKPS GPH RECLPL+II+RNRLKYALT +EANMICMQK +KVDGK+RTD+NFPAGFMDVV IEKS D FRLLYNTKG FVLHR+ EE+K+KLCRV KVE +K KIP+LVTHDGRTIRYPDPL+KV+D +K+D+ETGK + K+EIGN+CMISRG N GRVG +QHIERHPGSFDIV+VKD AG+VFATR NIF +G TR +SLP+GKGVKL+ILEERAA+ K+A N
Sbjct: 2 RGPKKHLKRLNAPKHWLLGKLEGIWAPKPSCGPHNGRECLPLIIIVRNRLKYALTKAEANMICMQKHVKVDGKVRTDLNFPAGFMDVVSIEKSADQFRLLYNTKGRFVLHRVKDEEAKYKLCRVQKVEVSKKKIPFLVTHDGRTIRYPDPLVKVNDSIKVDVETGKMSDIYKYEIGNLCMISRGHNTGRVGTIQHIERHPGSFDIVTVKDSAGNVFATRQANIFVLGESTRPAISLPRGKGVKLTILEERAARDKRAAN 260
BLAST of mRNA_H-paniculata_contig2258.6013.1 vs. uniprot
Match: A0A7S2WPT4_9STRA (40S ribosomal protein S4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPT4_9STRA) HSP 1 Score: 392 bits (1007), Expect = 4.650e-130 Identity = 180/251 (71.71%), Postives = 216/251 (86.06%), Query Frame = 1
Query: 412 RGPKKHMKRLNAPKHWLLGKMEGVWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKIRTDVNFPAGFMDVVQIEKSGDLFRLLYNTKGHFVLHRINSEESKFKLCRVNKVEFTKNKIPYLVTHDGRTIRYPDPLIKVHDVVKIDLETGKPIETIKFEIGNVCMISRGRNAGRVGVMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRTMVSLPKGKGVKLSILEERA 1164
RGP+KH+KRLNAPK W+LGKMEG+WAP+PS GPH RECLPL++I+RNRLKYALT+ E ICMQ+L+K+DGK+RTD+ +PAGFMDVVQIE+SGDLFRLLY+ KG FVLHR+ +E FKLCRV KV+ + KIPY+VTHDGRTIRYPDPLIK +D VK+DL TGK I+ IKFEIG +CMI RGRNAGRVGV+QH+E+HPGSFD+++VKD AG VFATRL NIF +G + VSLPKGKG+KLSI+EERA
Sbjct: 19 RGPRKHLKRLNAPKAWMLGKMEGIWAPRPSAGPHKLRECLPLILILRNRLKYALTLQEVKAICMQRLVKIDGKVRTDMGYPAGFMDVVQIERSGDLFRLLYDVKGRFVLHRVKEDEGSFKLCRVMKVDVSAKKIPYVVTHDGRTIRYPDPLIKANDTVKVDLATGKIIDHIKFEIGRLCMIQRGRNAGRVGVIQHVEKHPGSFDMITVKDAAGKVFATRLGNIFVIGDDKKPWVSLPKGKGIKLSIVEERA 269
BLAST of mRNA_H-paniculata_contig2258.6013.1 vs. uniprot
Match: A0A2D4CA31_PYTIN (40S ribosomal protein S4 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2D4CA31_PYTIN) HSP 1 Score: 382 bits (980), Expect = 3.200e-126 Identity = 175/257 (68.09%), Postives = 215/257 (83.66%), Query Frame = 1
Query: 412 RGPKKHMKRLNAPKHWLLGKMEGVWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKIRTDVNFPAGFMDVVQIEKSGDLFRLLYNTKGHFVLHRINSEESKFKLCRVNKVEFTKNKIPYLVTHDGRTIRYPDPLIKVHDVVKIDLETGKPIETIKFEIGNVCMISRGRNAGRVGVMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRTMVSLPKGKGVKLSILEERAAKAKKA 1182
RGP+KH+KR++APKHW+LGK++G+WAP+PS GPH RECLPLVII+RNRLKYALT E ICM KL+KVD KIR D +FPAGFMDV+++ KSGD FRLLY+TKG FVLHRIN+EE K+KLC+V + E+TK IPY+ T+DGRTIRYPDPLIKV+D VK+DLETGK ++ IKFE GN+ M++ GRNAGRVG++ HIERH GSF+I +KD AGH FATRL N+F +G+ +R VSLPKGKG+KLSILEER + KA
Sbjct: 3 RGPRKHLKRMSAPKHWMLGKLDGIWAPRPSSGPHKLRECLPLVIILRNRLKYALTKKEVTAICMNKLVKVDNKIRVDPDFPAGFMDVIELPKSGDAFRLLYDTKGRFVLHRINNEEKKYKLCKVTRQEYTKKAIPYIATNDGRTIRYPDPLIKVNDTVKVDLETGKVVDFIKFETGNLVMVTGGRNAGRVGILHHIERHEGSFNIAHIKDSAGHAFATRLGNVFVIGNESRPSVSLPKGKGIKLSILEERQIRESKA 259
BLAST of mRNA_H-paniculata_contig2258.6013.1 vs. uniprot
Match: W7TUQ1_9STRA (40S ribosomal protein S4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUQ1_9STRA) HSP 1 Score: 381 bits (978), Expect = 5.760e-126 Identity = 176/255 (69.02%), Postives = 217/255 (85.10%), Query Frame = 1
Query: 412 RGPKKHMKRLNAPKHWLLGKMEGVWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKIRTDVNFPAGFMDVVQIEKSGDLFRLLYNTKGHFVLHRIN--SEESKFKLCRVNKVEFTKNKIPYLVTHDGRTIRYPDPLIKVHDVVKIDLETGKPIETIKFEIGNVCMISRGRNAGRVGVMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRTMVSLPKGKGVKLSILEERAAK 1170
RGPKKH+KR+NAP+HW+L KM+G++AP+PS GPH RE LPL++I+RNRLKYALT +EAN ICMQKL+KVDGK+RTD+NFPAGFMDV+ IEKSGD FRLLY+ KG F L R+ SEE FKLCRVNK E + NKIPY+VTHDGRTIRYPDPLIK+ D VK+D+ TGK ++ IKF++GN+ ++RG N GRVG++QHIERHPGSFDI++VKD GH FATR QN+F +G G + MVSLPKGKG+KLSI+EER+A+
Sbjct: 3 RGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSIVEERSAR 257
BLAST of mRNA_H-paniculata_contig2258.6013.1 vs. uniprot
Match: F0WD75_9STRA (40S ribosomal protein S4 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WD75_9STRA) HSP 1 Score: 380 bits (975), Expect = 1.690e-125 Identity = 175/259 (67.57%), Postives = 215/259 (83.01%), Query Frame = 1
Query: 412 RGPKKHMKRLNAPKHWLLGKMEGVWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKIRTDVNFPAGFMDVVQIEKSGDLFRLLYNTKGHFVLHRINSEESKFKLCRVNKVEFTKNKIPYLVTHDGRTIRYPDPLIKVHDVVKIDLETGKPIETIKFEIGNVCMISRGRNAGRVGVMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRTMVSLPKGKGVKLSILEERAAKAKKALN 1188
RGP+KH+KRL+APKHW+LGK++GVWAP+PS GPH RECLPL+II+RNRLKYALT E MICMQK +KVDGKIR D NFPAGFMD+V+I KSGD FRLLY+TKG FVLHR+N EE K+KLC+V + E+TK IPY+ T+DGRTIRYPDPL+K +D VKIDLETGK ++ IKFE GN+ M++RGRN G VG++ IERH GSF I ++D GH FATRL N+F +G+G+R +SLPKGKG+KLSILEER+ + +K LN
Sbjct: 3 RGPRKHLKRLSAPKHWMLGKLDGVWAPRPSSGPHKLRECLPLIIILRNRLKYALTKQEVTMICMQKAVKVDGKIRVDPNFPAGFMDIVEIPKSGDQFRLLYDTKGRFVLHRVNHEEKKYKLCKVIRQEYTKKGIPYVATNDGRTIRYPDPLVKSNDTVKIDLETGKIVDFIKFETGNLVMVTRGRNTGIVGMLHQIERHEGSFSIARIRDSTGHEFATRLGNVFAIGNGSRPWISLPKGKGIKLSILEERSVREQKNLN 261
BLAST of mRNA_H-paniculata_contig2258.6013.1 vs. uniprot
Match: A0A067CQF7_SAPPC (40S ribosomal protein S4 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CQF7_SAPPC) HSP 1 Score: 371 bits (952), Expect = 5.250e-122 Identity = 176/257 (68.48%), Postives = 211/257 (82.10%), Query Frame = 1
Query: 412 RGPKKHMKRLNAPKHWLLGKMEGVWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKIRTDVNFPAGFMDVVQIEKSGDLFRLLYNTKGHFVLHRINSEESKFKLCRVNKVEFTKNKIPYLVTHDGRTIRYPDPLIKVHDVVKIDLETGKPIETIKFEIGNVCMISRGRNAGRVGVMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRTMVSLPKGKGVKLSILEERAAKAKKA 1182
RGP+ H+KR++APKHW+LGK++G+WAP+PS GPH RECLPL+IIIRNRLKYALT E MICMQKL+KVDGK R D NFPAGFMDVV+I KSGD+FRLLY+TKG FVLHRIN EE K+KL +V + EFT +IPY+ T+DGRTIRY DPLIKV+D VKID+ETGK ++ IKFE G + MI+RGRNAGRVG++ HIERH GSF+I +KD G FATR N+F +G R VSLPKGKGVKLSILEER+ + +KA
Sbjct: 3 RGPRHHLKRMSAPKHWMLGKLDGIWAPRPSSGPHKLRECLPLIIIIRNRLKYALTKQEVTMICMQKLVKVDGKTRVDPNFPAGFMDVVEITKSGDVFRLLYDTKGRFVLHRINEEEKKYKLAKVTRQEFTAKQIPYVATNDGRTIRYADPLIKVNDTVKIDIETGKVVDFIKFETGAMVMITRGRNAGRVGILHHIERHAGSFNIAHIKDTTGAEFATRQGNVFAVGKDGRPWVSLPKGKGVKLSILEERSMREQKA 259
BLAST of mRNA_H-paniculata_contig2258.6013.1 vs. uniprot
Match: M4BHJ4_HYAAE (40S ribosomal protein S4 n=21 Tax=Peronosporaceae TaxID=4777 RepID=M4BHJ4_HYAAE) HSP 1 Score: 369 bits (948), Expect = 1.960e-121 Identity = 171/259 (66.02%), Postives = 215/259 (83.01%), Query Frame = 1
Query: 412 RGPKKHMKRLNAPKHWLLGKMEGVWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKIRTDVNFPAGFMDVVQIEKSGDLFRLLYNTKGHFVLHRINSEESKFKLCRVNKVEFTKNKIPYLVTHDGRTIRYPDPLIKVHDVVKIDLETGKPIETIKFEIGNVCMISRGRNAGRVGVMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRTMVSLPKGKGVKLSILEERAAKAKKALN 1188
RGP+KH+KRL+APKHW+LGK++G+WAP+PS GPH RECLPL+II+RNRLKYALT E MICMQK +KVDGK+R D +FPAGFMDVV++ K+ D FRLLY+TKG FVLHR++ EE K+KL +V + E+TK IPY+ T+DGRTIRYPDP+IKV D VKIDLETGK ++ IKFE+GN+ I+RGRN+GRVG++ HIERH GSF+I VKD AG+ FATRL N+F +G +R VSLP+GKG+KL+ILE+R K K+A N
Sbjct: 3 RGPRKHLKRLSAPKHWMLGKLDGIWAPRPSSGPHKLRECLPLIIILRNRLKYALTKQEVTMICMQKSVKVDGKVRVDPDFPAGFMDVVELPKTDDQFRLLYDTKGRFVLHRVSDEEKKYKLAKVIRQEYTKKAIPYIATNDGRTIRYPDPVIKVGDTVKIDLETGKVVDHIKFEVGNLVTITRGRNSGRVGILHHIERHQGSFNIAHVKDSAGNDFATRLGNVFVVGKESRPWVSLPRGKGIKLNILEQRELKEKRANN 261
BLAST of mRNA_H-paniculata_contig2258.6013.1 vs. uniprot
Match: A0A7S2HY22_9STRA (40S ribosomal protein S4 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HY22_9STRA) HSP 1 Score: 369 bits (948), Expect = 1.960e-121 Identity = 167/250 (66.80%), Postives = 209/250 (83.60%), Query Frame = 1
Query: 412 RGPKKHMKRLNAPKHWLLGKMEGVWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKIRTDVNFPAGFMDVVQIEKSGDLFRLLYNTKGHFVLHRINSEESKFKLCRVNKVEFTKNKIPYLVTHDGRTIRYPDPLIKVHDVVKIDLETGKPIETIKFEIGNVCMISRGRNAGRVGVMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRTMVSLPKGKGVKLSILEER 1161
RGPKKH+KRLNAP+HW LGKM G+WAPKPSPGPH RECLP+ I++R+RLKYALT E ICM++ +KVDGK+RTD NFPAGFMDV+++EKSGD FRLL++TKG FVLHRIN EE+ +KLCRVNKV + NKIP VTHDGRTIRYPDP +KV+D VK+D+E+GK + +KFE+G++ MI+RGRNAGRVG + HIE+H GSFDIV+VKD GH F+TRLQN+F +G G V+L KG+G+K +I++ER
Sbjct: 3 RGPKKHLKRLNAPRHWNLGKMRGIWAPKPSPGPHKQRECLPITIVLRDRLKYALTNKECMQICMERCVKVDGKVRTDHNFPAGFMDVIELEKSGDRFRLLFDTKGRFVLHRINREEASYKLCRVNKVFVSANKIPVAVTHDGRTIRYPDPDVKVNDSVKVDIESGKMSDILKFELGSMVMITRGRNAGRVGTLMHIEKHEGSFDIVTVKDTKGHTFSTRLQNVFVIGSGNHPQVTLAKGRGIKKTIIQER 252
BLAST of mRNA_H-paniculata_contig2258.6013.1 vs. uniprot
Match: A0A421F6I5_9STRA (KOW domain-containing protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F6I5_9STRA) HSP 1 Score: 374 bits (960), Expect = 1.330e-120 Identity = 174/259 (67.18%), Postives = 214/259 (82.63%), Query Frame = 1
Query: 412 RGPKKHMKRLNAPKHWLLGKMEGVWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKIRTDVNFPAGFMDVVQIEKSGDLFRLLYNTKGHFVLHRINSEESKFKLCRVNKVEFTKNKIPYLVTHDGRTIRYPDPLIKVHDVVKIDLETGKPIETIKFEIGNVCMISRGRNAGRVGVMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRTMVSLPKGKGVKLSILEERAAKAKKALN 1188
RGP+KH+KR++APKHW+LGK++G+WAP+PS GPH RECLPL+II+RNRLKYALT E MICMQK +KVDGK+R D NFP+GFMDVV++ K+GD FRL+Y+TKG FVLHRI+ EE KFKL +V + E+TK IPY+ T DGRTIRYPDPLIKV D VKIDLETGK ++ IKFE+GN+ I+RGRN+GRVG++ HIERH GSF+I VKD AG+ FATRL N+F +G R VSLPKGKG+KL+ILE+R + KKA N
Sbjct: 182 RGPRKHLKRMSAPKHWMLGKLDGIWAPRPSSGPHKLRECLPLIIILRNRLKYALTKQEVTMICMQKSVKVDGKVRVDPNFPSGFMDVVELPKTGDQFRLMYDTKGRFVLHRISDEEKKFKLAKVIRQEYTKKAIPYIATSDGRTIRYPDPLIKVGDTVKIDLETGKVVDHIKFEVGNLVTITRGRNSGRVGILHHIERHQGSFNIAHVKDSAGNDFATRLGNVFAVGKEARPWVSLPKGKGIKLNILEQRELREKKANN 440 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2258.6013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2258.6013.1 >prot_H-paniculata_contig2258.6013.1 ID=prot_H-paniculata_contig2258.6013.1|Name=mRNA_H-paniculata_contig2258.6013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=255bp MKRLNAPKHWLLGKMEGVWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMback to top mRNA from alignment at H-paniculata_contig2258:15668..21053+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2258.6013.1 ID=mRNA_H-paniculata_contig2258.6013.1|Name=mRNA_H-paniculata_contig2258.6013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5386bp|location=Sequence derived from alignment at H-paniculata_contig2258:15668..21053+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2258:15668..21053+ >mRNA_H-paniculata_contig2258.6013.1 ID=mRNA_H-paniculata_contig2258.6013.1|Name=mRNA_H-paniculata_contig2258.6013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at H-paniculata_contig2258:15668..21053+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |