prot_H-paniculata_contig2258.6012.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2258.6012.1
Unique Nameprot_H-paniculata_contig2258.6012.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length136
Homology
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: D7FLZ6_ECTSI (Eukaryotic translation initiation factor 4C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ6_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 3.050e-88
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 0
Query:    1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI 135
            GKGGKNRRRGKNENEETKRELEFKEAGQEYAQV+RMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDK +IIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFD+I
Sbjct:    6 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDEI 140          
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: A0A7S2UW94_9STRA (Eukaryotic translation initiation factor 4C n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2UW94_9STRA)

HSP 1 Score: 253 bits (646), Expect = 6.900e-85
Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 0
Query:    1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI 135
            GKGGKNRRRGKNENEETKRELEFKE GQEYAQVIRMLGNGR EC+CYDG+TRLGHIRGKMRKKVWVSAGDIVLVG RDYQDDK +IIHRYNADEARNLKQYGELPEHARINETAVD+AMEGDGA+DDIGIDFDDI
Sbjct:    6 GKGGKNRRRGKNENEETKRELEFKEDGQEYAQVIRMLGNGRCECFCYDGITRLGHIRGKMRKKVWVSAGDIVLVGLRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDIAMEGDGADDDIGIDFDDI 140          
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: A0A7S2WRV7_9STRA (Eukaryotic translation initiation factor 4C n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2WRV7_9STRA)

HSP 1 Score: 226 bits (576), Expect = 3.250e-74
Identity = 113/135 (83.70%), Postives = 124/135 (91.85%), Query Frame = 0
Query:    1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI 135
            GKGGKNRRRGKN+NEE+KR+LEFKE GQEY+QV+RMLGNGR ECYC+DG TRLGHIRGKMRKKVWVSAGDIVLVG R++QDDK +IIH+YNADEARNLK YGELPE ARINETAVDLAMEG    DDIGIDFD+I
Sbjct:    6 GKGGKNRRRGKNDNEESKRQLEFKEPGQEYSQVVRMLGNGRCECYCFDGQTRLGHIRGKMRKKVWVSAGDIVLVGLREFQDDKVDIIHKYNADEARNLKTYGELPETARINETAVDLAMEGGDEVDDIGIDFDEI 140          
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: B7FP79_PHATC (Eukaryotic translation initiation factor 4C (Fragment) n=6 Tax=Bacillariophycidae TaxID=33850 RepID=B7FP79_PHATC)

HSP 1 Score: 224 bits (570), Expect = 2.260e-73
Identity = 109/135 (80.74%), Postives = 125/135 (92.59%), Query Frame = 0
Query:    1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI 135
            GKGGKNRRRGK + EE+KRELEFKE GQEYAQV++MLGNGR EC+C+DGVTRLGHIRGKMRKKVW++AGDIVLV KRD+QD+K +I+H+Y+ADEARNLKQYGELPE ARINETAVD+AM GD  +DDIGIDFDDI
Sbjct:    1 GKGGKNRRRGKGDGEESKRELEFKEDGQEYAQVVKMLGNGRCECFCFDGVTRLGHIRGKMRKKVWITAGDIVLVAKRDFQDEKVDIVHKYSADEARNLKQYGELPETARINETAVDMAMAGDENDDDIGIDFDDI 135          
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: A0A7S2A929_TRICV (Eukaryotic translation initiation factor 4C n=10 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S2A929_TRICV)

HSP 1 Score: 224 bits (571), Expect = 3.770e-73
Identity = 111/135 (82.22%), Postives = 123/135 (91.11%), Query Frame = 0
Query:    1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI 135
            GKGGKNRRRGK + EE KRELEFKE GQEYAQV++MLGNGR EC+C+DGVTRLGHIRGKMRKKVWV+AGDIVLVGKRD+QD+K +I+H+Y ADEARNLKQYGELPE ARINETAVDLAM  +  EDDIGIDFDDI
Sbjct:   27 GKGGKNRRRGKGDGEEAKRELEFKEEGQEYAQVVKMLGNGRCECFCFDGVTRLGHIRGKMRKKVWVTAGDIVLVGKRDFQDEKVDILHKYTADEARNLKQYGELPETARINETAVDLAMTTEDGEDDIGIDFDDI 161          
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: B5YN42_THAPS (Eukaryotic translation initiation factor 4C n=2 Tax=Thalassiosira TaxID=35127 RepID=B5YN42_THAPS)

HSP 1 Score: 218 bits (555), Expect = 5.150e-71
Identity = 108/135 (80.00%), Postives = 122/135 (90.37%), Query Frame = 0
Query:    1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI 135
            G+GGKNRR      EE+KRELEFKE GQEYAQV+RMLGNGR EC+CYDGVTRLGHIRGKMRKKVW++AGDIVLVGKRD+QD+K +I+H+Y+ADEARNLKQYGELPE ARINETAVD AM G+G +DDIGIDFDDI
Sbjct:    6 GQGGKNRRXXXXXXEESKRELEFKEEGQEYAQVVRMLGNGRCECFCYDGVTRLGHIRGKMRKKVWITAGDIVLVGKRDFQDEKVDILHKYSADEARNLKQYGELPETARINETAVDQAMAGEGDDDDIGIDFDDI 140          
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: K3WDU9_GLOUD (Eukaryotic translation initiation factor 4C n=28 Tax=Oomycota TaxID=4762 RepID=K3WDU9_GLOUD)

HSP 1 Score: 215 bits (547), Expect = 7.990e-70
Identity = 108/135 (80.00%), Postives = 121/135 (89.63%), Query Frame = 0
Query:    1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI 135
            GKGGKNRRRGKN+NEE KRELEFKE GQEYAQV+RMLGNGR E YC+DGVTRLGHIRGKMRKKVWV AGDI+LV  R+YQD K +IIH+YNADEAR+LK YGELP++ARINET VD+AMEGD  +DDIG +FDDI
Sbjct:    6 GKGGKNRRRGKNDNEENKRELEFKEDGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETTVDMAMEGD--DDDIGFEFDDI 138          
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: W7TWV5_9STRA (Eukaryotic translation initiation factor 4C n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWV5_9STRA)

HSP 1 Score: 209 bits (531), Expect = 2.420e-67
Identity = 105/136 (77.21%), Postives = 120/136 (88.24%), Query Frame = 0
Query:    1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDG-AEDDIGIDFDDI 135
            GKGGKNRRRGKNENEETKR+L FKE GQEY QVI+MLGNGR E YC+DG  RL HIRGKMRKKVWVSAGDIVL+G RDYQ+DK +IIH+YNADEARNLK +GELPE A+INETA+DL +EG   +ED+IG+DFD+I
Sbjct:    6 GKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141          
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: W4GJ99_9STRA (Eukaryotic translation initiation factor 4C n=8 Tax=Saprolegniaceae TaxID=4764 RepID=W4GJ99_9STRA)

HSP 1 Score: 202 bits (514), Expect = 9.410e-65
Identity = 104/135 (77.04%), Postives = 116/135 (85.93%), Query Frame = 0
Query:    1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI 135
            GKGGKNRRRGK + EE KRELEFKE GQEYAQV+RMLGNGR E YCYDGVTRLGHIRGKMRKKVWV  GDIVLV  R+YQD K +IIH+YNADEAR+LK YGELP++ARINET+VD  M+G G +DD G +FDDI
Sbjct:    9 GKGGKNRRRGKGDVEENKRELEFKEDGQEYAQVLRMLGNGRLEAYCYDGVTRLGHIRGKMRKKVWVGVGDIVLVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETSVD--MDGAGDDDDCGFEFDDI 141          
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: A0A0P1AHC5_PLAHL (Eukaryotic translation initiation factor 4C n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AHC5_PLAHL)

HSP 1 Score: 204 bits (519), Expect = 1.290e-63
Identity = 99/122 (81.15%), Postives = 112/122 (91.80%), Query Frame = 0
Query:    1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGD 122
            GKGGKNRRRGKN+NEE KR+LEFKE GQEYAQV+RMLGNGR E YC+DGVTRLGHIRGKMRKKVWV AGDI+LV  R+YQD K ++IH+YNADEAR+LK YGELP++ARINETAVD+AMEGD
Sbjct:    6 GKGGKNRRRGKNDNEENKRDLEFKEDGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDVIHKYNADEARSLKAYGELPDNARINETAVDMAMEGD 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLZ6_ECTSI3.050e-8897.04Eukaryotic translation initiation factor 4C n=1 Ta... [more]
A0A7S2UW94_9STRA6.900e-8593.33Eukaryotic translation initiation factor 4C n=2 Ta... [more]
A0A7S2WRV7_9STRA3.250e-7483.70Eukaryotic translation initiation factor 4C n=3 Ta... [more]
B7FP79_PHATC2.260e-7380.74Eukaryotic translation initiation factor 4C (Fragm... [more]
A0A7S2A929_TRICV3.770e-7382.22Eukaryotic translation initiation factor 4C n=10 T... [more]
B5YN42_THAPS5.150e-7180.00Eukaryotic translation initiation factor 4C n=2 Ta... [more]
K3WDU9_GLOUD7.990e-7080.00Eukaryotic translation initiation factor 4C n=28 T... [more]
W7TWV5_9STRA2.420e-6777.21Eukaryotic translation initiation factor 4C n=2 Ta... [more]
W4GJ99_9STRA9.410e-6577.04Eukaryotic translation initiation factor 4C n=8 Ta... [more]
A0A0P1AHC5_PLAHL1.290e-6381.15Eukaryotic translation initiation factor 4C n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001253Translation initiation factor 1A (eIF-1A)SMARTSM00652eIF1neu4coord: 23..105
e-value: 9.7E-45
score: 164.6
IPR001253Translation initiation factor 1A (eIF-1A)TIGRFAMTIGR00523TIGR00523coord: 9..106
e-value: 7.2E-36
score: 120.1
IPR001253Translation initiation factor 1A (eIF-1A)PANTHERPTHR21668EIF-1Acoord: 1..133
IPR001253Translation initiation factor 1A (eIF-1A)HAMAPMF_00216aIF_1Acoord: 12..105
score: 19.421
NoneNo IPR availableGENE3D2.40.50.140coord: 1..135
e-value: 6.2E-51
score: 173.7
NoneNo IPR availablePRODOMPD005579coord: 48..104
e-value: 8.0E-18
score: 217.0
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 27..89
e-value: 5.6E-23
score: 80.5
IPR006196RNA-binding domain, S1, IF1 typePROSITEPS50832S1_IF1_TYPEcoord: 17..91
score: 30.698
IPR018104Translation initiation factor 1A (eIF-1A), conserved sitePROSITEPS01262IF1Acoord: 36..58
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2258contigH-paniculata_contig2258:9405..10865 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2258.6012.1mRNA_H-paniculata_contig2258.6012.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2258 9405..10865 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2258.6012.1 ID=prot_H-paniculata_contig2258.6012.1|Name=mRNA_H-paniculata_contig2258.6012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGV
TRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQ
YGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001253TIF_eIF-1A
IPR006196RNA-binding_domain_S1_IF1
IPR018104TIF_eIF-1A_CS
IPR012340NA-bd_OB-fold